AT3G27540

Glycosyltransferase family 17

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008999
Physical Location & Seq
Forward (+)
10205074 .. 10207423
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27540.1

Sequence Viewer

Length: 1173 bp
ATGTCCGATGGATACATCAATTCGAAGAAGACTGATGATATTTGCGAAGATGTTTGTGGACAGGGATCAAAAGCAGCAAAAACAATCTCAAGGCTAAAATGTGTGCTTAAAGGTTTTGATTTAAGAACATACTTGTTCCTCTTTGTGTTGATGCCATTTGGTATCTTAGCAATTTATCTACACGGCCAAAAGTTCACTTATTTCTTTAGACCTCTTTGGGAATCACCTCCGAAGCCATTTCAAACCATTCCTCATTACTATAATGAGAATGTTACTATGGAATCTCTCTGTAGTCTTCATGGTTGGGGAATTAGAGACTCGCCCAGACGGGTTTTCGACGCGGTTTTGTTTAGTAATGAGAAAGATCTTTTAACTGTTAGATGGAATGAGCTTTATCCTTACGTGACACAGTTTGTGATTCTTGAATCTAATTCTACGTTTACTGGTTTGCCTAAACCATTGGTGTTTAAGAGTAATAAGGATCAGTTTAAGTTTGTGGAGCCGCGGCTAACTTATGGGACGATTGGTGGACGGTTTAGGAAAGGCGAGAATCCGTTTGTCGAAGAAGCGTATCAGCGAGTTGCGTTGGATCAGTTGCTTAGGATTGCTGGTATTCAAGAAGATGATTTGTTGATAATGTCTGATGTTGATGAGATTCCTAGTGCTCATACTATCAATCTTTTGAGATGGTGTGATGATATTCCTCCAGTTCTTCACCTTCAGTTGAAGAATTATTTGTATTCTTTCGAATACTATGTCGATAGCAAGAGCTGGAGAGCGTCTATACACCGTTACAGTCCAGGGAAAACGCGGTATGCTCATTTCCGTCAGAGTAATGTTATGTTAGCTGATTCTGGATGGCATTGTAGCTTCTGTTTCCGTTATATAAGTGAGTTTATATTCAAGATGAAAGCTTATAGTCATTCAGACCGTGTCAGATTCTCTCATTACCTGAATCCAAGGAGGATTCAAGATGTTATTTGCAAAGGAACTGATTTGTTTGATATGTTACCTGAAGAATACACATTCAAGGAGATTATAGGCAAAATGGGACCTGTACCTCGGTCTTATTCAGCGGTTCATCTTCCTTCGTACCTACTGTATAACGCCGAGCAGTACAAATACTTGTTGCCTGGTAATTGCATAAGAGAAAAACAGACAGGGTTTATATGA

Protein Analysis

390

Amino Acids

45.66

Weight (kDa)

8.67

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_17 PF04724 39 - 384 4.2e-186 Glycosyltransferase family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 341, 505, 811
AciI CCGC 5 cut(s) 341, 503, 505, 811, 1076
AclWI GGATC 3 cut(s) 73, 489, 597
AcoI YGGCCR 1 cut(s) 184
AcuI CTGAAG 2 cut(s) 704, 1035
AfaI GTAC 3 cut(s) 1059, 1094, 1118
AgsI TTSAA 7 cut(s) 242, 425, 617, 727, 904, 971, 1030
AjnI CCWGG 2 cut(s) 799, 1132
AluBI AGCT 5 cut(s) 391, 771, 848, 870, 914
AluI AGCT 5 cut(s) 391, 771, 848, 870, 914
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 3 cut(s) 73, 489, 597
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 741, 773
AspS9I GGNCC 1 cut(s) 1052
AsuHPI GGTGA 2 cut(s) 216, 707
AsuII TTCGAA 2 cut(s) 23, 747
AvaII GGWCC 1 cut(s) 1052
BbsI GAAGAC 2 cut(s) 35, 287
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 86
BccI CCATC 4 cut(s) 2, 375, 681, 852
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 2 cut(s) 801, 1134
BciVI GTATCC 1 cut(s) 5
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 660
BfmI CTRYAG 1 cut(s) 289
BfuI GTATCC 1 cut(s) 5
BglII AGATCT 1 cut(s) 364
BisI GCNGC 3 cut(s) 75, 503, 506
BlsI GCNGC 3 cut(s) 76, 504, 507
Bme1390I CCNGG 2 cut(s) 801, 1134
Bme18I GGWCC 1 cut(s) 1052
BmgT120I GGNCC 1 cut(s) 1052
BmiI GGNNCC 2 cut(s) 501, 1053
BmrFI CCNGG 2 cut(s) 801, 1134
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 35, 287
BpmI CTGGAG 2 cut(s) 690, 793
Bpu10I CCTNAGC 1 cut(s) 599
Bpu14I TTCGAA 2 cut(s) 23, 747
BpuEI CTTGAG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 403
BsaJI CCNNGG 4 cut(s) 503, 800, 959, 1061
Bse1I ACTGG 2 cut(s) 448, 707
BseBI CCWGG 2 cut(s) 801, 1134
BseDI CCNNGG 4 cut(s) 503, 800, 959, 1061
BseGI GGATG 1 cut(s) 863
BseNI ACTGG 2 cut(s) 448, 707
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 3 cut(s) 341, 505, 811
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 667
BslFI GGGAC 2 cut(s) 532, 1065
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 532, 1065
BsnI GGCC 1 cut(s) 186
Bsp119I TTCGAA 2 cut(s) 23, 747
Bsp1286I GDGCHC 1 cut(s) 667
Bsp143I GATC 4 cut(s) 65, 364, 481, 589
BspACI CCGC 5 cut(s) 341, 503, 505, 811, 1076
BspANI GGCC 1 cut(s) 186
BspFNI CGCG 3 cut(s) 341, 505, 811
BspLI GGNNCC 2 cut(s) 501, 1053
BspPI GGATC 3 cut(s) 73, 489, 597
BspT104I TTCGAA 2 cut(s) 23, 747
BsrI ACTGG 2 cut(s) 448, 707
BssECI CCNNGG 4 cut(s) 503, 800, 959, 1061
BssMI GATC 4 cut(s) 65, 364, 481, 589
BssT1I CCWWGG 1 cut(s) 959
Bst2UI CCWGG 2 cut(s) 801, 1134
Bst4CI ACNGT 7 cut(s) 376, 411, 534, 791, 797, 932, 1101
BstBAI YACGTR 1 cut(s) 403
BstBI TTCGAA 2 cut(s) 23, 747
BstDEI CTNAG 2 cut(s) 166, 599
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 1 cut(s) 863
BstFNI CGCG 3 cut(s) 341, 505, 811
BstKTI GATC 4 cut(s) 68, 367, 484, 592
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 4 cut(s) 65, 364, 481, 589
BstNI CCWGG 2 cut(s) 801, 1134
BstSCI CCNGG 2 cut(s) 799, 1132
BstSFI CTRYAG 1 cut(s) 289
BstUI CGCG 3 cut(s) 341, 505, 811
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 2 cut(s) 35, 287
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuI GTATCC 1 cut(s) 5
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 1 cut(s) 863
Cfr13I GGNCC 1 cut(s) 1052
Cfr42I CCGCGG 1 cut(s) 506
CseI GACGC 2 cut(s) 347, 768
Csp6I GTAC 3 cut(s) 1058, 1093, 1117
CviAII CATG 1 cut(s) 299
CviQI GTAC 3 cut(s) 1058, 1093, 1117
DdeI CTNAG 2 cut(s) 166, 599
DpnI GATC 4 cut(s) 67, 366, 483, 591
DpnII GATC 4 cut(s) 65, 364, 481, 589
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 959
Eco47I GGWCC 1 cut(s) 1052
Eco57I CTGAAG 2 cut(s) 704, 1035
EcoO109I RGGNCCY 1 cut(s) 1052
EcoRII CCWGG 2 cut(s) 799, 1132
EcoT14I CCWWGG 1 cut(s) 959
ErhI CCWWGG 1 cut(s) 959
FaeI CATG 1 cut(s) 302
FaqI GGGAC 2 cut(s) 532, 1065
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 75, 503, 506
FokI GGATG 1 cut(s) 870
Fsp4HI GCNGC 3 cut(s) 75, 503, 506
FspBI CTAG 1 cut(s) 660
GluI GCNGC 3 cut(s) 75, 503, 506
GsuI CTGGAG 2 cut(s) 690, 793
HaeIII GGCC 1 cut(s) 186
HgaI GACGC 2 cut(s) 347, 768
Hin1II CATG 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 912
HphI GGTGA 2 cut(s) 216, 707
Hpy166II GTNNAC 4 cut(s) 59, 195, 441, 530
Hpy188I TCNGA 6 cut(s) 7, 231, 643, 831, 928, 938
Hpy188III TCNNGA 5 cut(s) 422, 617, 855, 904, 971
Hpy8I GTNNAC 4 cut(s) 59, 195, 441, 530
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 728, 1098
HpyCH4III ACNGT 7 cut(s) 376, 411, 534, 791, 797, 932, 1101
HpyCH4IV ACGT 2 cut(s) 402, 437
HpyCH4V TGCA 2 cut(s) 984, 1143
HpyF3I CTNAG 2 cut(s) 166, 599
HpySE526I ACGT 2 cut(s) 402, 437
Hsp92II CATG 1 cut(s) 302
KspI CCGCGG 1 cut(s) 506
Kzo9I GATC 4 cut(s) 65, 364, 481, 589
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 660
MaeII ACGT 2 cut(s) 402, 437
MaeIII GTNAC 4 cut(s) 271, 403, 791, 1008
MalI GATC 4 cut(s) 67, 366, 483, 591
MboI GATC 4 cut(s) 65, 364, 481, 589
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 667
MluCI AATT 6 cut(s) 19, 171, 309, 430, 730, 1138
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 7 cut(s) 149, 222, 237, 261, 714, 957, 1071
MseI TTAA 5 cut(s) 108, 122, 371, 468, 489
MspA1I CMGCKG 2 cut(s) 505, 1076
MspR9I CCNGG 2 cut(s) 801, 1134
MvaI CCWGG 2 cut(s) 801, 1134
MvnI CGCG 3 cut(s) 341, 505, 811
NdeII GATC 4 cut(s) 65, 364, 481, 589
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 2 cut(s) 501, 1053
NmeAIII GCCGAG 1 cut(s) 1135
NmuCI GTSAC 1 cut(s) 403
NspV TTCGAA 2 cut(s) 23, 747
PflFI GACNNNGTC 1 cut(s) 932
PkrI GCNGC 3 cut(s) 76, 504, 507
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Ppu21I YACGTR 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 1052
Psp5II RGGWCCY 1 cut(s) 1052
Psp6I CCWGG 2 cut(s) 799, 1132
PspGI CCWGG 2 cut(s) 799, 1132
PspN4I GGNNCC 2 cut(s) 501, 1053
PspPI GGNCC 1 cut(s) 1052
PspPPI RGGWCCY 1 cut(s) 1052
PsuI RGATCY 1 cut(s) 364
PsyI GACNNNGTC 1 cut(s) 932
RsaI GTAC 3 cut(s) 1059, 1094, 1118
RsaNI GTAC 3 cut(s) 1058, 1093, 1117
SacII CCGCGG 1 cut(s) 506
SaqAI TTAA 5 cut(s) 108, 122, 371, 468, 489
SatI GCNGC 3 cut(s) 75, 503, 506
Sau3AI GATC 4 cut(s) 65, 364, 481, 589
Sau96I GGNCC 1 cut(s) 1052
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 801, 1134
SduI GDGCHC 1 cut(s) 667
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 289
Sfr303I CCGCGG 1 cut(s) 506
SfuI TTCGAA 2 cut(s) 23, 747
SgrBI CCGCGG 1 cut(s) 506
SinI GGWCC 1 cut(s) 1052
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 6 cut(s) 19, 171, 309, 430, 730, 1138
SsiI CCGC 5 cut(s) 341, 503, 505, 811, 1076
SspMI CTAG 1 cut(s) 660
StyD4I CCNGG 2 cut(s) 799, 1132
StyI CCWWGG 1 cut(s) 959
TaaI ACNGT 7 cut(s) 376, 411, 534, 791, 797, 932, 1101
TaiI ACGT 2 cut(s) 405, 440
TaqI TCGA 5 cut(s) 23, 336, 561, 747, 759
TaqII GACCGA 1 cut(s) 1053
TasI AATT 6 cut(s) 19, 171, 309, 430, 730, 1138
TatI WGTACW 1 cut(s) 1116
TauI GCSGC 2 cut(s) 505, 508
Tru1I TTAA 5 cut(s) 108, 122, 371, 468, 489
Tru9I TTAA 5 cut(s) 108, 122, 371, 468, 489
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 3 cut(s) 287, 923, 1070
TspGWI ACGGA 3 cut(s) 543, 815, 869
Tth111I GACNNNGTC 1 cut(s) 932
VpaK11BI GGWCC 1 cut(s) 1052
XspI CTAG 1 cut(s) 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.