Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000860.1

Orthogroup ID

OG0008999

Physical Location & Seq

Genomic Coordinates Reverse (-)

25946 .. 27772

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000860.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ctgggtgtttcagaatccggtaaagacggagaaaagaagagggtggtggaagaacagaagggggtgtattggacatttcccttttcttcatcactgttcattgccattttggtttatgaggcgaggtttgttttcaaaatcatgtctgatgggtattacagttccaagaagacagatgatatatgcgacgacgtttgtggagagggatcagaagcagcattgagcatgtccagactacgatgcgttttgcgggggttcgatttgaagacctatattttcgtttttgcagttcttccattatgcatcttcggtgtgtatttacatgggcagaaggtttcgtattttttacgacctctttgggaatctcctccgaagtctttcattgaacttccacactattatcatgagaatgtttcaatggagactctctgcagacttcatgggtggaagactcgtgagtcaccaagacgagtttatgatgcagttctcttcagtaatgaggtagacatccttacaattcggtggaatgaattatatccgtatgtcacccagtttgtgctgctggaatcaaactcaacatttactggcctgcccaaaccattggtttttgctaagaaccgggacaagtttaagtttgttgaagaccggctcacttatgtgacaactggaggaagatttaagaaaggcgagaacccattttatgaggaggcatttcaaagagtagcactagaccagcttctgagagtagccggtatagaagatgatgatctgctgataatgtctgatgttgacgagattcctagtgctcacacaattaatctcttgaggtggtgcgatgacatcccacctgttgttcatctcaggctgaggaactacttgtactctttcgagtattatgttgataaaaagagctggagggcatcagttcacaggtatcaaactggtaatactacatatgcgcacttcagacagagtgactaccttttgtcagatgcagggtggcattgtagcttttgtttccgccatatcagtgagttcatattcaagatgaaagcttacagccactatgatcgggtgaggttctctcattacttgaaccctaaaaggattcaggatgttatatgcaaaggggccgacctatttgacatgattcctgaggagtacacgtttaaggagattattggaaagatgggacctattcctagatcttattcagcagttcatcttcctgcatatttgctgaacaatgctgagaagtacaagtacctgctgcctggaaactgcaagagggaaaatggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

433

Amino Acids

50.67

Weight (kDa)

7.97

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01620 AT3G27540 AT5G14480
fragaria_vesca	FvH4_6g51700
malus_domestica	MD09G1023400.v1.1 MD17G1022900.v1.1
prunus_persica	Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1
pyrus_communis	pycom111g01950 pycom17g01960
rosa_chinensis	RchiOBHm_Chr2g0173231
rosa_laevigata	RLG00000022172
rosa_multiflora	Rmu_sc0000860.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079100
rosa_rugosa	Rorug02G0566700
rosa_samantha	Rh2AG646600 Rh2BG657300 Rh2CG622500 Rh2DG670900
rosa_wichuraiana	Rw2G053110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc16I	TGCGCA	1 cut(s)	960
Acc36I	ACCTGC	1 cut(s)	1275
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	2 cut(s)	250, 1021
AclWI	GGATC	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	475, 949
AfaI	GTAC	4 cut(s)	881, 1163, 1259, 1265
AflIII	ACRYGT	1 cut(s)	1164
AgsI	TTSAA	8 cut(s)	136, 265, 386, 417, 641, 716, 1045, 1096
AjnI	CCWGG	1 cut(s)	1273
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	4 cut(s)	736, 912, 1011, 1055
AluI	AGCT	4 cut(s)	736, 912, 1011, 1055
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	739
AoxI	GGCC	2 cut(s)	586, 1131
ApeKI	GCWGC	3 cut(s)	215, 559, 1270
AseI	ATTAAT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	2 cut(s)	1131, 1193
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	3 cut(s)	453, 538, 1087
AvaII	GGWCC	1 cut(s)	1193
AxyI	CCTNAGG	1 cut(s)	1155
BarI	GAAGNNNNNNTAC	2 cut(s)	1247, 1279
BauI	CACGAG	1 cut(s)	453
BbsI	GAAGAC	4 cut(s)	176, 272, 455, 648
Bbv12I	GWGCWC	1 cut(s)	808
BbvCI	CCTCAGC	1 cut(s)	866
BbvI	GCAGC	3 cut(s)	227, 546, 1257
BccI	CCATC	2 cut(s)	143, 1183
BciT130I	CCWGG	1 cut(s)	1275
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	3 cut(s)	728, 801, 1203
BfmI	CTRYAG	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	1275
BglII	AGATCT	1 cut(s)	1205
BisI	GCNGC	3 cut(s)	216, 560, 1271
BlsI	GCNGC	3 cut(s)	217, 561, 1272
Bme1390I	CCNGG	2 cut(s)	620, 1275
Bme18I	GGWCC	1 cut(s)	1193
BmgT120I	GGNCC	2 cut(s)	1131, 1193
BmiI	GGNNCC	2 cut(s)	1132, 1194
BmrFI	CCNGG	2 cut(s)	620, 1275
BmrI	ACTGGG	1 cut(s)	544
BmsI	GCATC	5 cut(s)	230, 312, 469, 929, 982
BmuI	ACTGGG	1 cut(s)	544
BpiI	GAAGAC	4 cut(s)	176, 272, 455, 648
BplI	GAGNNNNNCTC	2 cut(s)	1069, 1101
BpmI	CTGGAG	2 cut(s)	687, 934
Bpu10I	CCTNAGC	1 cut(s)	866
BpuEI	CTTGAG	1 cut(s)	844
BpuMI	CCSGG	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	1151, 1181
Bse118I	RCCGGY	2 cut(s)	645, 749
Bse1I	ACTGG	4 cut(s)	550, 589, 670, 946
Bse21I	CCTNAGG	1 cut(s)	1155
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	1275
BseGI	GGATG	3 cut(s)	507, 840, 1120
BseJI	GATNNNNATC	1 cut(s)	765
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	5 cut(s)	731, 857, 874, 1146, 1242
BseNI	ACTGG	4 cut(s)	550, 589, 670, 946
BseRI	GAGGAG	3 cut(s)	357, 719, 1172
BseXI	GCAGC	3 cut(s)	227, 546, 1257
BshFI	GGCC	2 cut(s)	588, 1133
BsiHKAI	GWGCWC	1 cut(s)	808
BsiSI	CCGG	4 cut(s)	18, 619, 646, 750
BslFI	GGGAC	2 cut(s)	635, 1206
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	2 cut(s)	635, 1206
BsnI	GGCC	2 cut(s)	588, 1133
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp143I	GATC	4 cut(s)	206, 766, 1069, 1205
BspACI	CCGC	2 cut(s)	250, 1021
BspANI	GGCC	2 cut(s)	588, 1133
BspCNI	CTCAG	5 cut(s)	732, 858, 873, 1147, 1243
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	1132, 1194
BspMAI	CTGCAG	1 cut(s)	434
BspMI	ACCTGC	1 cut(s)	1275
BspPI	GGATC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	2 cut(s)	645, 749
BsrI	ACTGG	4 cut(s)	550, 589, 670, 946
BssAI	RCCGGY	2 cut(s)	645, 749
BssMI	GATC	4 cut(s)	206, 766, 1069, 1205
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	1275
Bst4CI	ACNGT	2 cut(s)	96, 161
Bst6I	CTCTTC	2 cut(s)	32, 494
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	6 cut(s)	612, 740, 860, 866, 1155, 1251
BstF5I	GGATG	3 cut(s)	507, 840, 1120
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	4 cut(s)	209, 769, 1072, 1208
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	206, 766, 1069, 1205
BstNI	CCWGG	1 cut(s)	1275
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	618, 1273
BstSFI	CTRYAG	1 cut(s)	430
BstV1I	GCAGC	3 cut(s)	227, 546, 1257
BstV2I	GAAGAC	4 cut(s)	176, 272, 455, 648
BstX2I	RGATCY	1 cut(s)	1205
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	1205
Bsu36I	CCTNAGG	1 cut(s)	1155
BsuRI	GGCC	2 cut(s)	588, 1133
BtgZI	GCGATG	1 cut(s)	849
BtsCI	GGATG	3 cut(s)	507, 840, 1120
BtsIMutI	CAGTG	2 cut(s)	92, 1036
BveI	ACCTGC	1 cut(s)	1275
Cac8I	GCNNGC	1 cut(s)	590
CaiI	CAGNNNCTG	1 cut(s)	739
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	1 cut(s)	961
Cfr10I	RCCGGY	2 cut(s)	645, 749
Cfr13I	GGNCC	2 cut(s)	1131, 1193
Csp6I	GTAC	4 cut(s)	880, 1162, 1258, 1264
CviAII	CATG	6 cut(s)	142, 226, 323, 404, 440, 1147
CviQI	GTAC	4 cut(s)	880, 1162, 1258, 1264
DdeI	CTNAG	6 cut(s)	612, 740, 860, 866, 1155, 1251
DpnI	GATC	4 cut(s)	208, 768, 1071, 1207
DpnII	GATC	4 cut(s)	206, 766, 1069, 1205
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	32, 494
EarI	CTCTTC	2 cut(s)	32, 494
EciI	GGCGGA	1 cut(s)	1010
Eco47I	GGWCC	1 cut(s)	1193
Eco57I	CTGAAG	2 cut(s)	475, 949
Eco81I	CCTNAGG	1 cut(s)	1155
EcoO109I	RGGNCCY	1 cut(s)	1193
EcoRII	CCWGG	1 cut(s)	1273
EcoT22I	ATGCAT	1 cut(s)	305
FaeI	CATG	6 cut(s)	145, 229, 326, 407, 443, 1150
FaqI	GGGAC	2 cut(s)	635, 1206
FatI	CATG	6 cut(s)	141, 225, 322, 403, 439, 1146
FauI	CCCGC	1 cut(s)	243
FauNDI	CATATG	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	216, 560, 1271
FokI	GGATG	3 cut(s)	494, 827, 1127
Fsp4HI	GCNGC	3 cut(s)	216, 560, 1271
FspAI	RTGCGCAY	1 cut(s)	960
FspBI	CTAG	3 cut(s)	728, 801, 1203
FspI	TGCGCA	1 cut(s)	960
GlaI	GCGC	1 cut(s)	960
GluI	GCNGC	3 cut(s)	216, 560, 1271
GsuI	CTGGAG	2 cut(s)	687, 934
HaeIII	GGCC	2 cut(s)	588, 1133
HapII	CCGG	4 cut(s)	18, 619, 646, 750
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	6 cut(s)	145, 229, 326, 407, 443, 1150
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	1053
HinfI	GANTC	9 cut(s)	14, 362, 424, 451, 458, 566, 796, 1108, 1150
HpaII	CCGG	4 cut(s)	18, 619, 646, 750
HphI	GGTGA	3 cut(s)	453, 538, 1087
Hpy166II	GTNNAC	4 cut(s)	505, 790, 928, 1164
Hpy188I	TCNGA	8 cut(s)	13, 148, 211, 372, 741, 784, 968, 991
Hpy188III	TCNNGA	7 cut(s)	231, 404, 455, 823, 1045, 1112, 1154
Hpy8I	GTNNAC	4 cut(s)	505, 790, 928, 1164
Hpy99I	CGWCG	2 cut(s)	191, 194
HpyAV	CCTTC	2 cut(s)	52, 325
HpyCH4III	ACNGT	2 cut(s)	96, 161
HpyCH4IV	ACGT	2 cut(s)	192, 1166
HpyCH4V	TGCA	8 cut(s)	287, 303, 432, 482, 995, 1125, 1232, 1284
HpyF3I	CTNAG	6 cut(s)	612, 740, 860, 866, 1155, 1251
HpySE526I	ACGT	2 cut(s)	192, 1166
Hsp92II	CATG	6 cut(s)	145, 229, 326, 407, 443, 1150
HspAI	GCGC	1 cut(s)	959
Kzo9I	GATC	4 cut(s)	206, 766, 1069, 1205
Lsp1109I	GCAGC	3 cut(s)	227, 546, 1257
LweI	GCATC	5 cut(s)	230, 312, 469, 929, 982
MaeI	CTAG	3 cut(s)	728, 801, 1203
MaeII	ACGT	2 cut(s)	192, 1166
MaeIII	GTNAC	4 cut(s)	459, 544, 658, 974
MalI	GATC	4 cut(s)	208, 768, 1071, 1207
MboI	GATC	4 cut(s)	206, 766, 1069, 1205
MflI	RGATCY	1 cut(s)	1205
MhlI	GDGCHC	1 cut(s)	808
MluCI	AATT	3 cut(s)	516, 530, 813
MlyI	GAGTC	3 cut(s)	418, 445, 467
Mph1103I	ATGCAT	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	4 cut(s)	630, 678, 816, 1170
MslI	CAYNNNNRTG	3 cut(s)	408, 656, 1029
MspI	CCGG	4 cut(s)	18, 619, 646, 750
MspR9I	CCNGG	2 cut(s)	620, 1275
MvaI	CCWGG	1 cut(s)	1275
NciI	CCSGG	1 cut(s)	620
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	4 cut(s)	206, 766, 1069, 1205
NlaIII	CATG	6 cut(s)	145, 229, 326, 407, 443, 1150
NlaIV	GGNNCC	2 cut(s)	1132, 1194
NmuCI	GTSAC	4 cut(s)	459, 544, 658, 974
NsbI	TGCGCA	1 cut(s)	960
NsiI	ATGCAT	1 cut(s)	305
NspI	RCATGY	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	656
PagI	TCATGA	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	6 cut(s)	14, 362, 566, 796, 1108, 1150
PkrI	GCNGC	3 cut(s)	217, 561, 1272
PleI	GAGTC	3 cut(s)	418, 445, 466
PpsI	GAGTC	3 cut(s)	418, 445, 466
PpuMI	RGGWCCY	1 cut(s)	1193
PshBI	ATTAAT	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	1193
Psp6I	CCWGG	1 cut(s)	1273
PspGI	CCWGG	1 cut(s)	1273
PspN4I	GGNNCC	2 cut(s)	1132, 1194
PspPI	GGNCC	2 cut(s)	1131, 1193
PspPPI	RGGWCCY	1 cut(s)	1193
PsrI	GAACNNNNNNTAC	2 cut(s)	863, 895
PstI	CTGCAG	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	1205
RsaI	GTAC	4 cut(s)	881, 1163, 1259, 1265
RsaNI	GTAC	4 cut(s)	880, 1162, 1258, 1264
RseI	CAYNNNNRTG	3 cut(s)	408, 656, 1029
SaqAI	TTAA	4 cut(s)	630, 678, 816, 1170
SatI	GCNGC	3 cut(s)	216, 560, 1271
Sau3AI	GATC	4 cut(s)	206, 766, 1069, 1205
Sau96I	GGNCC	2 cut(s)	1131, 1193
SchI	GAGTC	3 cut(s)	418, 445, 467
ScrFI	CCNGG	2 cut(s)	620, 1275
SduI	GDGCHC	1 cut(s)	808
SfaNI	GCATC	5 cut(s)	230, 312, 469, 929, 982
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	1193
SmiMI	CAYNNNNRTG	3 cut(s)	408, 656, 1029
SmlI	CTYRAG	1 cut(s)	823
SmoI	CTYRAG	1 cut(s)	823
Sse9I	AATT	3 cut(s)	516, 530, 813
SsiI	CCGC	2 cut(s)	250, 1021
SspMI	CTAG	3 cut(s)	728, 801, 1203
StyD4I	CCNGG	2 cut(s)	618, 1273
TaaI	ACNGT	2 cut(s)	96, 161
TaiI	ACGT	2 cut(s)	195, 1169
TaqI	TCGA	2 cut(s)	258, 888
TasI	AATT	3 cut(s)	516, 530, 813
TatI	WGTACW	3 cut(s)	879, 1161, 1257
TfiI	GAWTC	6 cut(s)	14, 362, 566, 796, 1108, 1150
Tru1I	TTAA	4 cut(s)	630, 678, 816, 1170
Tru9I	TTAA	4 cut(s)	630, 678, 816, 1170
TscAI	CASTG	2 cut(s)	99, 1036
TseFI	GTSAC	4 cut(s)	459, 544, 658, 974
TseI	GCWGC	3 cut(s)	215, 559, 1270
Tsp45I	GTSAC	4 cut(s)	459, 544, 658, 974
TspDTI	ATGAA	9 cut(s)	78, 88, 370, 428, 543, 845, 1027, 1064, 1211
TspGWI	ACGGA	2 cut(s)	42, 528
TspRI	CASTG	2 cut(s)	99, 1036
VpaK11BI	GGWCC	1 cut(s)	1193
VspI	ATTAAT	1 cut(s)	816
XceI	RCATGY	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	3 cut(s)	728, 801, 1203
Zsp2I	ATGCAT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.