Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008999

Physical Location & Seq

Genomic Coordinates Reverse (-)

26220448 .. 26223880

Gene Structure 3433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G293400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTCTGACGGATACTACAGTTCGAAGAAGACTGATGATATCTGCGACGATGTTTGTGGCCAGCAGGGCTCACAAGCAGCATTGAGCATGTCTAGACTCCGATGCATTTTGCGTGGCTTGGATTTCAAGTCTTACATTTTCCTGTTTACGGTTGTTCCATTGGGCATGTTTGGCATATATTTACATGGGCAGAAGATCTCGTATTTTCTAAGACCACTTTGGGAATCTCCTCCAAAGCCTTTCATTGATATCCCACACTACTATCATCAGAACGTGTCAATGGAGACTCTTTGCAGACTTCATGGGTGGAAGATTCGTGAATCACCGAGACGAGTTTATGATGCAGTTCTTTTCAGTAATGAAGTAGACATGCTTACAATCCGATGGAATGAATTGTATCCATATGTGACACAGTTTGTTCTCCTTGAATCCAACTCAACGTTTACTGGCTTGCCCAAGCCATTGATTTTCGCAAGAAACCGGGACAAGTTTAAGTTTGTTGAACCCCGGCTAACTTATGTTACAACTGGAGGAAGATTTAAGAAAGGGGAAAACCCATTTTATGAGGAGGCATATCAGAGAGTGGCACTTGACCAGCTTCTTCGAGTAGCCGGTATAGAAGATGATGACCTCCTGATAATGTCTGATGTTGATGAGATTCCGAGTGCCCACACAATTGATCTATTGAGGTGGTGTGATGACACCCCGCCCGTTGTTCATCTTGGGCTGAAGAATTACTTGTATTCTTTTGAGTATTATGTAGATGACAAGAGCTGGAGAGCATCAGTTCACAGGTACCAGACTGGTAATACTACCTATGCACACTTTAGACAGAGCGACTACCTTTTGTCCGATGCAGGGTGGCATTGTAGCTTTTGTTTCCGCCATATCAGTGAGTTCATATTCAAGATGAAAGCTTACAGCCACTATGATCGGGTACGGTTCTCTCATTATTTGAACCCGAAAAGGATTCAGGATGTAATATGTAAAGGGGCTGACCTATTTGACATGCTTCCTGAGGAGTACACATTTAAGGAGATCATTGGGAAGATGGGACCTATTCCTAGATCTTACTCAGCTGTTCATCTTCCTGCATTTATACTGAACAATGCTGAGAAGTACAAGTACCTATTGCCTGGAAACTGCAAGAGGGAAAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

Glyco_transf_17

Protein Analysis

388

Amino Acids

45.36

Weight (kDa)

7.59

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01620 AT3G27540 AT5G14480
fragaria_vesca	FvH4_6g51700
malus_domestica	MD09G1023400.v1.1 MD17G1022900.v1.1
prunus_persica	Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1 Prupe.3G293400_v2.0.a1
pyrus_communis	pycom111g01950 pycom17g01960
rosa_chinensis	RchiOBHm_Chr2g0173231
rosa_laevigata	RLG00000022172
rosa_multiflora	Rmu_sc0000860.1_g000004
rosa_roxburghii	Rroxscaffold_2G00079100
rosa_rugosa	Rorug02G0566700
rosa_samantha	Rh2AG646600 Rh2BG657300 Rh2CG622500 Rh2DG670900
rosa_wichuraiana	Rw2G053110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	366
AciI	CCGC	2 cut(s)	707, 883
AclI	AACGTT	1 cut(s)	440
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	5 cut(s)	797, 939, 1025, 1121, 1127
AfiI	CCNNNNNNNGG	2 cut(s)	148, 858
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	5 cut(s)	127, 428, 503, 907, 958
AjnI	CCWGG	1 cut(s)	1135
AluBI	AGCT	5 cut(s)	598, 774, 873, 917, 1079
AluI	AGCT	5 cut(s)	598, 774, 873, 917, 1079
Alw26I	GTCTC	2 cut(s)	278, 322
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	77
Asp718I	GGTACC	1 cut(s)	795
AspS9I	GGNCC	1 cut(s)	1055
AsuC2I	CCSGG	2 cut(s)	482, 508
AsuHPI	GGTGA	1 cut(s)	315
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	1055
AxyI	CCTNAGG	1 cut(s)	1017
BaeGI	GKGCMC	1 cut(s)	670
BaeI	ACNNNNGTAYC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	795
BanII	GRGCYC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	1109, 1141
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	2 cut(s)	378, 1045
BciT130I	CCWGG	1 cut(s)	1137
BciVI	GTATCC	2 cut(s)	5, 408
BcnI	CCSGG	2 cut(s)	482, 508
BcoDI	GTCTC	2 cut(s)	278, 322
BfaI	CTAG	2 cut(s)	93, 1065
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	2 cut(s)	5, 408
BglI	GCCNNNNNGGC	1 cut(s)	66
BglII	AGATCT	2 cut(s)	195, 1067
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	3 cut(s)	482, 508, 1137
Bme18I	GGWCC	1 cut(s)	1055
BmgT120I	GGNCC	1 cut(s)	1055
BmiI	GGNNCC	2 cut(s)	797, 1056
BmrFI	CCNGG	3 cut(s)	482, 508, 1137
BmsI	GCATC	4 cut(s)	92, 331, 791, 844
BpiI	GAAGAC	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	549, 796
Bpu14I	TTCGAA	1 cut(s)	23
BpuMI	CCSGG	2 cut(s)	482, 508
BsaJI	CCNNGG	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 858
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	3 cut(s)	451, 532, 808
Bse21I	CCTNAGG	1 cut(s)	1017
BseBI	CCWGG	1 cut(s)	1137
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	1 cut(s)	982
BseLI	CCNNNNNNNGG	2 cut(s)	148, 858
BseMII	CTCAG	3 cut(s)	1008, 1089, 1104
BseNI	ACTGG	3 cut(s)	451, 532, 808
BseRI	GAGGAG	3 cut(s)	219, 581, 1034
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	795
BsiSI	CCGG	3 cut(s)	481, 508, 612
BslFI	GGGAC	2 cut(s)	497, 1068
BslI	CCNNNNNNNGG	2 cut(s)	148, 858
BsmAI	GTCTC	2 cut(s)	278, 322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	2 cut(s)	497, 1068
BsnI	GGCC	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	71, 670
Bsp143I	GATC	5 cut(s)	195, 679, 931, 1038, 1067
BspACI	CCGC	2 cut(s)	707, 883
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	3 cut(s)	1009, 1088, 1105
BspLI	GGNNCC	2 cut(s)	797, 1056
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	795
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	3 cut(s)	451, 532, 808
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	5 cut(s)	195, 679, 931, 1038, 1067
Bst2UI	CCWGG	1 cut(s)	1137
Bst4CI	ACNGT	4 cut(s)	20, 151, 414, 942
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	62, 452
BstDEI	CTNAG	4 cut(s)	209, 1017, 1075, 1113
BstF5I	GGATG	1 cut(s)	982
BstKTI	GATC	5 cut(s)	198, 682, 934, 1041, 1070
BstMAI	GTCTC	2 cut(s)	278, 322
BstMBI	GATC	5 cut(s)	195, 679, 931, 1038, 1067
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 171
BstNI	CCWGG	1 cut(s)	1137
BstNSI	RCATGY	4 cut(s)	91, 169, 373, 1012
BstSCI	CCNGG	3 cut(s)	480, 506, 1135
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	2 cut(s)	195, 1067
BstYI	RGATCY	2 cut(s)	195, 1067
Bsu36I	CCTNAGG	1 cut(s)	1017
BsuI	GTATCC	2 cut(s)	5, 408
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	982
BtsIMutI	CAGTG	1 cut(s)	898
Cac8I	GCNNGC	2 cut(s)	62, 452
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	1055
Csp6I	GTAC	5 cut(s)	796, 938, 1024, 1120, 1126
CviAII	CATG	6 cut(s)	88, 166, 185, 302, 370, 1009
CviQI	GTAC	5 cut(s)	796, 938, 1024, 1120, 1126
DdeI	CTNAG	4 cut(s)	209, 1017, 1075, 1113
DpnI	GATC	5 cut(s)	197, 681, 933, 1040, 1069
DpnII	GATC	5 cut(s)	195, 679, 931, 1038, 1067
EaeI	YGGCCR	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	872
Eco24I	GRGCYC	1 cut(s)	71
Eco32I	GATATC	2 cut(s)	40, 250
Eco47I	GGWCC	1 cut(s)	1055
Eco57I	CTGAAG	1 cut(s)	749
Eco81I	CCTNAGG	1 cut(s)	1017
EcoO109I	RGGNCCY	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	1135
EcoRV	GATATC	2 cut(s)	40, 250
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	71
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	6 cut(s)	91, 169, 188, 305, 373, 1012
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	2 cut(s)	497, 1068
FatI	CATG	6 cut(s)	87, 165, 184, 301, 369, 1008
FauI	CCCGC	1 cut(s)	714
FauNDI	CATATG	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	989
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	93, 1065
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	549, 796
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	3 cut(s)	481, 508, 612
Hin1II	CATG	6 cut(s)	91, 169, 188, 305, 373, 1012
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	8 cut(s)	96, 224, 286, 313, 320, 428, 658, 970
HpaII	CCGG	3 cut(s)	481, 508, 612
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	5 cut(s)	147, 367, 444, 790, 1026
Hpy188I	TCNGA	8 cut(s)	7, 101, 270, 383, 579, 646, 663, 853
Hpy188III	TCNNGA	6 cut(s)	93, 317, 634, 907, 974, 1016
Hpy8I	GTNNAC	5 cut(s)	147, 367, 444, 790, 1026
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	4 cut(s)	20, 151, 414, 942
HpyCH4IV	ACGT	2 cut(s)	273, 440
HpyCH4V	TGCA	7 cut(s)	105, 294, 344, 821, 857, 1094, 1146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 171
HpyF3I	CTNAG	4 cut(s)	209, 1017, 1075, 1113
HpySE526I	ACGT	2 cut(s)	273, 440
Hsp92II	CATG	6 cut(s)	91, 169, 188, 305, 373, 1012
KpnI	GGTACC	1 cut(s)	799
Kzo9I	GATC	5 cut(s)	195, 679, 931, 1038, 1067
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	4 cut(s)	92, 331, 791, 844
MaeI	CTAG	2 cut(s)	93, 1065
MaeII	ACGT	2 cut(s)	273, 440
MaeIII	GTNAC	2 cut(s)	406, 520
MalI	GATC	5 cut(s)	197, 681, 933, 1040, 1069
MboI	GATC	5 cut(s)	195, 679, 931, 1038, 1067
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	195, 1067
MhlI	GDGCHC	2 cut(s)	71, 670
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	3 cut(s)	392, 675, 733
MluNI	TGGCCA	1 cut(s)	60
MlyI	GAGTC	2 cut(s)	90, 280
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	8 cut(s)	240, 524, 559, 562, 641, 681, 1012, 1143
Mox20I	TGGCCA	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	3 cut(s)	492, 540, 1032
MslI	CAYNNNNRTG	1 cut(s)	891
Msp20I	TGGCCA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	1079
MspI	CCGG	3 cut(s)	481, 508, 612
MspR9I	CCNGG	3 cut(s)	482, 508, 1137
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	1137
MwoI	GCNNNNNNNGC	2 cut(s)	66, 171
NciI	CCSGG	2 cut(s)	482, 508
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	5 cut(s)	195, 679, 931, 1038, 1067
NlaIII	CATG	6 cut(s)	91, 169, 188, 305, 373, 1012
NlaIV	GGNNCC	2 cut(s)	797, 1056
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	107
NspI	RCATGY	4 cut(s)	91, 169, 373, 1012
NspV	TTCGAA	1 cut(s)	23
PfeI	GAWTC	6 cut(s)	224, 313, 320, 428, 658, 970
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	90, 280
PpsI	GAGTC	2 cut(s)	90, 280
PpuMI	RGGWCCY	1 cut(s)	1055
Psp1406I	AACGTT	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	1055
Psp6I	CCWGG	1 cut(s)	1135
PspGI	CCWGG	1 cut(s)	1135
PspN4I	GGNNCC	2 cut(s)	797, 1056
PspPI	GGNCC	1 cut(s)	1055
PspPPI	RGGWCCY	1 cut(s)	1055
PsuI	RGATCY	2 cut(s)	195, 1067
PvuII	CAGCTG	1 cut(s)	1079
RsaI	GTAC	5 cut(s)	797, 939, 1025, 1121, 1127
RsaNI	GTAC	5 cut(s)	796, 938, 1024, 1120, 1126
RseI	CAYNNNNRTG	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	492, 540, 1032
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	195, 679, 931, 1038, 1067
Sau96I	GGNCC	1 cut(s)	1055
SchI	GAGTC	2 cut(s)	90, 280
ScrFI	CCNGG	3 cut(s)	482, 508, 1137
SduI	GDGCHC	2 cut(s)	71, 670
SfaNI	GCATC	4 cut(s)	92, 331, 791, 844
SfcI	CTRYAG	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	1055
SmiMI	CAYNNNNRTG	1 cut(s)	891
Sse9I	AATT	3 cut(s)	392, 675, 733
SsiI	CCGC	2 cut(s)	707, 883
SspMI	CTAG	2 cut(s)	93, 1065
StyD4I	CCNGG	3 cut(s)	480, 506, 1135
TaaI	ACNGT	4 cut(s)	20, 151, 414, 942
TaiI	ACGT	2 cut(s)	276, 443
TaqI	TCGA	2 cut(s)	23, 604
TasI	AATT	3 cut(s)	392, 675, 733
TatI	WGTACW	2 cut(s)	1023, 1119
TfiI	GAWTC	6 cut(s)	224, 313, 320, 428, 658, 970
Tru1I	TTAA	3 cut(s)	492, 540, 1032
Tru9I	TTAA	3 cut(s)	492, 540, 1032
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	8 cut(s)	232, 290, 375, 405, 707, 889, 926, 1073
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	1055
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	4 cut(s)	91, 169, 373, 1012
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	2 cut(s)	93, 1065
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.