Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005232

Physical Location & Seq

Genomic Coordinates Forward (+)

15425565 .. 15429119

Gene Structure 3555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G186400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTTTCGTGAAGGTACAAATAGTGAAGAGAACATGGGTAATCTTTTCTGTTGTGTACAAGTTGATCAATCCAAAGTAGCTGTAAAGGAAAAATTTGGTAGGTTTGTGGAGGTTCTTGAGCCAGGATGCCATTGCCTACCTTGGTTTCTTGGGCATCAGATTGCTGGTCATCTCTCTCTTCGTTTGCAGCAACTGGACGTGCGCTGTGAGACCAAGACAAAGGACAACGTATTTGTCAACGTCGTTGCATCTATTCAATATCGTGCTCTGGCAGACAAAGCAGATGATGCCTTCTACAAACTCAGCAACACAAGGTCTCAAATCCAGGCCTATGTTTTTGATGTCATTAGAGCTAGTGTTCCAAAGCTCAACCTGGATGCTGCTTTTGAGCAAAAGAATGAAATTGCAAAAGCTGTGGAAGATGAGCTCGAGAAAGCTATGTCTGCTTATGGTTATGAGATTGTACAAACGCTCATTGTTGACATAGAACCAGATGAGCATGTGAAACGGGCAATGAACGAAATCAATGCTGCTGCAAGAATGCGGGTGGCAGCTAATGAGAAGGCAGAGGCAGAGAAGATTTTGCAAATTAAGCGGGCTGAGGGTGAGGCCGAGTCCAAGTATCTCTCTGGGCTGGGTATAGCTCGCCAGCGTCAAGCGATTGTAGATGGTTTGAGAGACAGTGTGCTGGGCTTCTCTGTCAATGTTCCAGGGACTACTGCAAAGGATGTCATGGACATGGTCCTTGTGACTCAGTATTTTGACACCATGAAGGAAATTGGCGCTTCCTCTAAATCCTCTGCCGTGTTTATTCCCCATGGACCTGGTTCTGTCCGTGATGTAGCTTCTCAGATTCGTGATGGACTTCTTCAGGGTTCTCACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

296

Amino Acids

32.67

Weight (kDa)

5.63

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01290
fragaria_vesca	FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490
malus_domestica	MD06G1188200.v1.1 MD14G1194700.v1.1
prunus_persica	Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1
pyrus_communis	pycom14g16170
rosa_chinensis	RchiOBHm_Chr7g0180601
rosa_laevigata	RLG00000005251
rosa_multiflora	Rmu_co8451221.1_g000001 Rmu_sc0005690.1_g000020 Rmu_sc0023372.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272750
rosa_rugosa	Rorug06G0434100 Rorug06G0434200 Rorug06G0434300 Rorug06G0434400 Rorug06G0434500
rosa_samantha	Rh7AG035500 Rh7BG035400 Rh7DG035700
rosa_wichuraiana	Rw7G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	544, 595
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	3 cut(s)	16, 57, 465
AgsI	TTSAA	1 cut(s)	257
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	5 cut(s)	121, 324, 372, 709, 823
AluBI	AGCT	9 cut(s)	80, 353, 367, 413, 427, 437, 554, 644, 845
AluI	AGCT	9 cut(s)	80, 353, 367, 413, 427, 437, 554, 644, 845
Alw21I	GWGCWC	2 cut(s)	268, 429
Alw26I	GTCTC	3 cut(s)	203, 321, 672
AlwNI	CAGNNNCTG	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	327, 609
ApeKI	GCWGC	5 cut(s)	187, 380, 530, 533, 551
ApoI	RAATTY	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspLEI	GCGC	2 cut(s)	204, 785
AspS9I	GGNCC	2 cut(s)	742, 821
AsuHPI	GGTGA	2 cut(s)	617, 872
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	742, 821
BanII	GRGCYC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	268, 429
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	5 cut(s)	199, 367, 517, 520, 563
BccI	CCATC	2 cut(s)	662, 854
BceAI	ACGGC	1 cut(s)	788
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	5 cut(s)	123, 326, 374, 711, 825
BclI	TGATCA	1 cut(s)	64
BcoDI	GTCTC	3 cut(s)	203, 321, 672
BfaI	CTAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	786
BisI	GCNGC	5 cut(s)	188, 381, 531, 534, 552
BlsI	GCNGC	5 cut(s)	189, 382, 532, 535, 553
Bme1390I	CCNGG	5 cut(s)	123, 326, 374, 711, 825
Bme18I	GGWCC	2 cut(s)	742, 821
BmeT110I	CYCGRG	1 cut(s)	428
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	742, 821
BmrFI	CCNGG	5 cut(s)	123, 326, 374, 711, 825
BmsI	GCATC	5 cut(s)	116, 163, 257, 277, 367
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	137
BsaI	GGTCTC	2 cut(s)	203, 321
BsaJI	CCNNGG	3 cut(s)	140, 710, 817
Bse1I	ACTGG	2 cut(s)	198, 883
Bse3DI	GCAATG	2 cut(s)	130, 519
BseBI	CCWGG	5 cut(s)	123, 326, 374, 711, 825
BseDI	CCNNGG	3 cut(s)	140, 710, 817
BseGI	GGATG	3 cut(s)	131, 382, 733
BseMI	GCAATG	2 cut(s)	130, 519
BseMII	CTCAG	4 cut(s)	316, 591, 767, 863
BseNI	ACTGG	2 cut(s)	198, 883
BseXI	GCAGC	5 cut(s)	199, 367, 517, 520, 563
BseYI	CCCAGC	2 cut(s)	634, 688
BshFI	GGCC	2 cut(s)	329, 611
BsiHKAI	GWGCWC	2 cut(s)	268, 429
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	727
BsmAI	GTCTC	3 cut(s)	203, 321, 672
BsmFI	GGGAC	1 cut(s)	727
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	329, 611
Bso31I	GGTCTC	2 cut(s)	203, 321
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	268, 429
Bsp1407I	TGTACA	2 cut(s)	55, 463
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	817
BspACI	CCGC	2 cut(s)	544, 595
BspANI	GGCC	2 cut(s)	329, 611
BspCNI	CTCAG	4 cut(s)	315, 592, 766, 862
BspTNI	GGTCTC	2 cut(s)	203, 321
BsrDI	GCAATG	2 cut(s)	130, 519
BsrGI	TGTACA	2 cut(s)	55, 463
BsrI	ACTGG	2 cut(s)	198, 883
BssECI	CCNNGG	3 cut(s)	140, 710, 817
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	140, 817
Bst2UI	CCWGG	5 cut(s)	123, 326, 374, 711, 825
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	2 cut(s)	21, 183
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	2 cut(s)	55, 463
BstC8I	GCNNGC	3 cut(s)	597, 646, 650
BstDEI	CTNAG	4 cut(s)	302, 600, 753, 849
BstDSI	CCRYGG	1 cut(s)	817
BstF5I	GGATG	3 cut(s)	131, 382, 733
BstH2I	RGCGCY	1 cut(s)	786
BstHHI	GCGC	2 cut(s)	204, 785
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	3 cut(s)	203, 321, 672
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 287, 443, 592
BstNI	CCWGG	5 cut(s)	123, 326, 374, 711, 825
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	5 cut(s)	121, 324, 372, 709, 823
BstV1I	GCAGC	5 cut(s)	199, 367, 517, 520, 563
BstXI	CCANNNNNNTGG	1 cut(s)	824
BsuRI	GGCC	2 cut(s)	329, 611
BtgI	CCRYGG	1 cut(s)	817
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	131, 382, 733
BtsIMutI	CAGTG	1 cut(s)	688
Cac8I	GCNNGC	3 cut(s)	597, 646, 650
CaiI	CAGNNNCTG	1 cut(s)	193
CfoI	GCGC	2 cut(s)	204, 785
Cfr13I	GGNCC	2 cut(s)	742, 821
CseI	GACGC	1 cut(s)	641
CsiI	ACCWGGT	1 cut(s)	823
Csp6I	GTAC	3 cut(s)	15, 56, 464
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CviAII	CATG	6 cut(s)	34, 500, 733, 739, 769, 818
CviQI	GTAC	3 cut(s)	15, 56, 464
DdeI	CTNAG	4 cut(s)	302, 600, 753, 849
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	21, 183
EarI	CTCTTC	2 cut(s)	21, 183
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	2 cut(s)	140, 817
Eco147I	AGGCCT	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	2 cut(s)	203, 321
Eco47I	GGWCC	2 cut(s)	742, 821
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	427
EcoRII	CCWGG	5 cut(s)	121, 324, 372, 709, 823
EcoT14I	CCWWGG	2 cut(s)	140, 817
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	2 cut(s)	140, 817
FaeI	CATG	6 cut(s)	37, 503, 736, 742, 772, 821
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	6 cut(s)	33, 499, 732, 738, 768, 817
FauI	CCCGC	2 cut(s)	537, 588
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	188, 381, 531, 534, 552
FokI	GGATG	3 cut(s)	138, 389, 740
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	5 cut(s)	188, 381, 531, 534, 552
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	2 cut(s)	203, 784
GluI	GCNGC	5 cut(s)	188, 381, 531, 534, 552
GsaI	CCCAGC	2 cut(s)	638, 692
HaeII	RGCGCY	1 cut(s)	786
HaeIII	GGCC	2 cut(s)	329, 611
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	2 cut(s)	204, 785
Hin1II	CATG	6 cut(s)	37, 503, 736, 742, 772, 821
Hin6I	GCGC	2 cut(s)	202, 783
HinP1I	GCGC	2 cut(s)	202, 783
HincII	GTYRAC	2 cut(s)	238, 481
HindII	GTYRAC	2 cut(s)	238, 481
HinfI	GANTC	3 cut(s)	614, 751, 853
HphI	GGTGA	2 cut(s)	617, 872
Hpy166II	GTNNAC	3 cut(s)	56, 238, 481
Hpy188I	TCNGA	2 cut(s)	159, 852
Hpy188III	TCNNGA	4 cut(s)	8, 116, 430, 857
Hpy8I	GTNNAC	3 cut(s)	56, 238, 481
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	4 cut(s)	5, 301, 556, 766
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4IV	ACGT	3 cut(s)	198, 228, 240
HpyCH4V	TGCA	6 cut(s)	187, 248, 407, 536, 586, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 287, 443, 592
HpyF3I	CTNAG	4 cut(s)	302, 600, 753, 849
HpySE526I	ACGT	3 cut(s)	198, 228, 240
Hsp92II	CATG	6 cut(s)	37, 503, 736, 742, 772, 821
HspAI	GCGC	2 cut(s)	202, 783
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	64
Lsp1109I	GCAGC	5 cut(s)	199, 367, 517, 520, 563
LweI	GCATC	5 cut(s)	116, 163, 257, 277, 367
MabI	ACCWGGT	1 cut(s)	823
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	3 cut(s)	198, 228, 240
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	5 cut(s)	38, 170, 431, 589, 860
MhlI	GDGCHC	2 cut(s)	268, 429
MluCI	AATT	4 cut(s)	92, 402, 588, 777
MlyI	GAGTC	2 cut(s)	623, 745
MnlI	CCTC	6 cut(s)	103, 562, 595, 601, 799, 808
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	737
MspR9I	CCNGG	5 cut(s)	123, 326, 374, 711, 825
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	5 cut(s)	123, 326, 374, 711, 825
MwoI	GCNNNNNNNGC	4 cut(s)	278, 287, 443, 592
NcoI	CCATGG	1 cut(s)	817
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	6 cut(s)	37, 503, 736, 742, 772, 821
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	748
NspI	RCATGY	1 cut(s)	503
PaeR7I	CTCGAG	1 cut(s)	428
PceI	AGGCCT	1 cut(s)	329
PctI	GAATGC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	853
PflFI	GACNNNGTC	1 cut(s)	740
PkrI	GCNGC	5 cut(s)	189, 382, 532, 535, 553
PleI	GAGTC	2 cut(s)	622, 745
PpsI	GAGTC	2 cut(s)	622, 745
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	5 cut(s)	121, 324, 372, 709, 823
PspFI	CCCAGC	2 cut(s)	634, 688
PspGI	CCWGG	5 cut(s)	121, 324, 372, 709, 823
PspPI	GGNCC	2 cut(s)	742, 821
PstNI	CAGNNNCTG	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	740
RsaI	GTAC	3 cut(s)	16, 57, 465
RsaNI	GTAC	3 cut(s)	15, 56, 464
RseI	CAYNNNNRTG	1 cut(s)	737
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	5 cut(s)	188, 381, 531, 534, 552
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	742, 821
SchI	GAGTC	2 cut(s)	623, 745
ScrFI	CCNGG	5 cut(s)	123, 326, 374, 711, 825
SduI	GDGCHC	2 cut(s)	268, 429
SexAI	ACCWGGT	1 cut(s)	823
SfaNI	GCATC	5 cut(s)	116, 163, 257, 277, 367
Sfr274I	CTCGAG	1 cut(s)	428
SinI	GGWCC	2 cut(s)	742, 821
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	116, 428
SmoI	CTYRAG	2 cut(s)	116, 428
Sse9I	AATT	4 cut(s)	92, 402, 588, 777
SseBI	AGGCCT	1 cut(s)	329
SsiI	CCGC	2 cut(s)	544, 595
SspMI	CTAG	1 cut(s)	354
SstI	GAGCTC	1 cut(s)	429
StuI	AGGCCT	1 cut(s)	329
StyD4I	CCNGG	5 cut(s)	121, 324, 372, 709, 823
StyI	CCWWGG	2 cut(s)	140, 817
TaaI	ACNGT	1 cut(s)	683
TaiI	ACGT	3 cut(s)	201, 231, 243
TaqI	TCGA	1 cut(s)	429
TasI	AATT	4 cut(s)	92, 402, 588, 777
TatI	WGTACW	2 cut(s)	55, 463
TfiI	GAWTC	1 cut(s)	853
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	5 cut(s)	187, 380, 530, 533, 551
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	3 cut(s)	414, 530, 785
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	1 cut(s)	688
Tth111I	GACNNNGTC	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	742, 821
XapI	RAATTY	1 cut(s)	92
XceI	RCATGY	1 cut(s)	503
XhoI	CTCGAG	1 cut(s)	428
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.