TPLATE-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01780 AT3G01780 |
| fragaria_vesca | FvH4_5g15940 |
| malus_domestica | MD06G1184100.v1.1 MD14G1190000.v1.1 |
| prunus_persica | Prupe.5G183000_v2.0.a1 |
| pyrus_communis | pycom06g16320 pycom06g16330 pycom14g15780 |
| rosa_chinensis | RchiOBHm_Chr7g0180111 |
| rosa_laevigata | RLG00000005292 |
| rosa_multiflora | Rmu_sc0017616.1_g000007 Rmu_ssc0000119.1_g000034 |
| rosa_roxburghii | Rroxscaffold_3G00273120 |
| rosa_rugosa | Rorug06G0430700 |
| rosa_samantha | Rh7AG031100 Rh7BG031000 Rh7CG033000 Rh7DG031600 |
| rosa_wichuraiana | Rw7G002580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1116, 1123 |
| AccB1I | GGYRCC | 2 cut(s) | 916, 2456 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 495, 1945, 2606 |
| AccI | GTMKAC | 1 cut(s) | 2274 |
| AccII | CGCG | 5 cut(s) | 50, 431, 433, 1954, 3212 |
| AccIII | TCCGGA | 2 cut(s) | 214, 265 |
| AcoI | YGGCCR | 3 cut(s) | 508, 1969, 3213 |
| AcsI | RAATTY | 1 cut(s) | 1061 |
| AcuI | CTGAAG | 5 cut(s) | 59, 144, 727, 3245, 3449 |
| AcyI | GRCGYC | 4 cut(s) | 534, 891, 917, 1756 |
| AfaI | GTAC | 5 cut(s) | 1477, 1571, 2529, 2816, 3182 |
| AfeI | AGCGCT | 1 cut(s) | 703 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 214, 481, 495, 1283, 1945, 2318, 2606 |
| AflII | CTTAAG | 1 cut(s) | 2707 |
| AjnI | CCWGG | 5 cut(s) | 24, 576, 981, 1282, 1662 |
| AleI | CACNNNNGTG | 1 cut(s) | 860 |
| Alw21I | GWGCWC | 3 cut(s) | 1492, 3456, 3480 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 82, 2934, 2960 |
| Ama87I | CYCGRG | 3 cut(s) | 1435, 1751, 2219 |
| Aor13HI | TCCGGA | 2 cut(s) | 214, 265 |
| Aor51HI | AGCGCT | 1 cut(s) | 703 |
| AoxI | GGCC | 8 cut(s) | 508, 1092, 1535, 1969, 2211, 2231, 2789, 3213 |
| ApoI | RAATTY | 1 cut(s) | 1061 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 28 |
| AseI | ATTAAT | 1 cut(s) | 2403 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2921, 3424 |
| AspLEI | GCGC | 9 cut(s) | 52, 70, 82, 433, 704, 919, 1937, 3029, 3463 |
| AspS9I | GGNCC | 5 cut(s) | 31, 268, 654, 1051, 1092 |
| AsuC2I | CCSGG | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 8 cut(s) | 397, 1177, 1229, 2533, 2642, 2757, 2874, 3071 |
| AvaI | CYCGRG | 3 cut(s) | 1435, 1751, 2219 |
| AvaII | GGWCC | 4 cut(s) | 31, 268, 654, 1051 |
| BaeGI | GKGCMC | 2 cut(s) | 1261, 2461 |
| BalI | TGGCCA | 1 cut(s) | 1971 |
| BamHI | GGATCC | 3 cut(s) | 940, 2521, 2647 |
| BanI | GGYRCC | 2 cut(s) | 916, 2456 |
| BanII | GRGCYC | 1 cut(s) | 502 |
| BbsI | GAAGAC | 2 cut(s) | 1156, 3281 |
| Bbv12I | GWGCWC | 3 cut(s) | 1492, 3456, 3480 |
| BceAI | ACGGC | 4 cut(s) | 275, 521, 588, 1079 |
| BciT130I | CCWGG | 5 cut(s) | 26, 578, 983, 1284, 1664 |
| BcnI | CCSGG | 1 cut(s) | 272 |
| BfaI | CTAG | 7 cut(s) | 714, 1074, 1790, 1799, 2613, 2793, 3030 |
| BfmI | CTRYAG | 4 cut(s) | 83, 843, 1575, 2016 |
| BfoI | RGCGCY | 6 cut(s) | 71, 83, 705, 920, 3030, 3464 |
| BfrI | CTTAAG | 1 cut(s) | 2707 |
| BfuAI | ACCTGC | 2 cut(s) | 1116, 1123 |
| BglII | AGATCT | 1 cut(s) | 3228 |
| BlpI | GCTNAGC | 1 cut(s) | 3264 |
| Bme1390I | CCNGG | 6 cut(s) | 26, 272, 578, 983, 1284, 1664 |
| Bme18I | GGWCC | 4 cut(s) | 31, 268, 654, 1051 |
| BmeT110I | CYCGRG | 3 cut(s) | 1435, 1751, 2219 |
| BmgT120I | GGNCC | 5 cut(s) | 31, 268, 654, 1051, 1092 |
| BmiI | GGNNCC | 9 cut(s) | 270, 918, 942, 1052, 2006, 2295, 2458, 2523, 2649 |
| BmrFI | CCNGG | 6 cut(s) | 26, 272, 578, 983, 1284, 1664 |
| BmsI | GCATC | 6 cut(s) | 432, 1185, 1303, 1870, 3110, 3119 |
| BpiI | GAAGAC | 2 cut(s) | 1156, 3281 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 572, 604 |
| BpmI | CTGGAG | 1 cut(s) | 2121 |
| Bpu10I | CCTNAGC | 1 cut(s) | 238 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 3264 |
| BpuEI | CTTGAG | 4 cut(s) | 1195, 1535, 2163, 2469 |
| BpuMI | CCSGG | 1 cut(s) | 272 |
| BsaHI | GRCGYC | 4 cut(s) | 534, 891, 917, 1756 |
| BsaI | GGTCTC | 3 cut(s) | 476, 490, 670 |
| BsaJI | CCNNGG | 9 cut(s) | 543, 672, 822, 1283, 1627, 1662, 1750, 2605, 3210 |
| BsaWI | WCCGGW | 4 cut(s) | 214, 265, 791, 2318 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 470, 500, 524, 554, 2685, 2715, 2991, 3021 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 214, 481, 495, 1283, 1945, 2318, 2606 |
| Bse1I | ACTGG | 9 cut(s) | 58, 497, 1347, 1402, 1483, 1502, 1972, 2768, 2824 |
| Bse3DI | GCAATG | 1 cut(s) | 1386 |
| BseAI | TCCGGA | 2 cut(s) | 214, 265 |
| BseBI | CCWGG | 5 cut(s) | 26, 578, 983, 1284, 1664 |
| BseDI | CCNNGG | 9 cut(s) | 543, 672, 822, 1283, 1627, 1662, 1750, 2605, 3210 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 214, 481, 495, 1283, 1945, 2318, 2606 |
| BseMI | GCAATG | 1 cut(s) | 1386 |
| BseMII | CTCAG | 6 cut(s) | 32, 252, 345, 909, 2730, 3278 |
| BseNI | ACTGG | 9 cut(s) | 58, 497, 1347, 1402, 1483, 1502, 1972, 2768, 2824 |
| BseRI | GAGGAG | 7 cut(s) | 152, 464, 712, 1647, 2133, 2472, 3305 |
| BseSI | GKGCMC | 2 cut(s) | 1261, 2461 |
| BseX3I | CGGCCG | 1 cut(s) | 3213 |
| BsgI | GTGCAG | 1 cut(s) | 1094 |
| Bsh1236I | CGCG | 5 cut(s) | 50, 431, 433, 1954, 3212 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2859, 3216 |
| BshFI | GGCC | 8 cut(s) | 510, 1094, 1537, 1971, 2213, 2233, 2791, 3215 |
| BshNI | GGYRCC | 2 cut(s) | 916, 2456 |
| BsiEI | CGRYCG | 2 cut(s) | 2859, 3216 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1492, 3456, 3480 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1435, 1751, 2219 |
| BsiSI | CCGG | 8 cut(s) | 99, 155, 215, 266, 272, 792, 996, 2319 |
| BsiWI | CGTACG | 1 cut(s) | 1569 |
| BslFI | GGGAC | 4 cut(s) | 239, 1064, 1300, 2539 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 214, 481, 495, 1283, 1945, 2318, 2606 |
| BsmBI | CGTCTC | 3 cut(s) | 298, 544, 898 |
| BsmFI | GGGAC | 4 cut(s) | 239, 1064, 1300, 2539 |
| BsmI | GAATGC | 1 cut(s) | 182 |
| BsnI | GGCC | 8 cut(s) | 510, 1094, 1537, 1971, 2213, 2233, 2791, 3215 |
| Bso31I | GGTCTC | 3 cut(s) | 476, 490, 670 |
| BsoBI | CYCGRG | 3 cut(s) | 1435, 1751, 2219 |
| Bsp1286I | GDGCHC | 6 cut(s) | 502, 1261, 1492, 2461, 3456, 3480 |
| Bsp13I | TCCGGA | 2 cut(s) | 214, 265 |
| Bsp1407I | TGTACA | 1 cut(s) | 2527 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 3264 |
| Bsp19I | CCATGG | 1 cut(s) | 672 |
| BspANI | GGCC | 8 cut(s) | 510, 1094, 1537, 1971, 2213, 2233, 2791, 3215 |
| BspCNI | CTCAG | 6 cut(s) | 31, 251, 346, 908, 2731, 3277 |
| BspEI | TCCGGA | 2 cut(s) | 214, 265 |
| BspFNI | CGCG | 5 cut(s) | 50, 431, 433, 1954, 3212 |
| BspHI | TCATGA | 1 cut(s) | 2658 |
| BspLI | GGNNCC | 9 cut(s) | 270, 918, 942, 1052, 2006, 2295, 2458, 2523, 2649 |
| BspMAI | CTGCAG | 3 cut(s) | 87, 847, 2020 |
| BspMI | ACCTGC | 2 cut(s) | 1116, 1123 |
| BspQI | GCTCTTC | 1 cut(s) | 1362 |
| BspT107I | GGYRCC | 2 cut(s) | 916, 2456 |
| BspTI | CTTAAG | 1 cut(s) | 2707 |
| BspTNI | GGTCTC | 3 cut(s) | 476, 490, 670 |
| BsrDI | GCAATG | 1 cut(s) | 1386 |
| BsrGI | TGTACA | 1 cut(s) | 2527 |
| BsrI | ACTGG | 9 cut(s) | 58, 497, 1347, 1402, 1483, 1502, 1972, 2768, 2824 |
| BssECI | CCNNGG | 9 cut(s) | 543, 672, 822, 1283, 1627, 1662, 1750, 2605, 3210 |
| BssNI | GRCGYC | 4 cut(s) | 534, 891, 917, 1756 |
| BssT1I | CCWWGG | 3 cut(s) | 543, 672, 822 |
| Bst2UI | CCWGG | 5 cut(s) | 26, 578, 983, 1284, 1664 |
| BstACI | GRCGYC | 4 cut(s) | 534, 891, 917, 1756 |
| BstAFI | CTTAAG | 1 cut(s) | 2707 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 851, 992, 1699 |
| BstAUI | TGTACA | 1 cut(s) | 2527 |
| BstC8I | GCNNGC | 8 cut(s) | 180, 613, 1004, 1200, 1969, 2798, 2802, 2962 |
| BstDEI | CTNAG | 8 cut(s) | 18, 123, 238, 354, 895, 2739, 3264, 3429 |
| BstDSI | CCRYGG | 4 cut(s) | 672, 1627, 2605, 3210 |
| BstEII | GGTNACC | 1 cut(s) | 904 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 479 |
| BstFNI | CGCG | 5 cut(s) | 50, 431, 433, 1954, 3212 |
| BstH2I | RGCGCY | 6 cut(s) | 71, 83, 705, 920, 3030, 3464 |
| BstHHI | GCGC | 9 cut(s) | 52, 70, 82, 433, 704, 919, 1937, 3029, 3463 |
| BstMCI | CGRYCG | 2 cut(s) | 2859, 3216 |
| BstNI | CCWGG | 5 cut(s) | 26, 578, 983, 1284, 1664 |
| BstNSI | RCATGY | 3 cut(s) | 520, 976, 3187 |
| BstPI | GGTNACC | 1 cut(s) | 904 |
| BstSCI | CCNGG | 6 cut(s) | 24, 270, 576, 981, 1282, 1662 |
| BstSFI | CTRYAG | 4 cut(s) | 83, 843, 1575, 2016 |
| BstSLI | GKGCMC | 2 cut(s) | 1261, 2461 |
| BstUI | CGCG | 5 cut(s) | 50, 431, 433, 1954, 3212 |
| BstV2I | GAAGAC | 2 cut(s) | 1156, 3281 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 862 |
| BstZI | CGGCCG | 1 cut(s) | 3213 |
| BsuRI | GGCC | 8 cut(s) | 510, 1094, 1537, 1971, 2213, 2233, 2791, 3215 |
| BtgI | CCRYGG | 4 cut(s) | 672, 1627, 2605, 3210 |
| BtsI | GCAGTG | 4 cut(s) | 2332, 2496, 2542, 3480 |
| BtsIMutI | CAGTG | 8 cut(s) | 750, 2241, 2332, 2496, 2542, 2732, 2817, 3480 |
| BveI | ACCTGC | 2 cut(s) | 1116, 1123 |
| Cac8I | GCNNGC | 8 cut(s) | 180, 613, 1004, 1200, 1969, 2798, 2802, 2962 |
| CaiI | CAGNNNCTG | 3 cut(s) | 82, 2934, 2960 |
| CciI | TCATGA | 1 cut(s) | 2658 |
| CfoI | GCGC | 9 cut(s) | 52, 70, 82, 433, 704, 919, 1937, 3029, 3463 |
| Cfr13I | GGNCC | 5 cut(s) | 31, 268, 654, 1051, 1092 |
| Cfr42I | CCGCGG | 1 cut(s) | 3213 |
| CseI | GACGC | 5 cut(s) | 56, 542, 880, 1745, 1943 |
| Csp6I | GTAC | 5 cut(s) | 1476, 1570, 2528, 2815, 3181 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1368, 1403 |
| CviQI | GTAC | 5 cut(s) | 1476, 1570, 2528, 2815, 3181 |
| DdeI | CTNAG | 8 cut(s) | 18, 123, 238, 354, 895, 2739, 3264, 3429 |
| DinI | GGCGCC | 1 cut(s) | 918 |
| EaeI | YGGCCR | 3 cut(s) | 508, 1969, 3213 |
| EagI | CGGCCG | 1 cut(s) | 3213 |
| EciI | GGCGGA | 2 cut(s) | 44, 82 |
| EclXI | CGGCCG | 1 cut(s) | 3213 |
| Eco130I | CCWWGG | 3 cut(s) | 543, 672, 822 |
| Eco147I | AGGCCT | 1 cut(s) | 1537 |
| Eco24I | GRGCYC | 1 cut(s) | 502 |
| Eco31I | GGTCTC | 3 cut(s) | 476, 490, 670 |
| Eco32I | GATATC | 1 cut(s) | 109 |
| Eco47I | GGWCC | 4 cut(s) | 31, 268, 654, 1051 |
| Eco47III | AGCGCT | 1 cut(s) | 703 |
| Eco52I | CGGCCG | 1 cut(s) | 3213 |
| Eco57I | CTGAAG | 5 cut(s) | 59, 144, 727, 3245, 3449 |
| Eco88I | CYCGRG | 3 cut(s) | 1435, 1751, 2219 |
| Eco91I | GGTNACC | 1 cut(s) | 904 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 479 |
| EcoO65I | GGTNACC | 1 cut(s) | 904 |
| EcoRII | CCWGG | 5 cut(s) | 24, 576, 981, 1282, 1662 |
| EcoRV | GATATC | 1 cut(s) | 109 |
| EcoT14I | CCWWGG | 3 cut(s) | 543, 672, 822 |
| EcoT38I | GRGCYC | 1 cut(s) | 502 |
| EgeI | GGCGCC | 1 cut(s) | 918 |
| EheI | GGCGCC | 1 cut(s) | 918 |
| ErhI | CCWWGG | 3 cut(s) | 543, 672, 822 |
| Esp3I | CGTCTC | 3 cut(s) | 298, 544, 898 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 536, 568, 1853, 1885, 2368, 2400 |
| FaqI | GGGAC | 4 cut(s) | 239, 1064, 1300, 2539 |
| FauI | CCCGC | 1 cut(s) | 212 |
| FauNDI | CATATG | 2 cut(s) | 1128, 1471 |
| FblI | GTMKAC | 1 cut(s) | 2274 |
| FriOI | GRGCYC | 1 cut(s) | 502 |
| FspBI | CTAG | 7 cut(s) | 714, 1074, 1790, 1799, 2613, 2793, 3030 |
| GlaI | GCGC | 9 cut(s) | 51, 69, 81, 432, 703, 918, 1936, 3028, 3462 |
| GsuI | CTGGAG | 1 cut(s) | 2121 |
| HaeII | RGCGCY | 6 cut(s) | 71, 83, 705, 920, 3030, 3464 |
| HaeIII | GGCC | 8 cut(s) | 510, 1094, 1537, 1971, 2213, 2233, 2791, 3215 |
| HapII | CCGG | 8 cut(s) | 99, 155, 215, 266, 272, 792, 996, 2319 |
| HgaI | GACGC | 5 cut(s) | 56, 542, 880, 1745, 1943 |
| HhaI | GCGC | 9 cut(s) | 52, 70, 82, 433, 704, 919, 1937, 3029, 3463 |
| Hin1I | GRCGYC | 4 cut(s) | 534, 891, 917, 1756 |
| Hin6I | GCGC | 9 cut(s) | 50, 68, 80, 431, 702, 917, 1935, 3027, 3461 |
| HinP1I | GCGC | 9 cut(s) | 50, 68, 80, 431, 702, 917, 1935, 3027, 3461 |
| HincII | GTYRAC | 4 cut(s) | 628, 679, 2275, 3526 |
| HindII | GTYRAC | 4 cut(s) | 628, 679, 2275, 3526 |
| HindIII | AAGCTT | 2 cut(s) | 2144, 2346 |
| HpaI | GTTAAC | 1 cut(s) | 3526 |
| HpaII | CCGG | 8 cut(s) | 99, 155, 215, 266, 272, 792, 996, 2319 |
| HphI | GGTGA | 8 cut(s) | 397, 1177, 1229, 2533, 2642, 2757, 2874, 3071 |
| Hpy166II | GTNNAC | 7 cut(s) | 628, 679, 865, 1237, 2275, 2817, 3526 |
| Hpy188III | TCNNGA | 9 cut(s) | 215, 266, 1364, 1790, 1799, 2084, 2180, 2219, 2659 |
| Hpy8I | GTNNAC | 7 cut(s) | 628, 679, 865, 1237, 2275, 2817, 3526 |
| Hpy99I | CGWCG | 2 cut(s) | 536, 566 |
| HpyCH4IV | ACGT | 3 cut(s) | 1568, 1705, 2990 |
| HpyF3I | CTNAG | 8 cut(s) | 18, 123, 238, 354, 895, 2739, 3264, 3429 |
| HpySE526I | ACGT | 3 cut(s) | 1568, 1705, 2990 |
| Hsp92I | GRCGYC | 4 cut(s) | 534, 891, 917, 1756 |
| HspAI | GCGC | 9 cut(s) | 50, 68, 80, 431, 702, 917, 1935, 3027, 3461 |
| KasI | GGCGCC | 1 cut(s) | 916 |
| Kpn2I | TCCGGA | 2 cut(s) | 214, 265 |
| KspAI | GTTAAC | 1 cut(s) | 3526 |
| KspI | CCGCGG | 1 cut(s) | 3213 |
| LguI | GCTCTTC | 1 cut(s) | 1362 |
| LmnI | GCTCC | 2 cut(s) | 699, 3483 |
| LweI | GCATC | 6 cut(s) | 432, 1185, 1303, 1870, 3110, 3119 |
| MaeI | CTAG | 7 cut(s) | 714, 1074, 1790, 1799, 2613, 2793, 3030 |
| MaeII | ACGT | 3 cut(s) | 1568, 1705, 2990 |
| MhlI | GDGCHC | 6 cut(s) | 502, 1261, 1492, 2461, 3456, 3480 |
| MlsI | TGGCCA | 1 cut(s) | 1971 |
| MluCI | AATT | 9 cut(s) | 966, 1035, 1061, 1592, 2189, 2202, 2246, 2404, 2558 |
| MluNI | TGGCCA | 1 cut(s) | 1971 |
| Mly113I | GGCGCC | 1 cut(s) | 917 |
| MlyI | GAGTC | 8 cut(s) | 564, 566, 581, 860, 2270, 2892, 2940, 3140 |
| MmeI | TCCRAC | 6 cut(s) | 513, 555, 894, 1199, 2425, 3114 |
| Mox20I | TGGCCA | 1 cut(s) | 1971 |
| MroI | TCCGGA | 2 cut(s) | 214, 265 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2921, 3424 |
| MscI | TGGCCA | 1 cut(s) | 1971 |
| MslI | CAYNNNNRTG | 4 cut(s) | 860, 1617, 2828, 3077 |
| Msp20I | TGGCCA | 1 cut(s) | 1971 |
| MspA1I | CMGCKG | 6 cut(s) | 164, 287, 1886, 2174, 2804, 3212 |
| MspCI | CTTAAG | 1 cut(s) | 2707 |
| MspI | CCGG | 8 cut(s) | 99, 155, 215, 266, 272, 792, 996, 2319 |
| MspR9I | CCNGG | 6 cut(s) | 26, 272, 578, 983, 1284, 1664 |
| Mva1269I | GAATGC | 1 cut(s) | 182 |
| MvaI | CCWGG | 5 cut(s) | 26, 578, 983, 1284, 1664 |
| MvnI | CGCG | 5 cut(s) | 50, 431, 433, 1954, 3212 |
| NarI | GGCGCC | 1 cut(s) | 917 |
| NciI | CCSGG | 1 cut(s) | 272 |
| NcoI | CCATGG | 1 cut(s) | 672 |
| NdeI | CATATG | 2 cut(s) | 1128, 1471 |
| NlaIV | GGNNCC | 9 cut(s) | 270, 918, 942, 1052, 2006, 2295, 2458, 2523, 2649 |
| NmeAIII | GCCGAG | 2 cut(s) | 901, 3241 |
| NmuCI | GTSAC | 4 cut(s) | 2380, 2539, 2630, 3059 |
| NspI | RCATGY | 3 cut(s) | 520, 976, 3187 |
| OliI | CACNNNNGTG | 1 cut(s) | 860 |
| PaeR7I | CTCGAG | 1 cut(s) | 2219 |
| PagI | TCATGA | 1 cut(s) | 2658 |
| PceI | AGGCCT | 1 cut(s) | 1537 |
| PciSI | GCTCTTC | 1 cut(s) | 1362 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 528, 630 |
| PctI | GAATGC | 1 cut(s) | 182 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2921, 3424 |
| PfeI | GAWTC | 5 cut(s) | 374, 1184, 1746, 2425, 3296 |
| Pfl23II | CGTACG | 1 cut(s) | 1569 |
| PflFI | GACNNNGTC | 2 cut(s) | 482, 536 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 495, 1945, 2606 |
| PfoI | TCCNGGA | 1 cut(s) | 576 |
| PleI | GAGTC | 8 cut(s) | 564, 565, 581, 860, 2270, 2892, 2939, 3139 |
| PluTI | GGCGCC | 1 cut(s) | 920 |
| PpsI | GAGTC | 8 cut(s) | 564, 565, 581, 860, 2270, 2892, 2939, 3139 |
| PshBI | ATTAAT | 1 cut(s) | 2403 |
| Psp6I | CCWGG | 5 cut(s) | 24, 576, 981, 1282, 1662 |
| PspEI | GGTNACC | 1 cut(s) | 904 |
| PspGI | CCWGG | 5 cut(s) | 24, 576, 981, 1282, 1662 |
| PspLI | CGTACG | 1 cut(s) | 1569 |
| PspN4I | GGNNCC | 9 cut(s) | 270, 918, 942, 1052, 2006, 2295, 2458, 2523, 2649 |
| PspPI | GGNCC | 5 cut(s) | 31, 268, 654, 1051, 1092 |
| PstI | CTGCAG | 3 cut(s) | 87, 847, 2020 |
| PstNI | CAGNNNCTG | 3 cut(s) | 82, 2934, 2960 |
| PsyI | GACNNNGTC | 2 cut(s) | 482, 536 |
| PvuII | CAGCTG | 3 cut(s) | 164, 2174, 2804 |
| RsaI | GTAC | 5 cut(s) | 1477, 1571, 2529, 2816, 3182 |
| RsaNI | GTAC | 5 cut(s) | 1476, 1570, 2528, 2815, 3181 |
| RseI | CAYNNNNRTG | 4 cut(s) | 860, 1617, 2828, 3077 |
| SacII | CCGCGG | 1 cut(s) | 3213 |
| SalI | GTCGAC | 1 cut(s) | 2273 |
| SapI | GCTCTTC | 1 cut(s) | 1362 |
| Sau96I | GGNCC | 5 cut(s) | 31, 268, 654, 1051, 1092 |
| SchI | GAGTC | 8 cut(s) | 564, 566, 581, 860, 2270, 2892, 2940, 3140 |
| ScrFI | CCNGG | 6 cut(s) | 26, 272, 578, 983, 1284, 1664 |
| SduI | GDGCHC | 6 cut(s) | 502, 1261, 1492, 2461, 3456, 3480 |
| SfaNI | GCATC | 6 cut(s) | 432, 1185, 1303, 1870, 3110, 3119 |
| SfcI | CTRYAG | 4 cut(s) | 83, 843, 1575, 2016 |
| SfoI | GGCGCC | 1 cut(s) | 918 |
| Sfr274I | CTCGAG | 1 cut(s) | 2219 |
| Sfr303I | CCGCGG | 1 cut(s) | 3213 |
| SgrBI | CCGCGG | 1 cut(s) | 3213 |
| SinI | GGWCC | 4 cut(s) | 31, 268, 654, 1051 |
| SlaI | CTCGAG | 1 cut(s) | 2219 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 860, 1617, 2828, 3077 |
| SmlI | CTYRAG | 6 cut(s) | 1174, 1514, 2178, 2219, 2484, 2707 |
| SmoI | CTYRAG | 6 cut(s) | 1174, 1514, 2178, 2219, 2484, 2707 |
| Sse9I | AATT | 9 cut(s) | 966, 1035, 1061, 1592, 2189, 2202, 2246, 2404, 2558 |
| SseBI | AGGCCT | 1 cut(s) | 1537 |
| SspDI | GGCGCC | 1 cut(s) | 916 |
| SspI | AATATT | 3 cut(s) | 1674, 1840, 2052 |
| SspMI | CTAG | 7 cut(s) | 714, 1074, 1790, 1799, 2613, 2793, 3030 |
| StuI | AGGCCT | 1 cut(s) | 1537 |
| StyD4I | CCNGG | 6 cut(s) | 24, 270, 576, 981, 1282, 1662 |
| StyI | CCWWGG | 3 cut(s) | 543, 672, 822 |
| TaiI | ACGT | 3 cut(s) | 1571, 1708, 2993 |
| TasI | AATT | 9 cut(s) | 966, 1035, 1061, 1592, 2189, 2202, 2246, 2404, 2558 |
| TatI | WGTACW | 3 cut(s) | 2527, 2814, 3180 |
| TauI | GCSGC | 8 cut(s) | 98, 287, 308, 1886, 2497, 2847, 2864, 3215 |
| TfiI | GAWTC | 5 cut(s) | 374, 1184, 1746, 2425, 3296 |
| TscAI | CASTG | 8 cut(s) | 757, 2248, 2332, 2496, 2542, 2739, 2824, 3480 |
| TseFI | GTSAC | 4 cut(s) | 2380, 2539, 2630, 3059 |
| Tsp45I | GTSAC | 4 cut(s) | 2380, 2539, 2630, 3059 |
| TspDTI | ATGAA | 6 cut(s) | 248, 2458, 2675, 2839, 2850, 3357 |
| TspGWI | ACGGA | 4 cut(s) | 26, 266, 550, 2594 |
| TspRI | CASTG | 8 cut(s) | 757, 2248, 2332, 2496, 2542, 2739, 2824, 3480 |
| Tth111I | GACNNNGTC | 2 cut(s) | 482, 536 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 495, 1945, 2606 |
| Vha464I | CTTAAG | 1 cut(s) | 2707 |
| VpaK11BI | GGWCC | 4 cut(s) | 31, 268, 654, 1051 |
| VspI | ATTAAT | 1 cut(s) | 2403 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 479 |
| XapI | RAATTY | 1 cut(s) | 1061 |
| XbaI | TCTAGA | 2 cut(s) | 1789, 1798 |
| XceI | RCATGY | 3 cut(s) | 520, 976, 3187 |
| XhoI | CTCGAG | 1 cut(s) | 2219 |
| XmiI | GTMKAC | 1 cut(s) | 2274 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2921, 3424 |
| XspI | CTAG | 7 cut(s) | 714, 1074, 1790, 1799, 2613, 2793, 3030 |