Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008999

Physical Location & Seq

Genomic Coordinates Reverse (-)

235197 .. 236968

Gene Structure 1772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTCCGATGGTTATCGTAGTTCTAAGAAGACGGATACTATCTGCGAAGATGTTTGTGGACAGGAAGGTTCTCGAGCAGGCAAGGCCATTTCAAGGCTTAGATGTGTTCTAAGAGGACTCGATTTCAAAACATTCCTGTTTCTCTTCACTCTCCTGCCACTCTTCATCTTCGGCATCTATCTACACGGCCAGAAGATCACATATTTCTTGAGACCTCTATGGGAATCACCTCCTAAACCTTTTAACATCCTTCCGCATTACTATCACGAGAACACTTCCATGGAATTGCTCTGCAATCTTCATGGCTGGAAACTCCGCGAATCTCCAAGAAGAGTCTTTGATGCTGCCTTGTTCAGTAACGAGATCGATATGCTCACTCTCCGTTGGAATGAGTTAAATCCTTACATTACTCAGTTTGTGCTTCTCGAATCTAACTCAACTTTCACCGGACTGTCAAAACAGTTGGCTTTCGCAGACAACAGGGAGAAGAATTTCAAATTCGTTGAGCCAAGGCTGACTTATGGGAACGTTGGAGGAAGGTTCAAGAAAGGCGAAAACCCCTTTGTGGAGGAATCATTCCAAAGGCTTGCACTTGACCAGTTGATCAAGCTCGCAGGTATAAAAGAAGATGATCTTTTGATAATGTCGGATGTCGATGAGATCCCGAGCGGCCATACCATCAATCTGCTTAGATGGTGTGACGGGTTCCCACCGATCCTTCATCTTCAGTTGAGAAACTACCTCTACTCATATGAGTACTATGTCGATAGCAAAAGCTGGAGAGCTTCGGTTCATCTCTACAAGCCTGGGAAAACTCGGTGCGCTCATTTCCGGCAAAGCAACAATCTTTTGACAGATTCAGGTTGGCATTGCAGTTTCTGTTTCAGACACATCAATGACTTCGTGTTCAAGATGAAAGCTTATAGCCATACTGACCGGGTTAGATTCTTACATTATCTGAACCCGAGACGAATCCAAGACATTATCTGCAAAGGAACTGATCTTTTCGATATGCTTCCTGAAGAACACACATTCAGGGAGATTATCGGCAAACTTGGTCCGATTCCACGGTCTTATTCAGCTGTTCATCTCCCTGGATACTTGATTCAGAATGCTGATAGCTACAAGTACTTATTACCTGGGAACTGCAAACGAGAATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

388

Amino Acids

45.32

Weight (kDa)

8.86

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	40 - 386	1.8e-178	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01620 AT3G27540 AT5G14480
fragaria_vesca	FvH4_6g51700
malus_domestica	MD09G1023400.v1.1 MD17G1022900.v1.1
prunus_persica	Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1
pyrus_communis	pycom111g01950 pycom17g01960
rosa_chinensis	RchiOBHm_Chr2g0173231
rosa_laevigata	RLG00000022172
rosa_multiflora	Rmu_sc0000860.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079100
rosa_rugosa	Rorug02G0566700
rosa_samantha	Rh2AG646600 Rh2BG657300 Rh2CG622500 Rh2DG670900
rosa_wichuraiana	Rw2G053110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	669
AccII	CGCG	1 cut(s)	318
AciI	CCGC	3 cut(s)	254, 316, 669
AclI	AACGTT	1 cut(s)	528
AclWI	GGATC	2 cut(s)	655, 709
AcoI	YGGCCR	2 cut(s)	187, 670
AcsI	RAATTY	2 cut(s)	490, 497
AcuI	CTGAAG	2 cut(s)	710, 1041
AfaI	GTAC	2 cut(s)	758, 1130
AfiI	CCNNNNNNNGG	2 cut(s)	93, 565
AgsI	TTSAA	5 cut(s)	93, 127, 496, 544, 910
AjnI	CCWGG	3 cut(s)	805, 1093, 1138
AluBI	AGCT	6 cut(s)	610, 777, 785, 920, 1082, 1122
AluI	AGCT	6 cut(s)	610, 777, 785, 920, 1082, 1122
Alw26I	GTCTC	2 cut(s)	205, 961
AlwI	GGATC	2 cut(s)	655, 709
AlwNI	CAGNNNCTG	1 cut(s)	879
Ama87I	CYCGRG	3 cut(s)	72, 664, 964
AoxI	GGCC	3 cut(s)	84, 187, 670
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	490, 497
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	1 cut(s)	1058
AsuC2I	CCSGG	1 cut(s)	938
AsuHPI	GGTGA	2 cut(s)	219, 436
AvaI	CYCGRG	3 cut(s)	72, 664, 964
AvaII	GGWCC	1 cut(s)	1058
BauI	CACGAG	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	2, 686, 687
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	3 cut(s)	807, 1095, 1140
BciVI	GTATCC	2 cut(s)	28, 1091
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	938
BcoDI	GTCTC	2 cut(s)	205, 961
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	2 cut(s)	28, 1091
BisI	GCNGC	2 cut(s)	345, 670
BlsI	GCNGC	2 cut(s)	346, 671
BmcAI	AGTACT	2 cut(s)	758, 1130
Bme1390I	CCNGG	4 cut(s)	807, 938, 1095, 1140
Bme18I	GGWCC	1 cut(s)	1058
BmeT110I	CYCGRG	3 cut(s)	72, 664, 964
BmgT120I	GGNCC	1 cut(s)	1058
BmiI	GGNNCC	1 cut(s)	707
BmrFI	CCNGG	4 cut(s)	807, 938, 1095, 1140
BmsI	GCATC	2 cut(s)	183, 331
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	799
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	938
Bsa29I	ATCGAT	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	6 cut(s)	279, 509, 806, 1067, 1093, 1139
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 565
Bse1I	ACTGG	1 cut(s)	598
Bse3DI	GCAATG	1 cut(s)	868
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	3 cut(s)	807, 1095, 1140
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	6 cut(s)	279, 509, 806, 1067, 1093, 1139
BseGI	GGATG	2 cut(s)	246, 655
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	93, 565
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	598
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	86, 189, 672
BshVI	ATCGAT	1 cut(s)	366
BsiHKCI	CYCGRG	3 cut(s)	72, 664, 964
BsiSI	CCGG	3 cut(s)	447, 832, 937
BslI	CCNNNNNNNGG	2 cut(s)	93, 565
BsmAI	GTCTC	2 cut(s)	205, 961
BsmBI	CGTCTC	1 cut(s)	961
BsmI	GAATGC	1 cut(s)	1117
BsnI	GGCC	3 cut(s)	86, 189, 672
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	3 cut(s)	72, 664, 964
Bsp143I	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	3 cut(s)	254, 316, 669
BspANI	GGCC	3 cut(s)	86, 189, 672
BspCNI	CTCAG	1 cut(s)	424
BspDI	ATCGAT	1 cut(s)	366
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	707
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	655, 709
BspTNI	GGTCTC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	669
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	6 cut(s)	279, 509, 806, 1067, 1093, 1139
BssMI	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	2 cut(s)	279, 509
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	3 cut(s)	807, 1095, 1140
Bst4CI	ACNGT	3 cut(s)	453, 462, 1071
Bst6I	CTCTTC	3 cut(s)	149, 167, 325
BstC8I	GCNNGC	3 cut(s)	79, 588, 612
BstDEI	CTNAG	5 cut(s)	24, 98, 110, 411, 689
BstDSI	CCRYGG	2 cut(s)	279, 1067
BstF5I	GGATG	2 cut(s)	246, 655
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	7 cut(s)	198, 366, 606, 634, 663, 717, 1003
BstMAI	GTCTC	2 cut(s)	205, 961
BstMBI	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	3 cut(s)	807, 1095, 1140
BstSCI	CCNGG	4 cut(s)	805, 936, 1093, 1138
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	660
Bsu15I	ATCGAT	1 cut(s)	366
BsuI	GTATCC	2 cut(s)	28, 1091
BsuRI	GGCC	3 cut(s)	86, 189, 672
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	2 cut(s)	279, 1067
BtsCI	GGATG	2 cut(s)	246, 655
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	79, 588, 612
CaiI	CAGNNNCTG	1 cut(s)	879
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	1058
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	757, 1129
CviAII	CATG	2 cut(s)	280, 302
CviQI	GTAC	2 cut(s)	757, 1129
DdeI	CTNAG	5 cut(s)	24, 98, 110, 411, 689
DpnI	GATC	7 cut(s)	197, 365, 605, 633, 662, 716, 1002
DpnII	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
EaeI	YGGCCR	2 cut(s)	187, 670
Eam1104I	CTCTTC	3 cut(s)	149, 167, 325
EarI	CTCTTC	3 cut(s)	149, 167, 325
Eco130I	CCWWGG	2 cut(s)	279, 509
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	1058
Eco57I	CTGAAG	2 cut(s)	710, 1041
Eco88I	CYCGRG	3 cut(s)	72, 664, 964
EcoRII	CCWGG	3 cut(s)	805, 1093, 1138
EcoT14I	CCWWGG	2 cut(s)	279, 509
ErhI	CCWWGG	2 cut(s)	279, 509
Esp3I	CGTCTC	1 cut(s)	961
FaeI	CATG	2 cut(s)	283, 305
FalI	AAGNNNNNCTT	4 cut(s)	502, 534, 618, 650
FatI	CATG	2 cut(s)	279, 301
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	345, 670
FokI	GGATG	2 cut(s)	233, 662
Fsp4HI	GCNGC	2 cut(s)	345, 670
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	2 cut(s)	345, 670
GsuI	CTGGAG	1 cut(s)	799
HaeIII	GGCC	3 cut(s)	86, 189, 672
HapII	CCGG	3 cut(s)	447, 832, 937
HhaI	GCGC	1 cut(s)	824
Hin1II	CATG	2 cut(s)	283, 305
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HindIII	AAGCTT	1 cut(s)	918
HpaII	CCGG	3 cut(s)	447, 832, 937
HphI	GGTGA	2 cut(s)	219, 436
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	6 cut(s)	7, 649, 887, 960, 1062, 1110
Hpy188III	TCNNGA	8 cut(s)	72, 208, 266, 425, 544, 664, 910, 1019
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	59, 260, 531, 728
HpyCH4III	ACNGT	3 cut(s)	453, 462, 1071
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	5 cut(s)	294, 590, 873, 990, 1149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	5 cut(s)	24, 98, 110, 411, 689
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	2 cut(s)	283, 305
HspAI	GCGC	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	183, 331
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	356, 698
MalI	GATC	7 cut(s)	197, 365, 605, 633, 662, 716, 1002
MbiI	CCGCTC	1 cut(s)	669
MboI	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
MflI	RGATCY	1 cut(s)	660
MluCI	AATT	3 cut(s)	284, 490, 497
MlyI	GAGTC	2 cut(s)	111, 342
MmeI	TCCRAC	3 cut(s)	365, 511, 627
MnlI	CCTC	6 cut(s)	107, 225, 240, 527, 562, 752
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	2 cut(s)	243, 395
MslI	CAYNNNNRTG	2 cut(s)	278, 894
MspA1I	CMGCKG	1 cut(s)	1082
MspI	CCGG	3 cut(s)	447, 832, 937
MspR9I	CCNGG	4 cut(s)	807, 938, 1095, 1140
Mva1269I	GAATGC	1 cut(s)	1117
MvaI	CCWGG	3 cut(s)	807, 1095, 1140
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	938
NcoI	CCATGG	1 cut(s)	279
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
NlaIII	CATG	2 cut(s)	283, 305
NlaIV	GGNNCC	1 cut(s)	707
NmuCI	GTSAC	1 cut(s)	698
PaeR7I	CTCGAG	1 cut(s)	72
PctI	GAATGC	1 cut(s)	1117
PdmI	GAANNNNTTC	1 cut(s)	491
PkrI	GCNGC	2 cut(s)	346, 671
PleI	GAGTC	2 cut(s)	111, 341
PpsI	GAGTC	2 cut(s)	111, 341
Psp1406I	AACGTT	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	805, 1093, 1138
PspGI	CCWGG	3 cut(s)	805, 1093, 1138
PspN4I	GGNNCC	1 cut(s)	707
PspPI	GGNCC	1 cut(s)	1058
PstNI	CAGNNNCTG	1 cut(s)	879
PsuI	RGATCY	1 cut(s)	660
PvuII	CAGCTG	1 cut(s)	1082
RsaI	GTAC	2 cut(s)	758, 1130
RsaNI	GTAC	2 cut(s)	757, 1129
RseI	CAYNNNNRTG	2 cut(s)	278, 894
SaqAI	TTAA	2 cut(s)	243, 395
SatI	GCNGC	2 cut(s)	345, 670
Sau3AI	GATC	7 cut(s)	195, 363, 603, 631, 660, 714, 1000
Sau96I	GGNCC	1 cut(s)	1058
ScaI	AGTACT	2 cut(s)	758, 1130
SchI	GAGTC	2 cut(s)	111, 342
ScrFI	CCNGG	4 cut(s)	807, 938, 1095, 1140
SfaNI	GCATC	2 cut(s)	183, 331
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	1058
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	2 cut(s)	278, 894
SmlI	CTYRAG	2 cut(s)	72, 208
SmoI	CTYRAG	2 cut(s)	72, 208
Sse9I	AATT	3 cut(s)	284, 490, 497
SsiI	CCGC	3 cut(s)	254, 316, 669
StyD4I	CCNGG	4 cut(s)	805, 936, 1093, 1138
StyI	CCWWGG	2 cut(s)	279, 509
TaaI	ACNGT	3 cut(s)	453, 462, 1071
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	7 cut(s)	73, 120, 366, 426, 654, 765, 1008
TasI	AATT	3 cut(s)	284, 490, 497
TatI	WGTACW	2 cut(s)	756, 1128
TauI	GCSGC	1 cut(s)	672
Tru1I	TTAA	2 cut(s)	243, 395
Tru9I	TTAA	2 cut(s)	243, 395
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	6 cut(s)	154, 290, 710, 782, 929, 1076
TspGWI	ACGGA	2 cut(s)	47, 371
VpaK11BI	GGWCC	1 cut(s)	1058
XapI	RAATTY	2 cut(s)	490, 497
XhoI	CTCGAG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	491
ZrmI	AGTACT	2 cut(s)	758, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.