Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005232

Physical Location & Seq

Genomic Coordinates Forward (+)

18557979 .. 18559343

Gene Structure 1365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16170.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGTAATTTATTTTGTTGTGTACAAGTAGATCAATCCACAGTAGCTATAAAGGAGAGATTTGGAAAGTTTGTGGAAGTTCTTGAGCCAGGATGTCATTACCTGCCTTGGTTTCTTGGGCATCAGCTTGCTGGCCATCTCTCTCTTCGTTTGCAGCAATTGGACGTGCGCTGCGAGACCAAGACAAAGGACAACGTATTTGTTAATGTCGTTGCATCTATTCAATATCGTGCTCTAGCAAACAAAGCAGATGATGCTTTCTACAAACTCAGCAACACAAGGTCTCAAATCCAGGCCTATGTCTTTGATGTGATTAGAGCTAGTGTTCCAAAGCTGAATCTGGATGCTGCTTTTGAGCAAAAGAATGAAATTGCAAAAGCGGTGGAAGATGAGCTCGAAAAAGCTATGTCTGCTTATGGTTATGAGATTGTACAAACGCTCATTGTTGACATAGAACCAGATGACCATGTGAAACGGGCAATGAATGAAATCAATGCTGCTGCAAGAATGAGGGTGGCAGCTAATGAAAAGGCAGAAGCTGAGAAGATTTTGCAAATTAAACGAGCTGAGGGTGAGGCTGAGTCAAAGTATCTCAGTGGGCTGGGTATAGCTCGCCAGCGTCAAGCAATTGTAGATGGTTTGCGAGATAGTGTGCTGGGGTTTTCCGTCAATGTTCCAGGGACGACCTCAAAGGATGTCATGGACATGGTCCTTGTCACACAGTATTTTGACACCATGAAGGAAATTGGCGCTGCCTCTAAATCCTCTGCCGTGTTTATTCCCCATGGACCTGGTGCTGTACGCGATGTTGCTTCTCAGATTCGTGATGGACTTCTTCAGGGTTCTCACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

285

Amino Acids

31.39

Weight (kDa)

5.92

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01290
fragaria_vesca	FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490 FvH4_5g15490
malus_domestica	MD06G1188200.v1.1 MD14G1194700.v1.1
prunus_persica	Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1 Prupe.5G186400_v2.0.a1
pyrus_communis	pycom14g16170
rosa_chinensis	RchiOBHm_Chr7g0180601
rosa_laevigata	RLG00000005251
rosa_multiflora	Rmu_co8451221.1_g000001 Rmu_sc0005690.1_g000020 Rmu_sc0023372.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272750
rosa_rugosa	Rorug06G0434100 Rorug06G0434200 Rorug06G0434300 Rorug06G0434400 Rorug06G0434500
rosa_samantha	Rh7AG035500 Rh7BG035400 Rh7DG035700
rosa_wichuraiana	Rw7G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	111
AccII	CGCG	1 cut(s)	804
AciI	CCGC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	3 cut(s)	24, 432, 801
AgsI	TTSAA	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	4 cut(s)	88, 291, 676, 790
Alw21I	GWGCWC	2 cut(s)	235, 396
Alw26I	GTCTC	2 cut(s)	170, 288
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	2 cut(s)	133, 294
ApeKI	GCWGC	7 cut(s)	154, 171, 347, 497, 500, 518, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspLEI	GCGC	2 cut(s)	171, 752
AspS9I	GGNCC	2 cut(s)	709, 788
AsuHPI	GGTGA	2 cut(s)	584, 839
AvaII	GGWCC	2 cut(s)	709, 788
BalI	TGGCCA	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	235, 396
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	7 cut(s)	158, 166, 334, 484, 487, 530, 739
BccI	CCATC	3 cut(s)	144, 629, 821
BceAI	ACGGC	1 cut(s)	755
BciT130I	CCWGG	4 cut(s)	90, 293, 678, 792
BcoDI	GTCTC	2 cut(s)	170, 288
BfaI	CTAG	2 cut(s)	236, 321
BfoI	RGCGCY	1 cut(s)	753
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	7 cut(s)	155, 172, 348, 498, 501, 519, 753
BlsI	GCNGC	7 cut(s)	156, 173, 349, 499, 502, 520, 754
Bme1390I	CCNGG	4 cut(s)	90, 293, 678, 792
Bme18I	GGWCC	2 cut(s)	709, 788
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	709, 788
BmrFI	CCNGG	4 cut(s)	90, 293, 678, 792
BmsI	GCATC	4 cut(s)	130, 224, 244, 334
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	2 cut(s)	170, 288
BsaJI	CCNNGG	3 cut(s)	107, 677, 784
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	4 cut(s)	90, 293, 678, 792
BseDI	CCNNGG	3 cut(s)	107, 677, 784
BseGI	GGATG	3 cut(s)	98, 349, 700
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	6 cut(s)	283, 531, 558, 570, 607, 830
BseNI	ACTGG	1 cut(s)	850
BseXI	GCAGC	7 cut(s)	158, 166, 334, 484, 487, 530, 739
BseYI	CCCAGC	2 cut(s)	601, 655
Bsh1236I	CGCG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	135, 296
BsiHKAI	GWGCWC	2 cut(s)	235, 396
BslFI	GGGAC	1 cut(s)	694
BsmAI	GTCTC	2 cut(s)	170, 288
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	135, 296
Bso31I	GGTCTC	2 cut(s)	170, 288
Bsp1286I	GDGCHC	2 cut(s)	235, 396
Bsp1407I	TGTACA	2 cut(s)	22, 430
Bsp143I	GATC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	784
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	2 cut(s)	135, 296
BspCNI	CTCAG	6 cut(s)	282, 532, 559, 571, 606, 829
BspFNI	CGCG	1 cut(s)	804
BspMI	ACCTGC	1 cut(s)	111
BspTNI	GGTCTC	2 cut(s)	170, 288
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	2 cut(s)	22, 430
BsrI	ACTGG	1 cut(s)	850
BssECI	CCNNGG	3 cut(s)	107, 677, 784
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	107, 784
Bst2UI	CCWGG	4 cut(s)	90, 293, 678, 792
Bst4CI	ACNGT	2 cut(s)	43, 723
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstAUI	TGTACA	2 cut(s)	22, 430
BstC8I	GCNNGC	4 cut(s)	129, 133, 613, 617
BstDEI	CTNAG	6 cut(s)	269, 540, 567, 579, 593, 816
BstDSI	CCRYGG	1 cut(s)	784
BstF5I	GGATG	3 cut(s)	98, 349, 700
BstFNI	CGCG	1 cut(s)	804
BstH2I	RGCGCY	1 cut(s)	753
BstHHI	GCGC	2 cut(s)	171, 752
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	170, 288
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 410
BstNI	CCWGG	4 cut(s)	90, 293, 678, 792
BstSCI	CCNGG	4 cut(s)	88, 291, 676, 790
BstUI	CGCG	1 cut(s)	804
BstV1I	GCAGC	7 cut(s)	158, 166, 334, 484, 487, 530, 739
BstXI	CCANNNNNNTGG	1 cut(s)	791
BsuRI	GGCC	2 cut(s)	135, 296
BtgI	CCRYGG	1 cut(s)	784
BtgZI	GCGATG	1 cut(s)	819
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	98, 349, 700
BtsIMutI	CAGTG	1 cut(s)	601
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	129, 133, 613, 617
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	171, 752
Cfr13I	GGNCC	2 cut(s)	709, 788
CseI	GACGC	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	790
Csp6I	GTAC	3 cut(s)	23, 431, 800
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	5 cut(s)	467, 700, 706, 736, 785
CviQI	GTAC	3 cut(s)	23, 431, 800
DdeI	CTNAG	6 cut(s)	269, 540, 567, 579, 593, 816
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	107, 784
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	396
Eco31I	GGTCTC	2 cut(s)	170, 288
Eco47I	GGWCC	2 cut(s)	709, 788
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	821
EcoICRI	GAGCTC	1 cut(s)	394
EcoRII	CCWGG	4 cut(s)	88, 291, 676, 790
EcoT14I	CCWWGG	2 cut(s)	107, 784
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	107, 784
FaeI	CATG	5 cut(s)	470, 703, 709, 739, 788
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	5 cut(s)	466, 699, 705, 735, 784
Fnu4HI	GCNGC	7 cut(s)	155, 172, 348, 498, 501, 519, 753
FokI	GGATG	3 cut(s)	105, 356, 707
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	7 cut(s)	155, 172, 348, 498, 501, 519, 753
FspBI	CTAG	2 cut(s)	236, 321
GlaI	GCGC	2 cut(s)	170, 751
GluI	GCNGC	7 cut(s)	155, 172, 348, 498, 501, 519, 753
GsaI	CCCAGC	2 cut(s)	605, 659
HaeII	RGCGCY	1 cut(s)	753
HaeIII	GGCC	2 cut(s)	135, 296
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	2 cut(s)	171, 752
Hin1II	CATG	5 cut(s)	470, 703, 709, 739, 788
Hin6I	GCGC	2 cut(s)	169, 750
HinP1I	GCGC	2 cut(s)	169, 750
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	3 cut(s)	337, 581, 820
HphI	GGTGA	2 cut(s)	584, 839
Hpy166II	GTNNAC	2 cut(s)	23, 448
Hpy188I	TCNGA	1 cut(s)	819
Hpy188III	TCNNGA	3 cut(s)	83, 341, 824
Hpy8I	GTNNAC	2 cut(s)	23, 448
HpyAV	CCTTC	1 cut(s)	733
HpyCH4III	ACNGT	2 cut(s)	43, 723
HpyCH4IV	ACGT	2 cut(s)	165, 195
HpyCH4V	TGCA	5 cut(s)	154, 215, 374, 503, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 410
HpyF3I	CTNAG	6 cut(s)	269, 540, 567, 579, 593, 816
HpySE526I	ACGT	2 cut(s)	165, 195
Hsp92II	CATG	5 cut(s)	470, 703, 709, 739, 788
HspAI	GCGC	2 cut(s)	169, 750
Kzo9I	GATC	1 cut(s)	31
Lsp1109I	GCAGC	7 cut(s)	158, 166, 334, 484, 487, 530, 739
LweI	GCATC	4 cut(s)	130, 224, 244, 334
MabI	ACCWGGT	1 cut(s)	790
MaeI	CTAG	2 cut(s)	236, 321
MaeII	ACGT	2 cut(s)	165, 195
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	4 cut(s)	137, 398, 556, 827
MfeI	CAATTG	2 cut(s)	158, 627
MhlI	GDGCHC	2 cut(s)	235, 396
MlsI	TGGCCA	1 cut(s)	135
MluCI	AATT	6 cut(s)	7, 158, 369, 555, 627, 744
MluNI	TGGCCA	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	6 cut(s)	504, 562, 568, 697, 766, 775
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	2 cut(s)	204, 558
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	135
MspR9I	CCNGG	4 cut(s)	90, 293, 678, 792
MunI	CAATTG	2 cut(s)	158, 627
MvaI	CCWGG	4 cut(s)	90, 293, 678, 792
MvnI	CGCG	1 cut(s)	804
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 410
NcoI	CCATGG	1 cut(s)	784
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	5 cut(s)	470, 703, 709, 739, 788
NmuCI	GTSAC	1 cut(s)	715
PceI	AGGCCT	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	337, 820
PflFI	GACNNNGTC	1 cut(s)	707
PkrI	GCNGC	7 cut(s)	156, 173, 349, 499, 502, 520, 754
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	396
Psp6I	CCWGG	4 cut(s)	88, 291, 676, 790
PspFI	CCCAGC	2 cut(s)	601, 655
PspGI	CCWGG	4 cut(s)	88, 291, 676, 790
PspPI	GGNCC	2 cut(s)	709, 788
PstNI	CAGNNNCTG	1 cut(s)	539
PsyI	GACNNNGTC	1 cut(s)	707
RsaI	GTAC	3 cut(s)	24, 432, 801
RsaNI	GTAC	3 cut(s)	23, 431, 800
RseI	CAYNNNNRTG	1 cut(s)	704
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	204, 558
SatI	GCNGC	7 cut(s)	155, 172, 348, 498, 501, 519, 753
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	2 cut(s)	709, 788
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	4 cut(s)	90, 293, 678, 792
SduI	GDGCHC	2 cut(s)	235, 396
SexAI	ACCWGGT	1 cut(s)	790
SfaNI	GCATC	4 cut(s)	130, 224, 244, 334
SinI	GGWCC	2 cut(s)	709, 788
SmiMI	CAYNNNNRTG	1 cut(s)	704
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	7, 158, 369, 555, 627, 744
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	2 cut(s)	236, 321
SstI	GAGCTC	1 cut(s)	396
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	88, 291, 676, 790
StyI	CCWWGG	2 cut(s)	107, 784
TaaI	ACNGT	2 cut(s)	43, 723
TaiI	ACGT	2 cut(s)	168, 198
TaqI	TCGA	1 cut(s)	396
TasI	AATT	6 cut(s)	7, 158, 369, 555, 627, 744
TatI	WGTACW	2 cut(s)	22, 430
TfiI	GAWTC	2 cut(s)	337, 820
Tru1I	TTAA	2 cut(s)	204, 558
Tru9I	TTAA	2 cut(s)	204, 558
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	7 cut(s)	154, 171, 347, 497, 500, 518, 752
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	381, 497, 501, 540, 752
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	1 cut(s)	601
Tth111I	GACNNNGTC	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	709, 788
XspI	CTAG	2 cut(s)	236, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.