FvH4_6g51700

Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008999
Physical Location & Seq
Reverse (-)
38279180 .. 38280921
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51700.t1

Sequence Viewer

Length: 1161 bp
ATGTCTGATGGGTATTACAGTTCTAAGAAAACGGATGATATTTGCGACGACGTTTGTGGAGAGGGATCAGAAGCAGCATTGAGCATGTCCAGACTCCGATGCATTCTGCGGGGGTTCGATTTGAAGACTTACATTTTCGTTTTTGCAGTTCTTCCATTATGCATCTTGGGTGTGTATTTACATGGGCAGAAGGTTTCATATTTTTTACGACCTATTTGGGAATCTCCTCCAAAGTCTTTCATTGAACTTCCACACTACTATCATGAGAATGTGTCGATGGAGACTCTCTGCAGACTTCATGGGTGGACGACTCGTGAGTCACCAAGACGGGTTTATGATGCAGTTCTCTTCAGTAATGAGGTAGACATCCTTACAATCCGGTGGAATGAATTGTATCCGTATGTCACACAGTTTGTGCTGTTGGAATCAAACTCGACATTTACTGGCCTGCCCAAACCATTGGTCTTTTCTAAGAACCGGGACAAGTTTAAGTTTGTTGAAGACCGGCTAACTTATGTAACAACTGGAGGAAGATTTAAGAAAGGTGAGAACCCATTTTATGAGGAGGCATTTCAAAGAGTAGCACTAGACCAGCTTCTGAGAGTAGCTGGTATAGAAGATGATGATCTGCTGATAATGTCTGATGTTGACGAGATTCCTAGTGCCCACACAATTAATCTCTTGAGGTGGTGTGATGACATCCCACCTGTTATTCATCTCAGGCTGAAGAACTACTTGTACTCTTTTGAGTATTACGTTGATAAAAAGAGCTGGAGGGCATCAGTTCACAGGTATCAGACTGGCAATACTACATATGCGCACTTCAGACAGAGCGACTACCTTTTATCAGATGCCGGGTGGCATTGTAGTTTTTGTTTCCGTCATATCAGTGAATTCATCTTTAAGATGAAAGCTTACAGCCACTATGATCGTGTGAGGTTCTCTCATTACTTGAACCCTAAAAGGATTCAGGATGTGATATGCAAAGGGGCTGACCTATTTGACATGATTCCTGAGGAGTACACATTTAGGGAGATCATTGGAAAGATGGGACCTATTCCTAGATCTTATTCAGCAGTTCATCTTCCTGCATATTTGCTGAACAATGCTGAGAAGTACAAATACTTGTTGCCTGGAAACTGCAAGAGAGAAAATGGCTGA

Protein Analysis

387

Amino Acids

45.29

Weight (kDa)

7.18

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 39 - 384 2.8e-186 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 316
Acc16I TGCGCA 1 cut(s) 819
AccI GTMKAC 1 cut(s) 363
AciI CCGC 1 cut(s) 109
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 893
AcuI CTGAAG 3 cut(s) 334, 746, 808
AfaI GTAC 3 cut(s) 740, 1022, 1118
AgsI TTSAA 5 cut(s) 124, 245, 500, 575, 955
AjnI CCWGG 1 cut(s) 1132
AluBI AGCT 4 cut(s) 595, 608, 771, 914
AluI AGCT 4 cut(s) 595, 608, 771, 914
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 598
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 893
ArsI GACNNNNNNTTYG 2 cut(s) 447, 479
AseI ATTAAT 1 cut(s) 675
AspLEI GCGC 1 cut(s) 820
AspS9I GGNCC 1 cut(s) 1052
AsuC2I CCSGG 2 cut(s) 479, 856
AsuHPI GGTGA 2 cut(s) 312, 557
AvaII GGWCC 1 cut(s) 1052
AxyI CCTNAGG 1 cut(s) 1014
BaeGI GKGCMC 1 cut(s) 667
BarI GAAGNNNNNNTAC 2 cut(s) 1106, 1138
BauI CACGAG 1 cut(s) 312
BbsI GAAGAC 2 cut(s) 131, 507
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 2, 271, 1042
BciT130I CCWGG 1 cut(s) 1134
BciVI GTATCC 1 cut(s) 405
BcnI CCSGG 2 cut(s) 479, 856
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 3 cut(s) 587, 660, 1062
BfmI CTRYAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 405
BglII AGATCT 1 cut(s) 1064
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 3 cut(s) 479, 856, 1134
Bme18I GGWCC 1 cut(s) 1052
BmgT120I GGNCC 1 cut(s) 1052
BmiI GGNNCC 1 cut(s) 1053
BmrFI CCNGG 3 cut(s) 479, 856, 1134
BmsI GCATC 5 cut(s) 89, 171, 328, 788, 841
BpiI GAAGAC 2 cut(s) 131, 507
BplI GAGNNNNNCTC 2 cut(s) 928, 960
BpmI CTGGAG 2 cut(s) 546, 793
BpuEI CTTGAG 1 cut(s) 703
BpuMI CCSGG 2 cut(s) 479, 856
BsaBI GATNNNNATC 1 cut(s) 624
BsaWI WCCGGW 1 cut(s) 378
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 3 cut(s) 448, 529, 805
Bse21I CCTNAGG 1 cut(s) 1014
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 1 cut(s) 1134
BseGI GGATG 4 cut(s) 40, 366, 699, 979
BseJI GATNNNNATC 1 cut(s) 624
BseMII CTCAG 4 cut(s) 590, 733, 1005, 1101
BseNI ACTGG 3 cut(s) 448, 529, 805
BseRI GAGGAG 3 cut(s) 216, 578, 1031
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 447
BsiSI CCGG 4 cut(s) 379, 478, 505, 855
BslFI GGGAC 2 cut(s) 494, 1065
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 494, 1065
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 5 cut(s) 65, 625, 928, 1035, 1064
BspACI CCGC 1 cut(s) 109
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 4 cut(s) 591, 732, 1006, 1102
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 1053
BspMAI CTGCAG 1 cut(s) 293
BspPI GGATC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 504
BsrI ACTGG 3 cut(s) 448, 529, 805
BssAI RCCGGY 1 cut(s) 504
BssMI GATC 5 cut(s) 65, 625, 928, 1035, 1064
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 1134
Bst4CI ACNGT 2 cut(s) 20, 411
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 6 cut(s) 24, 471, 599, 719, 1014, 1110
BstF5I GGATG 4 cut(s) 40, 366, 699, 979
BstHHI GCGC 1 cut(s) 820
BstKTI GATC 5 cut(s) 68, 628, 931, 1038, 1067
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 5 cut(s) 65, 625, 928, 1035, 1064
BstNI CCWGG 1 cut(s) 1134
BstNSI RCATGY 1 cut(s) 88
BstSCI CCNGG 3 cut(s) 477, 854, 1132
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 667
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 131, 507
BstX2I RGATCY 1 cut(s) 1064
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 1064
Bsu36I CCTNAGG 1 cut(s) 1014
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 4 cut(s) 40, 366, 699, 979
BtsIMutI CAGTG 1 cut(s) 895
Cac8I GCNNGC 1 cut(s) 449
CaiI CAGNNNCTG 1 cut(s) 598
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 820
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 1052
Csp6I GTAC 3 cut(s) 739, 1021, 1117
CviAII CATG 5 cut(s) 85, 182, 263, 299, 1006
CviQI GTAC 3 cut(s) 739, 1021, 1117
DdeI CTNAG 6 cut(s) 24, 471, 599, 719, 1014, 1110
DpnI GATC 5 cut(s) 67, 627, 930, 1037, 1066
DpnII GATC 5 cut(s) 65, 625, 928, 1035, 1064
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 1052
Eco57I CTGAAG 3 cut(s) 334, 746, 808
Eco81I CCTNAGG 1 cut(s) 1014
EcoO109I RGGNCCY 1 cut(s) 1052
EcoRI GAATTC 1 cut(s) 893
EcoRII CCWGG 1 cut(s) 1132
EcoT22I ATGCAT 2 cut(s) 104, 164
FaeI CATG 5 cut(s) 88, 185, 266, 302, 1009
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 2 cut(s) 494, 1065
FatI CATG 5 cut(s) 84, 181, 262, 298, 1005
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 814
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 4 cut(s) 47, 353, 686, 986
Fsp4HI GCNGC 1 cut(s) 75
FspAI RTGCGCAY 1 cut(s) 819
FspBI CTAG 3 cut(s) 587, 660, 1062
FspI TGCGCA 1 cut(s) 819
GlaI GCGC 1 cut(s) 819
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 2 cut(s) 546, 793
HaeIII GGCC 1 cut(s) 447
HapII CCGG 4 cut(s) 379, 478, 505, 855
HhaI GCGC 1 cut(s) 820
Hin1II CATG 5 cut(s) 88, 185, 266, 302, 1009
Hin6I GCGC 1 cut(s) 818
HinP1I GCGC 1 cut(s) 818
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 9 cut(s) 93, 221, 283, 310, 317, 425, 655, 967, 1009
HpaII CCGG 4 cut(s) 379, 478, 505, 855
HphI GGTGA 2 cut(s) 312, 557
Hpy166II GTNNAC 5 cut(s) 306, 364, 649, 787, 1023
Hpy188I TCNGA 8 cut(s) 7, 70, 98, 600, 643, 798, 827, 850
Hpy188III TCNNGA 6 cut(s) 90, 263, 314, 682, 971, 1013
Hpy8I GTNNAC 5 cut(s) 306, 364, 649, 787, 1023
Hpy99I CGWCG 2 cut(s) 50, 53
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 20, 411
HpyCH4IV ACGT 2 cut(s) 51, 756
HpyCH4V TGCA 8 cut(s) 102, 146, 162, 291, 341, 984, 1091, 1143
HpyF3I CTNAG 6 cut(s) 24, 471, 599, 719, 1014, 1110
HpySE526I ACGT 2 cut(s) 51, 756
Hsp92II CATG 5 cut(s) 88, 185, 266, 302, 1009
HspAI GCGC 1 cut(s) 818
Kzo9I GATC 5 cut(s) 65, 625, 928, 1035, 1064
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 5 cut(s) 89, 171, 328, 788, 841
MaeI CTAG 3 cut(s) 587, 660, 1062
MaeII ACGT 2 cut(s) 51, 756
MaeIII GTNAC 3 cut(s) 318, 403, 517
MalI GATC 5 cut(s) 67, 627, 930, 1037, 1066
MboI GATC 5 cut(s) 65, 625, 928, 1035, 1064
MboII GAAGA 8 cut(s) 136, 143, 340, 512, 543, 629, 739, 1076
MflI RGATCY 1 cut(s) 1064
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 3 cut(s) 389, 672, 893
MlyI GAGTC 4 cut(s) 87, 277, 304, 326
MmeI TCCRAC 1 cut(s) 402
Mph1103I ATGCAT 2 cut(s) 104, 164
MseI TTAA 4 cut(s) 489, 537, 675, 903
MslI CAYNNNNRTG 2 cut(s) 267, 888
MspI CCGG 4 cut(s) 379, 478, 505, 855
MspR9I CCNGG 3 cut(s) 479, 856, 1134
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 1134
NciI CCSGG 2 cut(s) 479, 856
NdeI CATATG 1 cut(s) 814
NdeII GATC 5 cut(s) 65, 625, 928, 1035, 1064
NlaIII CATG 5 cut(s) 88, 185, 266, 302, 1009
NlaIV GGNNCC 1 cut(s) 1053
NmuCI GTSAC 2 cut(s) 318, 403
NsbI TGCGCA 1 cut(s) 819
NsiI ATGCAT 2 cut(s) 104, 164
NspI RCATGY 1 cut(s) 88
PagI TCATGA 1 cut(s) 262
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 5 cut(s) 221, 425, 655, 967, 1009
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 4 cut(s) 87, 277, 304, 325
PpsI GAGTC 4 cut(s) 87, 277, 304, 325
PpuMI RGGWCCY 1 cut(s) 1052
PshBI ATTAAT 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 1052
Psp6I CCWGG 1 cut(s) 1132
PspGI CCWGG 1 cut(s) 1132
PspN4I GGNNCC 1 cut(s) 1053
PspPI GGNCC 1 cut(s) 1052
PspPPI RGGWCCY 1 cut(s) 1052
PsrI GAACNNNNNNTAC 2 cut(s) 722, 754
PstI CTGCAG 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 1064
RsaI GTAC 3 cut(s) 740, 1022, 1118
RsaNI GTAC 3 cut(s) 739, 1021, 1117
RseI CAYNNNNRTG 2 cut(s) 267, 888
SaqAI TTAA 4 cut(s) 489, 537, 675, 903
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 5 cut(s) 65, 625, 928, 1035, 1064
Sau96I GGNCC 1 cut(s) 1052
SchI GAGTC 4 cut(s) 87, 277, 304, 326
ScrFI CCNGG 3 cut(s) 479, 856, 1134
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 5 cut(s) 89, 171, 328, 788, 841
SfcI CTRYAG 1 cut(s) 289
SinI GGWCC 1 cut(s) 1052
SmiMI CAYNNNNRTG 2 cut(s) 267, 888
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 3 cut(s) 389, 672, 893
SsiI CCGC 1 cut(s) 109
SspMI CTAG 3 cut(s) 587, 660, 1062
StyD4I CCNGG 3 cut(s) 477, 854, 1132
TaaI ACNGT 2 cut(s) 20, 411
TaiI ACGT 2 cut(s) 54, 759
TaqI TCGA 3 cut(s) 117, 275, 434
TasI AATT 3 cut(s) 389, 672, 893
TatI WGTACW 3 cut(s) 738, 1020, 1116
TfiI GAWTC 5 cut(s) 221, 425, 655, 967, 1009
Tru1I TTAA 4 cut(s) 489, 537, 675, 903
Tru9I TTAA 4 cut(s) 489, 537, 675, 903
TscAI CASTG 1 cut(s) 895
TseFI GTSAC 2 cut(s) 318, 403
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 318, 403
TspDTI ATGAA 8 cut(s) 186, 229, 287, 402, 704, 886, 923, 1070
TspGWI ACGGA 3 cut(s) 47, 387, 869
TspRI CASTG 1 cut(s) 895
VpaK11BI GGWCC 1 cut(s) 1052
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 893
XceI RCATGY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 3 cut(s) 587, 660, 1062
Zsp2I ATGCAT 2 cut(s) 104, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.