Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005232

Physical Location & Seq

Genomic Coordinates Reverse (-)

56956206 .. 56959083

Gene Structure 2878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0434300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGGACAAGGGTTCGGACGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCGCTTGAGGAAGGCCTTCTACCACTGGAGACAACGAGGCATGTGTCAATGATCGTCATAACACTGTCAAAGAAGGAAGTCAACAAATCTACCATTGGGTACCAGCCCCCATTACCTGCTGAACTGGTGAAGGCATCTGCGGAGATTGATTATGAAGGAGAGGACTCACCTAGTGGTCGTGGCCGTGGCAGAGGAAGGGGAAGGGGGAGGGGGAGGGGCAGGTTCAGAGGAAACAATGGCTTTGTGCCTGAATATGATGATGGAGGTTATGACCGCAGTGGGGGTGATTTCAGGGGTAGGGGCCGTGGTAGAGGACGTAGTTTCCGAGGCCGTGGAAGGGGAGGGTACAATGGGGCCCAGGCTGATGTGCAGCAAGATGGAGGATACAATGAAGAAGCACCTCCTCAAGGCGGCCGTGGTCGTGGCCGTGGCAGGGGAGGATATCGTGGAAGGGGCCGTGGCGGCTATAGGTCTAATGGGCCGATCCAGGCAGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

256

Amino Acids

28.21

Weight (kDa)

10.09

Isoelectric Point (pI)

27.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alba	PF01918	19 - 83	8e-22	Alba

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01290
fragaria_vesca	FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490
malus_domestica	MD06G1188200.v1.1 MD14G1194700.v1.1
prunus_persica	Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1
pyrus_communis	pycom14g16170
rosa_chinensis	RchiOBHm_Chr7g0180601
rosa_laevigata	RLG00000005251
rosa_multiflora	Rmu_co8451221.1_g000001 Rmu_sc0005690.1_g000020 Rmu_sc0023372.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272750
rosa_rugosa	Rorug06G0434100 Rorug06G0434200 Rorug06G0434300 Rorug06G0434400 Rorug06G0434500
rosa_samantha	Rh7AG035500 Rh7BG035400 Rh7DG035700
rosa_wichuraiana	Rw7G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	394, 480
Acc65I	GGTACC	2 cut(s)	9, 369
AccB1I	GGYRCC	2 cut(s)	9, 369
AccB7I	CCANNNNNTGG	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	5 cut(s)	272, 410, 544, 681, 732
AclWI	GGATC	4 cut(s)	12, 237, 250, 748
AcoI	YGGCCR	3 cut(s)	451, 682, 694
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	3 cut(s)	11, 371, 617
AfiI	CCNNNNNNNGG	6 cut(s)	19, 550, 607, 677, 680, 703
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	627, 756
AluBI	AGCT	3 cut(s)	167, 196, 764
AluI	AGCT	3 cut(s)	167, 196, 764
Alw26I	GTCTC	2 cut(s)	32, 293
AlwI	GGATC	4 cut(s)	12, 237, 250, 748
AoxI	GGCC	9 cut(s)	283, 451, 571, 598, 624, 682, 694, 724, 749
ApaI	GGGCCC	1 cut(s)	628
ApeKI	GCWGC	3 cut(s)	640, 761, 764
Asp700I	GAANNNNTTC	1 cut(s)	285
Asp718I	GGTACC	2 cut(s)	9, 369
AspS9I	GGNCC	5 cut(s)	571, 624, 625, 724, 749
AsuHPI	GGTGA	4 cut(s)	215, 409, 429, 566
BaeGI	GKGCMC	1 cut(s)	628
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	2 cut(s)	9, 369
BanII	GRGCYC	1 cut(s)	628
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	652, 751
BccI	CCATC	2 cut(s)	524, 641
BceAI	ACGGC	6 cut(s)	438, 558, 585, 669, 681, 711
BciT130I	CCWGG	2 cut(s)	629, 758
BciVI	GTATCC	1 cut(s)	647
BcoDI	GTCTC	2 cut(s)	32, 293
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	736
BfuAI	ACCTGC	2 cut(s)	394, 480
BfuI	GTATCC	1 cut(s)	647
BglI	GCCNNNNNGGC	1 cut(s)	732
BisI	GCNGC	5 cut(s)	641, 682, 733, 762, 765
BlsI	GCNGC	5 cut(s)	642, 683, 734, 763, 766
Bme1390I	CCNGG	2 cut(s)	629, 758
BmgT120I	GGNCC	5 cut(s)	571, 624, 625, 724, 749
BmiI	GGNNCC	8 cut(s)	11, 244, 270, 371, 572, 625, 626, 725
BmrFI	CCNGG	2 cut(s)	629, 758
BmsI	GCATC	2 cut(s)	75, 413
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	296, 660
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	9 cut(s)	76, 454, 574, 595, 601, 627, 685, 697, 727
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 550, 607, 677, 680, 703
Bse1I	ACTGG	3 cut(s)	226, 300, 399
BseBI	CCWGG	2 cut(s)	629, 758
BseDI	CCNNGG	9 cut(s)	76, 454, 574, 595, 601, 627, 685, 697, 727
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	6 cut(s)	19, 550, 607, 677, 680, 703
BseNI	ACTGG	3 cut(s)	226, 300, 399
BseRI	GAGGAG	1 cut(s)	663
BseSI	GKGCMC	1 cut(s)	628
BseX3I	CGGCCG	1 cut(s)	682
BseXI	GCAGC	2 cut(s)	652, 751
BsgI	GTGCAG	1 cut(s)	659
Bsh1285I	CGRYCG	1 cut(s)	685
BshFI	GGCC	9 cut(s)	285, 453, 573, 600, 626, 684, 696, 726, 751
BshNI	GGYRCC	2 cut(s)	9, 369
BsiEI	CGRYCG	1 cut(s)	685
BslI	CCNNNNNNNGG	6 cut(s)	19, 550, 607, 677, 680, 703
BsmAI	GTCTC	2 cut(s)	32, 293
BsmBI	CGTCTC	1 cut(s)	32
BsnI	GGCC	9 cut(s)	285, 453, 573, 600, 626, 684, 696, 726, 751
Bsp120I	GGGCCC	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	4, 242, 321, 753
BspACI	CCGC	5 cut(s)	272, 410, 544, 681, 732
BspANI	GGCC	9 cut(s)	285, 453, 573, 600, 626, 684, 696, 726, 751
BspLI	GGNNCC	8 cut(s)	11, 244, 270, 371, 572, 625, 626, 725
BspMI	ACCTGC	2 cut(s)	394, 480
BspPI	GGATC	4 cut(s)	12, 237, 250, 748
BspQI	GCTCTTC	1 cut(s)	157
BspT107I	GGYRCC	2 cut(s)	9, 369
BsrI	ACTGG	3 cut(s)	226, 300, 399
BssECI	CCNNGG	9 cut(s)	76, 454, 574, 595, 601, 627, 685, 697, 727
BssMI	GATC	4 cut(s)	4, 242, 321, 753
BssNAI	GTATAC	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	76
Bst1107I	GTATAC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	629, 758
Bst4CI	ACNGT	2 cut(s)	181, 336
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	41
BstDSI	CCRYGG	6 cut(s)	454, 574, 601, 685, 697, 727
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	4 cut(s)	7, 245, 324, 756
BstMAI	GTCTC	2 cut(s)	32, 293
BstMBI	GATC	4 cut(s)	4, 242, 321, 753
BstMCI	CGRYCG	1 cut(s)	685
BstMWI	GCNNNNNNNGC	1 cut(s)	732
BstNI	CCWGG	2 cut(s)	629, 758
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	627, 756
BstSFI	CTRYAG	1 cut(s)	736
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	2 cut(s)	652, 751
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BstZ17I	GTATAC	1 cut(s)	231
BstZI	CGGCCG	1 cut(s)	682
BsuI	GTATCC	1 cut(s)	647
BsuRI	GGCC	9 cut(s)	285, 453, 573, 600, 626, 684, 696, 726, 751
BtgI	CCRYGG	6 cut(s)	454, 574, 601, 685, 697, 727
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	553
BtsIMutI	CAGTG	3 cut(s)	293, 332, 553
BveI	ACCTGC	2 cut(s)	394, 480
Cfr13I	GGNCC	5 cut(s)	571, 624, 625, 724, 749
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	10, 370, 616
CviAII	CATG	2 cut(s)	109, 311
CviQI	GTAC	3 cut(s)	10, 370, 616
DpnI	GATC	4 cut(s)	6, 244, 323, 755
DpnII	GATC	4 cut(s)	4, 242, 321, 753
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	3 cut(s)	451, 682, 694
EagI	CGGCCG	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	628
Eco32I	GATATC	1 cut(s)	713
Eco52I	CGGCCG	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	624
EcoRII	CCWGG	2 cut(s)	627, 756
EcoRV	GATATC	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	112, 314
FatI	CATG	2 cut(s)	108, 310
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	5 cut(s)	641, 682, 733, 762, 765
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	5 cut(s)	641, 682, 733, 762, 765
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	5 cut(s)	641, 682, 733, 762, 765
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	9 cut(s)	285, 453, 573, 600, 626, 684, 696, 726, 751
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	112, 314
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	112, 434
HphI	GGTGA	4 cut(s)	215, 409, 429, 566
Hpy166II	GTNNAC	2 cut(s)	231, 352
Hpy188I	TCNGA	3 cut(s)	136, 497, 596
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	231, 352
HpyAV	CCTTC	9 cut(s)	275, 296, 337, 394, 419, 459, 465, 600, 714
HpyCH4III	ACNGT	2 cut(s)	181, 336
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	1 cut(s)	640
HpyF10VI	GCNNNNNNNGC	1 cut(s)	732
HpySE526I	ACGT	1 cut(s)	586
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	112, 314
KpnI	GGTACC	2 cut(s)	13, 373
Kzo9I	GATC	4 cut(s)	4, 242, 321, 753
LguI	GCTCTTC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	2 cut(s)	652, 751
LweI	GCATC	2 cut(s)	75, 413
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	6, 244, 323, 755
MboI	GATC	4 cut(s)	4, 242, 321, 753
MboII	GAAGA	4 cut(s)	174, 212, 219, 674
MfeI	CAATTG	2 cut(s)	45, 237
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	5 cut(s)	45, 141, 198, 210, 237
MlyI	GAGTC	2 cut(s)	106, 428
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	764
MspR9I	CCNGG	2 cut(s)	629, 758
MunI	CAATTG	2 cut(s)	45, 237
MvaI	CCWGG	2 cut(s)	629, 758
MwoI	GCNNNNNNNGC	1 cut(s)	732
NdeII	GATC	4 cut(s)	4, 242, 321, 753
NlaIII	CATG	2 cut(s)	112, 314
NlaIV	GGNNCC	8 cut(s)	11, 244, 270, 371, 572, 625, 626, 725
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	285
PciSI	GCTCTTC	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	5 cut(s)	642, 683, 734, 763, 766
PleI	GAGTC	2 cut(s)	106, 428
PpsI	GAGTC	2 cut(s)	106, 428
Psp6I	CCWGG	2 cut(s)	627, 756
PspGI	CCWGG	2 cut(s)	627, 756
PspN4I	GGNNCC	8 cut(s)	11, 244, 270, 371, 572, 625, 626, 725
PspOMI	GGGCCC	1 cut(s)	624
PspPI	GGNCC	5 cut(s)	571, 624, 625, 724, 749
PsuI	RGATCY	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	3 cut(s)	11, 371, 617
RsaNI	GTAC	3 cut(s)	10, 370, 616
SapI	GCTCTTC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	5 cut(s)	641, 682, 733, 762, 765
Sau3AI	GATC	4 cut(s)	4, 242, 321, 753
Sau96I	GGNCC	5 cut(s)	571, 624, 625, 724, 749
SchI	GAGTC	2 cut(s)	106, 428
ScrFI	CCNGG	2 cut(s)	629, 758
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	75, 413
SfcI	CTRYAG	1 cut(s)	736
SmlI	CTYRAG	2 cut(s)	275, 675
SmoI	CTYRAG	2 cut(s)	275, 675
Sse9I	AATT	5 cut(s)	45, 141, 198, 210, 237
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	5 cut(s)	272, 410, 544, 681, 732
SspMI	CTAG	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	627, 756
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	2 cut(s)	181, 336
TaiI	ACGT	1 cut(s)	589
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	5 cut(s)	45, 141, 198, 210, 237
TauI	GCSGC	2 cut(s)	684, 735
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	3 cut(s)	300, 339, 553
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	3 cut(s)	640, 761, 764
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	438, 675
TspRI	CASTG	3 cut(s)	300, 339, 553
Van91I	CCANNNNNTGG	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	675
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.