Rh7BG035400

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005232
Physical Location & Seq
Forward (+)
2322056 .. 2327115
5060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG035400.1

Sequence Viewer

Length: 855 bp
ATGGGTAATCTATTCTGTTTAGTACAAGTTGATCAATCCACAGTAGCTATGAGGGAAAAATTTGGCAAGTTTGTGGAAGTTATGGAGCCAGGATGCCATTGCATGCCTTGGTTTCTTGGGCATCAGGTTGCTGGTCATCTCTCTCTGCGTTTGCAGCAATTGGATGTGCGGTGTGAGACCAAGACAAAGGACAATGTCTTTGTCAATGTCGTTGCATCTATTCAATATCGTGCTCTGGCAGACAAAGCAAATGATGCTTTCTACAAACTCAGCAACACTAGGTCTCAAATCCAGGCCTATGTTTTTGATGTGATTAGAGCCAGTGTTCCAAAGCTCCTTCTGGATGATGCTTTTGAGCAAAAGAATGAAATTGCAAAAGCTGTGGAAGAAGAGCTTGAGAAGGCCATGTCTGCTTATGGTTATGAGATTGTACAAACTCTCATTGTTGACATAGAACCAGATGAGCATGTGAAACGTGCAATGAATGAAATCAATGCTGCTGCAAGAATGAGGGTGGCAGCTAATGAAAAGGCAGAGGCAGAGAAGATTTTGCAAATTAAACGGGCTGAGGGTGAGGCTGAGTCCAAGTATCTGTCTGGGCTGGGTATAGCTCGTCAACGTCAAGCAATTGTTGATGGTTTGAGAGACAGTGTGATGGGCTTTGCTGTTAATGTTCCAGGGACCACCGCAAAGGATGTCATGGACATGGTCCTTGTCACTCAGTATTTTGACACAATGAAGGAAATTGGTGCCAGCTCTAAATCCTCTGCTGTTTTTATTCCCCATGGACCTGGTGCCGTCCGCGATGTAGCTTCTCAGATCCGTGATGGACTTCTTCAGGGTTCTCACCAGTAG

Protein Analysis

284

Amino Acids

31.46

Weight (kDa)

5.76

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 9 - 182 3.8e-27 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 749, 794
AccII CGCG 1 cut(s) 804
AciI CCGC 3 cut(s) 169, 687, 802
AclWI GGATC 1 cut(s) 814
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 821
AfaI GTAC 2 cut(s) 24, 432
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 4 cut(s) 88, 291, 676, 790
AluBI AGCT 8 cut(s) 47, 334, 380, 394, 521, 611, 756, 812
AluI AGCT 8 cut(s) 47, 334, 380, 394, 521, 611, 756, 812
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 3 cut(s) 170, 288, 639
AlwI GGATC 1 cut(s) 814
AoxI GGCC 2 cut(s) 294, 402
ApeKI GCWGC 4 cut(s) 154, 497, 500, 518
ApoI RAATTY 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AspS9I GGNCC 3 cut(s) 681, 709, 788
AsuHPI GGTGA 2 cut(s) 584, 839
AvaII GGWCC 3 cut(s) 681, 709, 788
BanI GGYRCC 2 cut(s) 749, 794
Bbv12I GWGCWC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 4 cut(s) 166, 484, 487, 530
BccI CCATC 3 cut(s) 629, 649, 821
BceAI ACGGC 1 cut(s) 782
BciT130I CCWGG 4 cut(s) 90, 293, 678, 792
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 170, 288, 639
BfaI CTAG 1 cut(s) 279
BisI GCNGC 4 cut(s) 155, 498, 501, 519
BlsI GCNGC 4 cut(s) 156, 499, 502, 520
Bme1390I CCNGG 4 cut(s) 90, 293, 678, 792
Bme18I GGWCC 3 cut(s) 681, 709, 788
BmgT120I GGNCC 3 cut(s) 681, 709, 788
BmiI GGNNCC 4 cut(s) 87, 682, 751, 796
BmrFI CCNGG 4 cut(s) 90, 293, 678, 792
BmsI GCATC 5 cut(s) 83, 130, 224, 244, 337
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 416
BsaI GGTCTC 2 cut(s) 170, 288
BsaJI CCNNGG 3 cut(s) 107, 677, 784
Bse1I ACTGG 2 cut(s) 321, 850
Bse3DI GCAATG 2 cut(s) 97, 486
BseBI CCWGG 4 cut(s) 90, 293, 678, 792
BseDI CCNNGG 3 cut(s) 107, 677, 784
BseGI GGATG 4 cut(s) 98, 169, 349, 700
BseMI GCAATG 2 cut(s) 97, 486
BseMII CTCAG 5 cut(s) 283, 558, 570, 734, 830
BseNI ACTGG 2 cut(s) 321, 850
BseXI GCAGC 4 cut(s) 166, 484, 487, 530
BseYI CCCAGC 1 cut(s) 601
Bsh1236I CGCG 1 cut(s) 804
BshFI GGCC 2 cut(s) 296, 404
BshNI GGYRCC 2 cut(s) 749, 794
BsiHKAI GWGCWC 1 cut(s) 235
BslFI GGGAC 1 cut(s) 694
BsmAI GTCTC 3 cut(s) 170, 288, 639
BsmFI GGGAC 1 cut(s) 694
BsnI GGCC 2 cut(s) 296, 404
Bso31I GGTCTC 2 cut(s) 170, 288
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 31, 819
Bsp19I CCATGG 1 cut(s) 784
BspACI CCGC 3 cut(s) 169, 687, 802
BspANI GGCC 2 cut(s) 296, 404
BspCNI CTCAG 5 cut(s) 282, 559, 571, 733, 829
BspFNI CGCG 1 cut(s) 804
BspLI GGNNCC 4 cut(s) 87, 682, 751, 796
BspPI GGATC 1 cut(s) 814
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 2 cut(s) 749, 794
BspTNI GGTCTC 2 cut(s) 170, 288
BsrDI GCAATG 2 cut(s) 97, 486
BsrGI TGTACA 1 cut(s) 430
BsrI ACTGG 2 cut(s) 321, 850
BssECI CCNNGG 3 cut(s) 107, 677, 784
BssMI GATC 2 cut(s) 31, 819
BssT1I CCWWGG 2 cut(s) 107, 784
Bst2UI CCWGG 4 cut(s) 90, 293, 678, 792
Bst4CI ACNGT 2 cut(s) 43, 650
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 104, 754
BstDEI CTNAG 5 cut(s) 269, 567, 579, 720, 816
BstDSI CCRYGG 1 cut(s) 784
BstF5I GGATG 4 cut(s) 98, 169, 349, 700
BstFNI CGCG 1 cut(s) 804
BstKTI GATC 2 cut(s) 34, 822
BstMAI GTCTC 3 cut(s) 170, 288, 639
BstMBI GATC 2 cut(s) 31, 819
BstMWI GCNNNNNNNGC 4 cut(s) 154, 245, 254, 410
BstNI CCWGG 4 cut(s) 90, 293, 678, 792
BstNSI RCATGY 2 cut(s) 106, 470
BstSCI CCNGG 4 cut(s) 88, 291, 676, 790
BstUI CGCG 1 cut(s) 804
BstV1I GCAGC 4 cut(s) 166, 484, 487, 530
BstX2I RGATCY 1 cut(s) 819
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 1 cut(s) 819
BsuRI GGCC 2 cut(s) 296, 404
BtgI CCRYGG 1 cut(s) 784
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 4 cut(s) 98, 169, 349, 700
BtsIMutI CAGTG 2 cut(s) 328, 655
Cac8I GCNNGC 2 cut(s) 104, 754
Cfr13I GGNCC 3 cut(s) 681, 709, 788
CsiI ACCWGGT 1 cut(s) 790
Csp6I GTAC 2 cut(s) 23, 431
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviAII CATG 6 cut(s) 103, 406, 467, 700, 706, 785
CviQI GTAC 2 cut(s) 23, 431
DdeI CTNAG 5 cut(s) 269, 567, 579, 720, 816
DpnI GATC 2 cut(s) 33, 821
DpnII GATC 2 cut(s) 31, 819
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 2 cut(s) 107, 784
Eco147I AGGCCT 1 cut(s) 296
Eco31I GGTCTC 2 cut(s) 170, 288
Eco47I GGWCC 3 cut(s) 681, 709, 788
Eco57I CTGAAG 1 cut(s) 821
EcoRII CCWGG 4 cut(s) 88, 291, 676, 790
EcoT14I CCWWGG 2 cut(s) 107, 784
ErhI CCWWGG 2 cut(s) 107, 784
FaeI CATG 6 cut(s) 106, 409, 470, 703, 709, 788
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 1 cut(s) 694
FatI CATG 6 cut(s) 102, 405, 466, 699, 705, 784
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 4 cut(s) 155, 498, 501, 519
FokI GGATG 4 cut(s) 105, 176, 356, 707
Fsp4HI GCNGC 4 cut(s) 155, 498, 501, 519
FspBI CTAG 1 cut(s) 279
GluI GCNGC 4 cut(s) 155, 498, 501, 519
GsaI CCCAGC 1 cut(s) 605
HaeIII GGCC 2 cut(s) 296, 404
Hin1II CATG 6 cut(s) 106, 409, 470, 703, 709, 788
HincII GTYRAC 2 cut(s) 448, 617
HindII GTYRAC 2 cut(s) 448, 617
HinfI GANTC 1 cut(s) 581
HphI GGTGA 2 cut(s) 584, 839
Hpy166II GTNNAC 2 cut(s) 448, 617
Hpy188I TCNGA 1 cut(s) 819
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 448, 617
HpyAV CCTTC 3 cut(s) 347, 394, 733
HpyCH4III ACNGT 2 cut(s) 43, 650
HpyCH4IV ACGT 2 cut(s) 475, 619
HpyCH4V TGCA 7 cut(s) 102, 154, 215, 374, 479, 503, 553
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 245, 254, 410
HpyF3I CTNAG 5 cut(s) 269, 567, 579, 720, 816
HpySE526I ACGT 2 cut(s) 475, 619
Hsp92II CATG 6 cut(s) 106, 409, 470, 703, 709, 788
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 2 cut(s) 31, 819
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 2 cut(s) 85, 339
Lsp1109I GCAGC 4 cut(s) 166, 484, 487, 530
LweI GCATC 5 cut(s) 83, 130, 224, 244, 337
MabI ACCWGGT 1 cut(s) 790
MaeI CTAG 1 cut(s) 279
MaeII ACGT 2 cut(s) 475, 619
MaeIII GTNAC 1 cut(s) 715
MalI GATC 2 cut(s) 33, 821
MboI GATC 2 cut(s) 31, 819
MboII GAAGA 4 cut(s) 398, 401, 556, 827
MfeI CAATTG 2 cut(s) 158, 627
MflI RGATCY 1 cut(s) 819
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 6 cut(s) 59, 158, 369, 555, 627, 744
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 6 cut(s) 45, 504, 529, 562, 568, 775
MseI TTAA 2 cut(s) 558, 669
MslI CAYNNNNRTG 1 cut(s) 704
MspR9I CCNGG 4 cut(s) 90, 293, 678, 792
MunI CAATTG 2 cut(s) 158, 627
MvaI CCWGG 4 cut(s) 90, 293, 678, 792
MvnI CGCG 1 cut(s) 804
MwoI GCNNNNNNNGC 4 cut(s) 154, 245, 254, 410
NcoI CCATGG 1 cut(s) 784
NdeII GATC 2 cut(s) 31, 819
NlaIII CATG 6 cut(s) 106, 409, 470, 703, 709, 788
NlaIV GGNNCC 4 cut(s) 87, 682, 751, 796
NmuCI GTSAC 1 cut(s) 715
NspI RCATGY 2 cut(s) 106, 470
PaeI GCATGC 1 cut(s) 106
PceI AGGCCT 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 384
PflFI GACNNNGTC 2 cut(s) 194, 707
PkrI GCNGC 4 cut(s) 156, 499, 502, 520
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
Psp6I CCWGG 4 cut(s) 88, 291, 676, 790
PspFI CCCAGC 1 cut(s) 601
PspGI CCWGG 4 cut(s) 88, 291, 676, 790
PspN4I GGNNCC 4 cut(s) 87, 682, 751, 796
PspPI GGNCC 3 cut(s) 681, 709, 788
PsuI RGATCY 1 cut(s) 819
PsyI GACNNNGTC 2 cut(s) 194, 707
RsaI GTAC 2 cut(s) 24, 432
RsaNI GTAC 2 cut(s) 23, 431
RseI CAYNNNNRTG 1 cut(s) 704
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 558, 669
SatI GCNGC 4 cut(s) 155, 498, 501, 519
Sau3AI GATC 2 cut(s) 31, 819
Sau96I GGNCC 3 cut(s) 681, 709, 788
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 4 cut(s) 90, 293, 678, 792
SduI GDGCHC 1 cut(s) 235
SexAI ACCWGGT 1 cut(s) 790
SfaNI GCATC 5 cut(s) 83, 130, 224, 244, 337
SinI GGWCC 3 cut(s) 681, 709, 788
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
SphI GCATGC 1 cut(s) 106
Sse9I AATT 6 cut(s) 59, 158, 369, 555, 627, 744
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 3 cut(s) 169, 687, 802
SspMI CTAG 1 cut(s) 279
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 4 cut(s) 88, 291, 676, 790
StyI CCWWGG 2 cut(s) 107, 784
TaaI ACNGT 2 cut(s) 43, 650
TaiI ACGT 2 cut(s) 478, 622
TasI AATT 6 cut(s) 59, 158, 369, 555, 627, 744
TatI WGTACW 2 cut(s) 22, 430
Tru1I TTAA 2 cut(s) 558, 669
Tru9I TTAA 2 cut(s) 558, 669
TscAI CASTG 2 cut(s) 328, 655
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 4 cut(s) 154, 497, 500, 518
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 5 cut(s) 381, 497, 501, 540, 752
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 2 cut(s) 328, 655
Tth111I GACNNNGTC 2 cut(s) 194, 707
VpaK11BI GGWCC 3 cut(s) 681, 709, 788
XapI RAATTY 1 cut(s) 59
XceI RCATGY 2 cut(s) 106, 470
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.