Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008999

Physical Location & Seq

Genomic Coordinates Forward (+)

1682761 .. 1685186

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1022900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTGATGGGTATTACAGTTCGAAGAAGACTGACGATGTCTGCGACGACGTTTGTGGCCAGCAGGGATCACAAGCAGCGTTGAGCATGTCTAGACTGCGATGCATTTTGCGGGGCTTGGATTTGAAGATTTACATTTTCCTGTTTGCGGTTGTTCCATTAGGCGTATTTGGGATATATTTACATGGGCAGAAGATCTCGTATTTCCTAAGACCTCTTTGGGAAAAACCTCCGAAGCCCTTCATTGATATTCCACACTACTATAATCAGAATGTGTCAATGGAAACTCTTTGCAGGCTTCACGGATGGAAGATTCGTGAATCACCTAGACGAGTCTATGATGCAGTTCTTTTCAGCAATGAAGTAGACATGCTTACAATCCGATGGAATGAATTGTATCCTTTCGTGACACAGTTTGTCCTCCTCGAATCAAACTCAACGTTTACTGGCTTGCCAAAGCCATTGATTTTTGGAAAAAATCGGGCCAAGTTTAAGTTTGTTGAAAGCCGGCTTACTTATGTTACAACAGGAGGAAGATTTCAGAAAGGTGAAAACCCATTTTATGAGGAGGCGTATCAAAGAGTGGCACTTGACCAGATTCTTAGAGTTGCCGGTATAGAAGATGATGACCTGCTGATCATGTCCGATGTTGATGAGATTCCTAGTGCCCACACAATTGATCTCTTGAGGTGGTGTGATGACACCCCGCCTGTTGTTCATCTTGGGCTGAGGAATTACTTGTACTCTTTTGAATATTATGTAGATGACAAGAGCTGGAGAGCATCCGTTCACAGGTACCAGACTGGTAATACTACCTATGCACATTTCAGACAGAGCGACTACCTTTTGCCAGATGCAGGTTGGCATTGCAGCTTTTGTTTCCGCCGTATCAGTGAGTTCATATTCAAGATGAAAGCTTACAGCCACAATGATCGGGTGAGGTTCTCTCATTATCTGAACCCTCAAAGGATCCAAGATGTAATATGTAAAGGGGCTGATCTATTCGACATGCTTCCCGAGGAGTACACATTTAAGGAGATTATTGGAAAGATGGGACCTATTCCTAGATCTCATTCAGCAGTTCATCTCCCTGCATATTTGTTGAAGAATGCTGAGAAGTACAAATACTTATTGCCCGGAAACTGCAAGAGGGAAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

388

Amino Acids

45.18

Weight (kDa)

8.24

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_17	PF04724	40 - 385	2.3e-184	Glycosyltransferase family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01620 AT3G27540 AT5G14480
fragaria_vesca	FvH4_6g51700
malus_domestica	MD09G1023400.v1.1 MD17G1022900.v1.1
prunus_persica	Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1
pyrus_communis	pycom111g01950 pycom17g01960
rosa_chinensis	RchiOBHm_Chr2g0173231
rosa_laevigata	RLG00000022172
rosa_multiflora	Rmu_sc0000860.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079100
rosa_rugosa	Rorug02G0566700
rosa_samantha	Rh2AG646600 Rh2BG657300 Rh2CG622500 Rh2DG670900
rosa_wichuraiana	Rw2G053110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	639, 848
Acc65I	GGTACC	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	4 cut(s)	112, 149, 707, 883
AclI	AACGTT	1 cut(s)	440
AclWI	GGATC	3 cut(s)	76, 964, 977
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	4 cut(s)	743, 797, 1025, 1121
AfiI	CCNNNNNNNGG	3 cut(s)	148, 792, 857
AgsI	TTSAA	5 cut(s)	127, 503, 752, 907, 1105
AluBI	AGCT	3 cut(s)	774, 873, 917
AluI	AGCT	3 cut(s)	774, 873, 917
AlwI	GGATC	3 cut(s)	76, 964, 977
Ama87I	CYCGRG	1 cut(s)	1016
AoxI	GGCC	2 cut(s)	58, 483
ApeKI	GCWGC	2 cut(s)	77, 870
Asp700I	GAANNNNTTC	1 cut(s)	239
Asp718I	GGTACC	1 cut(s)	795
AspS9I	GGNCC	2 cut(s)	483, 1055
AsuC2I	CCSGG	1 cut(s)	1137
AsuHPI	GGTGA	3 cut(s)	315, 560, 949
AsuII	TTCGAA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	1055
BaeGI	GKGCMC	1 cut(s)	670
BalI	TGGCCA	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	969
BanI	GGYRCC	1 cut(s)	795
BarI	GAAGNNNNNNTAC	2 cut(s)	1109, 1141
BbsI	GAAGAC	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	89, 882
BccI	CCATC	4 cut(s)	2, 300, 378, 1045
BceAI	ACGGC	1 cut(s)	870
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	1137
BfaI	CTAG	4 cut(s)	93, 327, 663, 1065
BfuAI	ACCTGC	2 cut(s)	639, 848
BfuI	GTATCC	1 cut(s)	408
BglII	AGATCT	2 cut(s)	195, 1067
BisI	GCNGC	2 cut(s)	78, 871
BlsI	GCNGC	2 cut(s)	79, 872
Bme1390I	CCNGG	1 cut(s)	1137
Bme18I	GGWCC	1 cut(s)	1055
BmeT110I	CYCGRG	1 cut(s)	1016
BmgT120I	GGNCC	2 cut(s)	483, 1055
BmiI	GGNNCC	3 cut(s)	797, 971, 1056
BmrFI	CCNGG	1 cut(s)	1137
BmsI	GCATC	4 cut(s)	92, 331, 791, 844
BpiI	GAAGAC	1 cut(s)	35
BplI	GAGNNNNNCTC	2 cut(s)	931, 963
BpmI	CTGGAG	1 cut(s)	796
Bpu10I	CCTNAGC	1 cut(s)	728
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	706
BpuMI	CCSGG	1 cut(s)	1137
BsaJI	CCNNGG	1 cut(s)	1017
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 792, 857
Bse118I	RCCGGY	2 cut(s)	507, 611
Bse1I	ACTGG	2 cut(s)	451, 808
Bse3DI	GCAATG	2 cut(s)	364, 865
BseDI	CCNNGG	1 cut(s)	1017
BseGI	GGATG	2 cut(s)	311, 782
BseLI	CCNNNNNNNGG	3 cut(s)	148, 792, 857
BseMI	GCAATG	2 cut(s)	364, 865
BseMII	CTCAG	2 cut(s)	719, 1104
BseNI	ACTGG	2 cut(s)	451, 808
BseRI	GAGGAG	3 cut(s)	413, 581, 1034
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	2 cut(s)	89, 882
BshFI	GGCC	2 cut(s)	60, 485
BshNI	GGYRCC	1 cut(s)	795
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiSI	CCGG	3 cut(s)	508, 612, 1137
BslFI	GGGAC	1 cut(s)	1068
BslI	CCNNNNNNNGG	3 cut(s)	148, 792, 857
BsmFI	GGGAC	1 cut(s)	1068
BsmI	GAATGC	1 cut(s)	1114
BsnI	GGCC	2 cut(s)	60, 485
BsoBI	CYCGRG	1 cut(s)	1016
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
BspACI	CCGC	4 cut(s)	112, 149, 707, 883
BspANI	GGCC	2 cut(s)	60, 485
BspCNI	CTCAG	2 cut(s)	720, 1105
BspLI	GGNNCC	3 cut(s)	797, 971, 1056
BspMI	ACCTGC	2 cut(s)	639, 848
BspPI	GGATC	3 cut(s)	76, 964, 977
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	795
BsrDI	GCAATG	2 cut(s)	364, 865
BsrFI	RCCGGY	2 cut(s)	507, 611
BsrI	ACTGG	2 cut(s)	451, 808
BssAI	RCCGGY	2 cut(s)	507, 611
BssECI	CCNNGG	1 cut(s)	1017
BssMI	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
Bst4CI	ACNGT	2 cut(s)	20, 414
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	62, 296, 452, 509
BstDEI	CTNAG	4 cut(s)	209, 602, 728, 1113
BstF5I	GGATG	2 cut(s)	311, 782
BstKTI	GATC	8 cut(s)	71, 198, 639, 682, 934, 972, 1000, 1070
BstMBI	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
BstNSI	RCATGY	3 cut(s)	91, 373, 1012
BstSCI	CCNGG	1 cut(s)	1135
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	2 cut(s)	89, 882
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	3 cut(s)	195, 969, 1067
BstYI	RGATCY	3 cut(s)	195, 969, 1067
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	60, 485
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	311, 782
BtsIMutI	CAGTG	1 cut(s)	898
BveI	ACCTGC	2 cut(s)	639, 848
Cac8I	GCNNGC	4 cut(s)	62, 296, 452, 509
Cfr10I	RCCGGY	2 cut(s)	507, 611
Cfr13I	GGNCC	2 cut(s)	483, 1055
Csp6I	GTAC	4 cut(s)	742, 796, 1024, 1120
CviAII	CATG	5 cut(s)	88, 185, 370, 640, 1009
CviQI	GTAC	4 cut(s)	742, 796, 1024, 1120
DdeI	CTNAG	4 cut(s)	209, 602, 728, 1113
DpnI	GATC	8 cut(s)	70, 197, 638, 681, 933, 971, 999, 1069
DpnII	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	872
Eco47I	GGWCC	1 cut(s)	1055
Eco88I	CYCGRG	1 cut(s)	1016
EcoO109I	RGGNCCY	1 cut(s)	1055
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	5 cut(s)	91, 188, 373, 643, 1012
FaqI	GGGAC	1 cut(s)	1068
FatI	CATG	5 cut(s)	87, 184, 369, 639, 1008
FauI	CCCGC	2 cut(s)	105, 714
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	78, 871
FokI	GGATG	2 cut(s)	318, 769
Fsp4HI	GCNGC	2 cut(s)	78, 871
FspBI	CTAG	4 cut(s)	93, 327, 663, 1065
GluI	GCNGC	2 cut(s)	78, 871
GsuI	CTGGAG	1 cut(s)	796
HaeIII	GGCC	2 cut(s)	60, 485
HapII	CCGG	3 cut(s)	508, 612, 1137
Hin1II	CATG	5 cut(s)	91, 188, 373, 643, 1012
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	6 cut(s)	313, 320, 333, 428, 598, 658
HpaII	CCGG	3 cut(s)	508, 612, 1137
HphI	GGTGA	3 cut(s)	315, 560, 949
Hpy166II	GTNNAC	4 cut(s)	367, 444, 790, 1026
Hpy188I	TCNGA	7 cut(s)	234, 270, 383, 543, 646, 830, 957
Hpy188III	TCNNGA	6 cut(s)	93, 317, 406, 685, 907, 1016
Hpy8I	GTNNAC	4 cut(s)	367, 444, 790, 1026
Hpy99I	CGWCG	2 cut(s)	50, 53
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	2 cut(s)	20, 414
HpyCH4IV	ACGT	2 cut(s)	51, 440
HpyCH4V	TGCA	8 cut(s)	105, 294, 344, 821, 857, 870, 1094, 1146
HpyF3I	CTNAG	4 cut(s)	209, 602, 728, 1113
HpySE526I	ACGT	2 cut(s)	51, 440
Hsp92II	CATG	5 cut(s)	91, 188, 373, 643, 1012
KpnI	GGTACC	1 cut(s)	799
KroI	GCCGGC	1 cut(s)	507
KroNI	GCCGGC	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
Lsp1109I	GCAGC	2 cut(s)	89, 882
LweI	GCATC	4 cut(s)	92, 331, 791, 844
MaeI	CTAG	4 cut(s)	93, 327, 663, 1065
MaeII	ACGT	2 cut(s)	51, 440
MaeIII	GTNAC	2 cut(s)	406, 520
MalI	GATC	8 cut(s)	70, 197, 638, 681, 933, 971, 999, 1069
MboI	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
MboII	GAAGA	8 cut(s)	37, 40, 139, 205, 322, 546, 632, 1117
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	3 cut(s)	195, 969, 1067
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	3 cut(s)	392, 675, 733
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	1 cut(s)	342
Mox20I	TGGCCA	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	2 cut(s)	492, 1032
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	3 cut(s)	508, 612, 1137
MspR9I	CCNGG	1 cut(s)	1137
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	1114
NaeI	GCCGGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	1137
NdeII	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
NgoMIV	GCCGGC	1 cut(s)	507
NlaIII	CATG	5 cut(s)	91, 188, 373, 643, 1012
NlaIV	GGNNCC	3 cut(s)	797, 971, 1056
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	107
NspI	RCATGY	3 cut(s)	91, 373, 1012
NspV	TTCGAA	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	1114
PdiI	GCCGGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	5 cut(s)	313, 320, 428, 598, 658
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	79, 872
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	1055
Psp1406I	AACGTT	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	1055
PspN4I	GGNNCC	3 cut(s)	797, 971, 1056
PspPI	GGNCC	2 cut(s)	483, 1055
PspPPI	RGGWCCY	1 cut(s)	1055
PsuI	RGATCY	3 cut(s)	195, 969, 1067
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	4 cut(s)	743, 797, 1025, 1121
RsaNI	GTAC	4 cut(s)	742, 796, 1024, 1120
SaqAI	TTAA	2 cut(s)	492, 1032
SatI	GCNGC	2 cut(s)	78, 871
Sau3AI	GATC	8 cut(s)	68, 195, 636, 679, 931, 969, 997, 1067
Sau96I	GGNCC	2 cut(s)	483, 1055
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	1137
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	4 cut(s)	92, 331, 791, 844
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	1055
SmlI	CTYRAG	1 cut(s)	685
SmoI	CTYRAG	1 cut(s)	685
Sse9I	AATT	3 cut(s)	392, 675, 733
SsiI	CCGC	4 cut(s)	112, 149, 707, 883
SspI	AATATT	1 cut(s)	755
SspMI	CTAG	4 cut(s)	93, 327, 663, 1065
StyD4I	CCNGG	1 cut(s)	1135
TaaI	ACNGT	2 cut(s)	20, 414
TaiI	ACGT	2 cut(s)	54, 443
TaqI	TCGA	3 cut(s)	23, 426, 1005
TasI	AATT	3 cut(s)	392, 675, 733
TatI	WGTACW	3 cut(s)	741, 1023, 1119
TfiI	GAWTC	5 cut(s)	313, 320, 428, 598, 658
Tru1I	TTAA	2 cut(s)	492, 1032
Tru9I	TTAA	2 cut(s)	492, 1032
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	77, 870
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	7 cut(s)	232, 375, 405, 707, 889, 926, 1073
TspGWI	ACGGA	2 cut(s)	318, 775
TspRI	CASTG	1 cut(s)	898
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	1055
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	3 cut(s)	91, 373, 1012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	858
XmiI	GTMKAC	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	4 cut(s)	93, 327, 663, 1065
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.