Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008999

Physical Location & Seq

Genomic Coordinates Forward (+)

1169513 .. 1171506

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCTGATGTGTATTACAGTTCGAAGAAGACTGACGATGTTTGCGACGACGTTTGTGGCCAGGGATCAGAAGCAGCGTTGAGCATGTCTAGACTGCGATGCATTTTGCGGGGCTTGGATTTGAAGACTTACATTTTCCTGTTTGCGGTTGTTCCATTAGGCGTATTTGCGATATTTTTACATGGGCAGAAGATCTCGTATTTCCTAAGACCTCTTTGGGAAAAACCTCCGAAGCCCTTCATTGATATCCCACACTACTATAATCAGAATGTGTCAATGGAGACTCTTTGCAGGCTTCACGGATGGAAGATTCGTGAATCACCTAGACGAGTGTATGATGCAGTTCTTTTCAGCAATGAAGTAGACATGCTTACAATCCGATGGAATGAATTGTATCCTTTCGTGACACAGTTTGTTCTCCTCGAATCAAACTCAACATTTACTGGCTTGCCAAAGCCATTGCTTTTTGGAAGAAACCGGGACAAGTTCAAGTTTGTTGAAAACCGGCTTACATATGTTACAACAGGAGGAAGATTTCAGAAAGGTGAAAACCCATTCTATGAGGAGGCGTATCAGAGAGTGGCACTCGACCAGCTTCTTAGAGTTGCTGGTATAGAAGATGATGACCTGCTGATCATGTCCGATGTTGATGAGATTCCTAGCGCCCACACAATTGATCTCTTGAGGTGGTGTGATGACACCCCGCCTGTTGTTCATCTTGGGCTGAGGAATTACTTGTACTCTTTTGAGTATTACGTAGATGACAAGAGCTGGAGAGCATCCGTTCACAGGTATCAGACTGGTAATACTACCTATGCACACTTCAGACAGAGCGACTACCTTTTGCCAGATTCAGGTTGGCATTGCAGCTTTTGTTTCCGCCATATCAACGAGTTCATATTCAAGATGAAAGCTTACAGCCACAATGATCGGGTGAGGTTCTCTCATTATCTGAACCCTAAAAGGATCCAGGATGTAATATGTAAAGGGGCTGATCTATTTGACATGCTTCCTGAGGAGTACACATTCAAGGAGATTATCGGAAAAATGGGACCTATTCCTAGATCTCATTCAGCCGTTCATCTCCCTGCATATTTGTTGAACAATGCTGAGAAGTACAAATACCTATTGCCCGGAAACTGCAAGAGGGAAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

387

Amino Acids

45.19

Weight (kDa)

7.19

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01620 AT3G27540 AT5G14480
fragaria_vesca	FvH4_6g51700
malus_domestica	MD09G1023400.v1.1 MD17G1022900.v1.1
prunus_persica	Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1
pyrus_communis	pycom111g01950 pycom17g01960
rosa_chinensis	RchiOBHm_Chr2g0173231
rosa_laevigata	RLG00000022172
rosa_multiflora	Rmu_sc0000860.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079100
rosa_rugosa	Rorug02G0566700
rosa_samantha	Rh2AG646600 Rh2BG657300 Rh2CG622500 Rh2DG670900
rosa_wichuraiana	Rw2G053110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	4 cut(s)	109, 146, 704, 880
AclWI	GGATC	3 cut(s)	73, 961, 974
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	808
AfaI	GTAC	3 cut(s)	740, 1022, 1118
AfiI	CCNNNNNNNGG	3 cut(s)	145, 789, 854
AgsI	TTSAA	6 cut(s)	124, 490, 500, 904, 1030, 1102
AjnI	CCWGG	2 cut(s)	60, 969
AluBI	AGCT	4 cut(s)	595, 771, 870, 914
AluI	AGCT	4 cut(s)	595, 771, 870, 914
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	3 cut(s)	73, 961, 974
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	2 cut(s)	74, 867
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	1052
AsuC2I	CCSGG	2 cut(s)	479, 1134
AsuHPI	GGTGA	3 cut(s)	312, 557, 946
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	1052
AxyI	CCTNAGG	1 cut(s)	1014
BalI	TGGCCA	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	966
BarI	GAAGNNNNNNTAC	2 cut(s)	1106, 1138
BbsI	GAAGAC	2 cut(s)	35, 131
BbvCI	CCTCAGC	1 cut(s)	725
BbvI	GCAGC	2 cut(s)	86, 879
BccI	CCATC	2 cut(s)	297, 375
BceAI	ACGGC	1 cut(s)	1061
BciT130I	CCWGG	2 cut(s)	62, 971
BciVI	GTATCC	1 cut(s)	405
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	2 cut(s)	479, 1134
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	4 cut(s)	90, 324, 660, 1062
BfoI	RGCGCY	1 cut(s)	666
BfuAI	ACCTGC	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	405
BglII	AGATCT	2 cut(s)	192, 1064
BisI	GCNGC	2 cut(s)	75, 868
BlsI	GCNGC	2 cut(s)	76, 869
Bme1390I	CCNGG	4 cut(s)	62, 479, 971, 1134
Bme18I	GGWCC	1 cut(s)	1052
BmgT120I	GGNCC	1 cut(s)	1052
BmiI	GGNNCC	2 cut(s)	968, 1053
BmrFI	CCNGG	4 cut(s)	62, 479, 971, 1134
BmsI	GCATC	3 cut(s)	89, 328, 788
BpiI	GAAGAC	2 cut(s)	35, 131
BplI	GAGNNNNNCTC	4 cut(s)	570, 602, 928, 960
BpmI	CTGGAG	1 cut(s)	793
Bpu10I	CCTNAGC	1 cut(s)	725
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	703
BpuMI	CCSGG	2 cut(s)	479, 1134
BsaAI	YACGTR	1 cut(s)	757
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 789, 854
Bse118I	RCCGGY	1 cut(s)	504
Bse1I	ACTGG	2 cut(s)	448, 805
Bse21I	CCTNAGG	1 cut(s)	1014
Bse3DI	GCAATG	3 cut(s)	361, 458, 862
BseBI	CCWGG	2 cut(s)	62, 971
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	3 cut(s)	308, 779, 979
BseLI	CCNNNNNNNGG	3 cut(s)	145, 789, 854
BseMI	GCAATG	3 cut(s)	361, 458, 862
BseMII	CTCAG	3 cut(s)	716, 1005, 1101
BseNI	ACTGG	2 cut(s)	448, 805
BseRI	GAGGAG	3 cut(s)	410, 578, 1031
BseXI	GCAGC	2 cut(s)	86, 879
BshFI	GGCC	1 cut(s)	60
BsiSI	CCGG	3 cut(s)	478, 505, 1134
BslFI	GGGAC	2 cut(s)	494, 1065
BslI	CCNNNNNNNGG	3 cut(s)	145, 789, 854
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	494, 1065
BsnI	GGCC	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	23
Bsp143I	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
BspACI	CCGC	4 cut(s)	109, 146, 704, 880
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	3 cut(s)	717, 1006, 1102
BspLI	GGNNCC	2 cut(s)	968, 1053
BspMI	ACCTGC	1 cut(s)	636
BspPI	GGATC	3 cut(s)	73, 961, 974
BspT104I	TTCGAA	1 cut(s)	23
BsrDI	GCAATG	3 cut(s)	361, 458, 862
BsrFI	RCCGGY	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	448, 805
BssAI	RCCGGY	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
Bst2UI	CCWGG	2 cut(s)	62, 971
Bst4CI	ACNGT	2 cut(s)	20, 411
BstBAI	YACGTR	1 cut(s)	757
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	293, 449
BstDEI	CTNAG	5 cut(s)	206, 599, 725, 1014, 1110
BstF5I	GGATG	3 cut(s)	308, 779, 979
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
BstNI	CCWGG	2 cut(s)	62, 971
BstNSI	RCATGY	3 cut(s)	88, 370, 1009
BstSCI	CCNGG	4 cut(s)	60, 477, 969, 1132
BstSNI	TACGTA	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	86, 879
BstV2I	GAAGAC	2 cut(s)	35, 131
BstX2I	RGATCY	3 cut(s)	192, 966, 1064
BstYI	RGATCY	3 cut(s)	192, 966, 1064
Bsu36I	CCTNAGG	1 cut(s)	1014
BsuI	GTATCC	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	308, 779, 979
BveI	ACCTGC	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	293, 449
CfoI	GCGC	1 cut(s)	665
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	1052
Csp6I	GTAC	3 cut(s)	739, 1021, 1117
CviAII	CATG	5 cut(s)	85, 182, 367, 637, 1006
CviQI	GTAC	3 cut(s)	739, 1021, 1117
DdeI	CTNAG	5 cut(s)	206, 599, 725, 1014, 1110
DpnI	GATC	8 cut(s)	67, 194, 635, 678, 930, 968, 996, 1066
DpnII	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	869
Eco105I	TACGTA	1 cut(s)	757
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	1052
Eco57I	CTGAAG	1 cut(s)	808
Eco81I	CCTNAGG	1 cut(s)	1014
EcoO109I	RGGNCCY	1 cut(s)	1052
EcoRII	CCWGG	2 cut(s)	60, 969
EcoRV	GATATC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	104
FaeI	CATG	5 cut(s)	88, 185, 370, 640, 1009
FaqI	GGGAC	2 cut(s)	494, 1065
FatI	CATG	5 cut(s)	84, 181, 366, 636, 1005
FauI	CCCGC	2 cut(s)	102, 711
FauNDI	CATATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	75, 868
FokI	GGATG	3 cut(s)	315, 766, 986
Fsp4HI	GCNGC	2 cut(s)	75, 868
FspBI	CTAG	4 cut(s)	90, 324, 660, 1062
GlaI	GCGC	1 cut(s)	664
GluI	GCNGC	2 cut(s)	75, 868
GsuI	CTGGAG	1 cut(s)	793
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	3 cut(s)	478, 505, 1134
HhaI	GCGC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	88, 185, 370, 640, 1009
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HindIII	AAGCTT	1 cut(s)	912
HinfI	GANTC	6 cut(s)	283, 310, 317, 425, 655, 851
HpaII	CCGG	3 cut(s)	478, 505, 1134
HphI	GGTGA	3 cut(s)	312, 557, 946
Hpy166II	GTNNAC	3 cut(s)	364, 787, 1023
Hpy188III	TCNNGA	6 cut(s)	90, 314, 403, 682, 904, 1013
Hpy8I	GTNNAC	3 cut(s)	364, 787, 1023
Hpy99I	CGWCG	2 cut(s)	50, 53
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	2 cut(s)	20, 411
HpyCH4IV	ACGT	2 cut(s)	51, 756
HpyCH4V	TGCA	7 cut(s)	102, 291, 341, 818, 867, 1091, 1143
HpyF3I	CTNAG	5 cut(s)	206, 599, 725, 1014, 1110
HpySE526I	ACGT	2 cut(s)	51, 756
Hsp92II	CATG	5 cut(s)	88, 185, 370, 640, 1009
HspAI	GCGC	1 cut(s)	663
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
Lsp1109I	GCAGC	2 cut(s)	86, 879
LweI	GCATC	3 cut(s)	89, 328, 788
MaeI	CTAG	4 cut(s)	90, 324, 660, 1062
MaeII	ACGT	2 cut(s)	51, 756
MaeIII	GTNAC	2 cut(s)	403, 517
MalI	GATC	8 cut(s)	67, 194, 635, 678, 930, 968, 996, 1066
MboI	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
MboII	GAAGA	8 cut(s)	37, 40, 136, 202, 319, 483, 543, 629
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	3 cut(s)	192, 966, 1064
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	3 cut(s)	389, 672, 730
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	277
Mox20I	TGGCCA	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	3 cut(s)	478, 505, 1134
MspR9I	CCNGG	4 cut(s)	62, 479, 971, 1134
MunI	CAATTG	1 cut(s)	672
MvaI	CCWGG	2 cut(s)	62, 971
NciI	CCSGG	2 cut(s)	479, 1134
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
NlaIII	CATG	5 cut(s)	88, 185, 370, 640, 1009
NlaIV	GGNNCC	2 cut(s)	968, 1053
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	3 cut(s)	88, 370, 1009
NspV	TTCGAA	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	5 cut(s)	310, 317, 425, 655, 851
PfoI	TCCNGGA	1 cut(s)	969
PkrI	GCNGC	2 cut(s)	76, 869
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	757
PpuMI	RGGWCCY	1 cut(s)	1052
Psp5II	RGGWCCY	1 cut(s)	1052
Psp6I	CCWGG	2 cut(s)	60, 969
PspGI	CCWGG	2 cut(s)	60, 969
PspN4I	GGNNCC	2 cut(s)	968, 1053
PspPI	GGNCC	1 cut(s)	1052
PspPPI	RGGWCCY	1 cut(s)	1052
PsuI	RGATCY	3 cut(s)	192, 966, 1064
RsaI	GTAC	3 cut(s)	740, 1022, 1118
RsaNI	GTAC	3 cut(s)	739, 1021, 1117
SatI	GCNGC	2 cut(s)	75, 868
Sau3AI	GATC	8 cut(s)	65, 192, 633, 676, 928, 966, 994, 1064
Sau96I	GGNCC	1 cut(s)	1052
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	4 cut(s)	62, 479, 971, 1134
SfaNI	GCATC	3 cut(s)	89, 328, 788
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	1052
SmlI	CTYRAG	1 cut(s)	682
SmoI	CTYRAG	1 cut(s)	682
SnaBI	TACGTA	1 cut(s)	757
Sse9I	AATT	3 cut(s)	389, 672, 730
SsiI	CCGC	4 cut(s)	109, 146, 704, 880
SspMI	CTAG	4 cut(s)	90, 324, 660, 1062
StyD4I	CCNGG	4 cut(s)	60, 477, 969, 1132
TaaI	ACNGT	2 cut(s)	20, 411
TaiI	ACGT	2 cut(s)	54, 759
TaqI	TCGA	3 cut(s)	23, 423, 588
TasI	AATT	3 cut(s)	389, 672, 730
TatI	WGTACW	3 cut(s)	738, 1020, 1116
TfiI	GAWTC	5 cut(s)	310, 317, 425, 655, 851
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	74, 867
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	7 cut(s)	229, 372, 402, 704, 886, 923, 1070
TspGWI	ACGGA	2 cut(s)	315, 772
VpaK11BI	GGWCC	1 cut(s)	1052
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	3 cut(s)	88, 370, 1009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	855
XmiI	GTMKAC	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	4 cut(s)	90, 324, 660, 1062
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.