Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008999

Physical Location & Seq

Genomic Coordinates Forward (+)

4667774 .. 4670213

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTCCGATGGATACTATAGTTCTAAGAAGACAGACGATATCTGCGATGATGTTTGTGGACAGGATGGTTCTCGAGCAGCCAAGGCCTTCTCTAGGGTTAGATGTGTACTACGAGGATTTGATTTCAAGACATATATCTTCTTCTTCACCATTGTCCCTATTTTCATCTTTGGAGTCTATTTGCATGGTCAGAAGCTCACATATTTCTTGAGACCGCTTTGGGAATCTCCACCAAAGCCGTTTCAAACGCTACCCCATTACTACCATGAGAACGCCTCCATGGCAACACTCTGCAGTCTTCATGGCTGGAAACACCGTGAATCTCCGAGAAGGGTCTTTGATGCTGTGTTGTTCAGCAATGAAGTTGATATGCTTACTATCCGGTGGAAAGAGCTTTATCCTTACATAACACAGTTTGTGATCCTTGAATCAAACTCTACTTTCACTGGTTTGCCTAAACCTTTGGTTTTCAATGGGAATCGAGCGAAGTTCGAGTTTGCTGAGCCGAGGCTGAGTTATGGGAACATTGCAGGACGATTCAAGAAAGGAGAAAACCCGTTTGTGGAAGAAGCTTACCAGAGGATTGCATTGGATCAGCTGATCAGACTGGCTGGTATAGAAGAAGATGATCTGTTGATAATGTCTGATGTTGATGAGATTCCTAGCGCTCATACCATCAATCTGCTTAGATGGTGCGATGGATACCCACCGATTCTTCATCTTCAGTTGAAAAACTACTTATACTCATTCGAGTACTTCGTTGACAACAAAAGCTGGAGAGCTTCTATTCATCAGTACAAGCCTGGGAAGACTCGATACGCTCATTTCCGTCAAGGCAACACTCTTTTAGCAGATTCTGGTTGGCATTGCAGTTTCTGTTTCAGGCACATCAGTGAGTTTATATTCAAGATGAAAGCGTACAGTCACAATGACCGGGTCAGATTCTCTCATTATCTAAACCCAAAAAGAATACAAGATGTGATCTGTAAAGGAACTGATCTGTTCGATATGCTTCCTGAAGAGTATACGTTCAGGGAAATCATCGGGAAACTAGGTCCAATCCCGCGGTCTTATTCCGCAGTTCATCTACCAGCTCATCTGATAGAAAAAGCTGAGAGTTACAAATACTTGTTACCTGGGAACTGCATAAGGGAAAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

387

Amino Acids

45.2

Weight (kDa)

8.57

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	40 - 385	1.6e-185	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01620 AT3G27540 AT5G14480
fragaria_vesca	FvH4_6g51700
malus_domestica	MD09G1023400.v1.1 MD17G1022900.v1.1
prunus_persica	Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1
pyrus_communis	pycom111g01950 pycom17g01960
rosa_chinensis	RchiOBHm_Chr2g0173231
rosa_laevigata	RLG00000022172
rosa_multiflora	Rmu_sc0000860.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079100
rosa_rugosa	Rorug02G0566700
rosa_samantha	Rh2AG646600 Rh2BG657300 Rh2CG622500 Rh2DG670900
rosa_wichuraiana	Rw2G053110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1025
AccII	CGCG	1 cut(s)	1066
AciI	CCGC	4 cut(s)	215, 1064, 1066, 1077
AclWI	GGATC	2 cut(s)	415, 600
AcuI	CTGAAG	2 cut(s)	707, 1038
AfaI	GTAC	4 cut(s)	108, 755, 797, 920
AfeI	AGCGCT	1 cut(s)	667
AfiI	CCNNNNNNNGG	2 cut(s)	93, 562
AgsI	TTSAA	7 cut(s)	127, 245, 428, 472, 541, 730, 907
AjnI	CCWGG	2 cut(s)	802, 1135
AleI	CACNNNNGTG	1 cut(s)	891
AluBI	AGCT	8 cut(s)	196, 394, 572, 598, 774, 782, 1094, 1112
AluI	AGCT	8 cut(s)	196, 394, 572, 598, 774, 782, 1094, 1112
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	2 cut(s)	415, 600
AlwNI	CAGNNNCTG	2 cut(s)	857, 876
Ama87I	CYCGRG	1 cut(s)	72
Aor51HI	AGCGCT	1 cut(s)	667
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	1055
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	1055
BaeI	ACNNNNGTAYC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	800, 832
BbsI	GAAGAC	3 cut(s)	35, 290, 815
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	5 cut(s)	2, 59, 683, 684, 692
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	804, 1137
BciVI	GTATCC	2 cut(s)	5, 695
BclI	TGATCA	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	935
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	3 cut(s)	93, 663, 1052
BfmI	CTRYAG	2 cut(s)	16, 292
BfoI	RGCGCY	1 cut(s)	669
BfuI	GTATCC	2 cut(s)	5, 695
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	78
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	79
BmcAI	AGTACT	1 cut(s)	755
Bme1390I	CCNGG	3 cut(s)	804, 935, 1137
Bme18I	GGWCC	1 cut(s)	1055
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	1055
BmrFI	CCNGG	3 cut(s)	804, 935, 1137
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	3 cut(s)	35, 290, 815
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	796
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	935
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	6 cut(s)	81, 279, 506, 803, 1064, 1136
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 562
Bse1I	ACTGG	2 cut(s)	451, 612
Bse3DI	GCAATG	3 cut(s)	364, 525, 865
BseBI	CCWGG	2 cut(s)	804, 1137
BseDI	CCNNGG	6 cut(s)	81, 279, 506, 803, 1064, 1136
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	93, 562
BseMI	GCAATG	3 cut(s)	364, 525, 865
BseMII	CTCAG	3 cut(s)	492, 503, 1104
BseNI	ACTGG	2 cut(s)	451, 612
BseXI	GCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	1066
BshFI	GGCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	382, 934
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	93, 562
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	72
Bsp143I	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
Bsp1720I	GCTNAGC	1 cut(s)	501
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	4 cut(s)	215, 1064, 1066, 1077
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	3 cut(s)	493, 504, 1105
BspFNI	CGCG	1 cut(s)	1066
BspMAI	CTGCAG	1 cut(s)	296
BspPI	GGATC	2 cut(s)	415, 600
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	3 cut(s)	364, 525, 865
BsrI	ACTGG	2 cut(s)	451, 612
BssECI	CCNNGG	6 cut(s)	81, 279, 506, 803, 1064, 1136
BssMI	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
BssNAI	GTATAC	1 cut(s)	1026
BssT1I	CCWWGG	2 cut(s)	81, 279
Bst1107I	GTATAC	1 cut(s)	1026
Bst2UI	CCWGG	2 cut(s)	804, 1137
Bst4CI	ACNGT	3 cut(s)	317, 414, 923
Bst6I	CTCTTC	1 cut(s)	1014
BstDEI	CTNAG	5 cut(s)	24, 501, 512, 686, 1113
BstDSI	CCRYGG	2 cut(s)	279, 1064
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	1066
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	6 cut(s)	423, 595, 603, 631, 984, 1000
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 281
BstNI	CCWGG	2 cut(s)	804, 1137
BstSCI	CCNGG	3 cut(s)	802, 933, 1135
BstSFI	CTRYAG	2 cut(s)	16, 292
BstUI	CGCG	1 cut(s)	1066
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	3 cut(s)	35, 290, 815
BstZ17I	GTATAC	1 cut(s)	1026
BsuI	GTATCC	2 cut(s)	5, 695
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	2 cut(s)	279, 1064
BtgZI	GCGATG	2 cut(s)	60, 711
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	444, 898
CaiI	CAGNNNCTG	2 cut(s)	857, 876
CfoI	GCGC	1 cut(s)	668
Cfr13I	GGNCC	1 cut(s)	1055
Cfr42I	CCGCGG	1 cut(s)	1067
Csp6I	GTAC	4 cut(s)	107, 754, 796, 919
CviAII	CATG	4 cut(s)	185, 266, 280, 302
CviQI	GTAC	4 cut(s)	107, 754, 796, 919
DdeI	CTNAG	5 cut(s)	24, 501, 512, 686, 1113
DpnI	GATC	6 cut(s)	422, 594, 602, 630, 983, 999
DpnII	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
Eam1104I	CTCTTC	1 cut(s)	1014
EarI	CTCTTC	1 cut(s)	1014
Eco130I	CCWWGG	2 cut(s)	81, 279
Eco147I	AGGCCT	1 cut(s)	86
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	1055
Eco47III	AGCGCT	1 cut(s)	667
Eco57I	CTGAAG	2 cut(s)	707, 1038
Eco88I	CYCGRG	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	802, 1135
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	2 cut(s)	81, 279
ErhI	CCWWGG	2 cut(s)	81, 279
FaeI	CATG	4 cut(s)	188, 269, 283, 305
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	4 cut(s)	184, 265, 279, 301
FauI	CCCGC	1 cut(s)	1071
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	1025
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	3 cut(s)	93, 663, 1052
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	796
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	382, 934
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	4 cut(s)	188, 269, 283, 305
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	570
HpaII	CCGG	2 cut(s)	382, 934
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	4 cut(s)	59, 107, 763, 1026
Hpy188I	TCNGA	7 cut(s)	7, 192, 327, 605, 646, 941, 1101
Hpy188III	TCNNGA	7 cut(s)	72, 127, 208, 541, 907, 1016, 1045
Hpy8I	GTNNAC	4 cut(s)	59, 107, 763, 1026
HpyAV	CCTTC	2 cut(s)	97, 324
HpyCH4III	ACNGT	3 cut(s)	317, 414, 923
HpyCH4IV	ACGT	1 cut(s)	1028
HpyCH4V	TGCA	6 cut(s)	184, 294, 530, 587, 870, 1146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 281
HpyF3I	CTNAG	5 cut(s)	24, 501, 512, 686, 1113
HpySE526I	ACGT	1 cut(s)	1028
Hsp92II	CATG	4 cut(s)	188, 269, 283, 305
HspAI	GCGC	1 cut(s)	666
Ksp22I	TGATCA	1 cut(s)	600
KspI	CCGCGG	1 cut(s)	1067
Kzo9I	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	93, 663, 1052
MaeII	ACGT	1 cut(s)	1028
MaeIII	GTNAC	3 cut(s)	923, 1118, 1131
MalI	GATC	6 cut(s)	422, 594, 602, 630, 983, 999
MboI	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
MlyI	GAGTC	2 cut(s)	183, 805
MnlI	CCTC	4 cut(s)	107, 286, 501, 573
MslI	CAYNNNNRTG	1 cut(s)	891
MspA1I	CMGCKG	2 cut(s)	598, 1066
MspI	CCGG	2 cut(s)	382, 934
MspR9I	CCNGG	3 cut(s)	804, 935, 1137
MvaI	CCWGG	2 cut(s)	804, 1137
MvnI	CGCG	1 cut(s)	1066
MwoI	GCNNNNNNNGC	2 cut(s)	83, 281
NciI	CCSGG	1 cut(s)	935
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
NlaIII	CATG	4 cut(s)	188, 269, 283, 305
NmeAIII	GCCGAG	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	923
OliI	CACNNNNGTG	1 cut(s)	891
PaeR7I	CTCGAG	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 756
PfeI	GAWTC	9 cut(s)	224, 320, 428, 478, 537, 658, 712, 854, 942
PflFI	GACNNNGTC	1 cut(s)	935
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	182, 805
PpsI	GAGTC	2 cut(s)	182, 805
Psp6I	CCWGG	2 cut(s)	802, 1135
PspGI	CCWGG	2 cut(s)	802, 1135
PspPI	GGNCC	1 cut(s)	1055
PstI	CTGCAG	1 cut(s)	296
PstNI	CAGNNNCTG	2 cut(s)	857, 876
PsyI	GACNNNGTC	1 cut(s)	935
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	4 cut(s)	108, 755, 797, 920
RsaNI	GTAC	4 cut(s)	107, 754, 796, 919
RseI	CAYNNNNRTG	1 cut(s)	891
SacII	CCGCGG	1 cut(s)	1067
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	6 cut(s)	420, 592, 600, 628, 981, 997
Sau96I	GGNCC	1 cut(s)	1055
ScaI	AGTACT	1 cut(s)	755
SchI	GAGTC	2 cut(s)	183, 805
ScrFI	CCNGG	3 cut(s)	804, 935, 1137
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	2 cut(s)	16, 292
Sfr274I	CTCGAG	1 cut(s)	72
Sfr303I	CCGCGG	1 cut(s)	1067
SgrBI	CCGCGG	1 cut(s)	1067
SinI	GGWCC	1 cut(s)	1055
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	2 cut(s)	72, 208
SmoI	CTYRAG	2 cut(s)	72, 208
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	4 cut(s)	215, 1064, 1066, 1077
SspMI	CTAG	3 cut(s)	93, 663, 1052
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	3 cut(s)	802, 933, 1135
StyI	CCWWGG	2 cut(s)	81, 279
TaaI	ACNGT	3 cut(s)	317, 414, 923
TaiI	ACGT	1 cut(s)	1031
TaqI	TCGA	6 cut(s)	73, 481, 492, 750, 814, 1005
TatI	WGTACW	3 cut(s)	106, 753, 795
TfiI	GAWTC	9 cut(s)	224, 320, 428, 478, 537, 658, 712, 854, 942
TscAI	CASTG	2 cut(s)	451, 898
TseFI	GTSAC	1 cut(s)	923
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	7 cut(s)	154, 290, 375, 707, 779, 926, 1073
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	2 cut(s)	451, 898
Tth111I	GACNNNGTC	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	1055
XagI	CCTNNNNNAGG	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	1025
XspI	CTAG	3 cut(s)	93, 663, 1052
ZrmI	AGTACT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.