TPLATE-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01780 AT3G01780 |
| fragaria_vesca | FvH4_5g15940 |
| malus_domestica | MD06G1184100.v1.1 MD14G1190000.v1.1 |
| prunus_persica | Prupe.5G183000_v2.0.a1 |
| pyrus_communis | pycom06g16320 pycom06g16330 pycom14g15780 |
| rosa_chinensis | RchiOBHm_Chr7g0180111 |
| rosa_laevigata | RLG00000005292 |
| rosa_multiflora | Rmu_sc0017616.1_g000007 Rmu_ssc0000119.1_g000034 |
| rosa_roxburghii | Rroxscaffold_3G00273120 |
| rosa_rugosa | Rorug06G0430700 |
| rosa_samantha | Rh7AG031100 Rh7BG031000 Rh7CG033000 Rh7DG031600 |
| rosa_wichuraiana | Rw7G002580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 243 |
| Acc36I | ACCTGC | 1 cut(s) | 243 |
| AccBSI | CCGCTC | 1 cut(s) | 168 |
| AciI | CCGC | 3 cut(s) | 103, 168, 179 |
| AclWI | GGATC | 5 cut(s) | 118, 392, 485, 681, 694 |
| AcsI | RAATTY | 1 cut(s) | 565 |
| AfaI | GTAC | 2 cut(s) | 654, 694 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 128, 129 |
| AgsI | TTSAA | 4 cut(s) | 34, 57, 155, 556 |
| AjnI | CCWGG | 1 cut(s) | 122 |
| AluBI | AGCT | 4 cut(s) | 332, 338, 385, 583 |
| AluI | AGCT | 4 cut(s) | 332, 338, 385, 583 |
| Alw21I | GWGCWC | 1 cut(s) | 100 |
| Alw26I | GTCTC | 2 cut(s) | 645, 722 |
| AlwI | GGATC | 5 cut(s) | 118, 392, 485, 681, 694 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 139 |
| AoxI | GGCC | 2 cut(s) | 126, 392 |
| ApeKI | GCWGC | 3 cut(s) | 332, 335, 700 |
| ApoI | RAATTY | 1 cut(s) | 565 |
| AspS9I | GGNCC | 1 cut(s) | 126 |
| AsuC2I | CCSGG | 2 cut(s) | 130, 590 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 293 |
| AsuII | TTCGAA | 1 cut(s) | 11 |
| BamHI | GGATCC | 1 cut(s) | 686 |
| Bbv12I | GWGCWC | 1 cut(s) | 100 |
| BbvI | GCAGC | 3 cut(s) | 319, 347, 712 |
| BccI | CCATC | 2 cut(s) | 527, 629 |
| BceAI | ACGGC | 2 cut(s) | 189, 671 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 314, 348 |
| BciT130I | CCWGG | 1 cut(s) | 124 |
| BcnI | CCSGG | 2 cut(s) | 130, 590 |
| BcoDI | GTCTC | 2 cut(s) | 645, 722 |
| BfaI | CTAG | 5 cut(s) | 71, 380, 402, 462, 528 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BfuAI | ACCTGC | 1 cut(s) | 243 |
| BisI | GCNGC | 3 cut(s) | 333, 336, 701 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 3 cut(s) | 334, 337, 702 |
| BmcAI | AGTACT | 1 cut(s) | 694 |
| Bme1390I | CCNGG | 3 cut(s) | 124, 130, 590 |
| BmgT120I | GGNCC | 1 cut(s) | 126 |
| BmiI | GGNNCC | 1 cut(s) | 688 |
| BmrFI | CCNGG | 3 cut(s) | 124, 130, 590 |
| BmrI | ACTGGG | 1 cut(s) | 489 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BmuI | ACTGGG | 1 cut(s) | 489 |
| Bpu10I | CCTNAGC | 1 cut(s) | 339 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| Bpu14I | TTCGAA | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 2 cut(s) | 599, 630 |
| BpuMI | CCSGG | 2 cut(s) | 130, 590 |
| BsaI | GGTCTC | 1 cut(s) | 645 |
| BsaJI | CCNNGG | 2 cut(s) | 122, 123 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 157, 187 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 128, 129 |
| Bse1I | ACTGG | 3 cut(s) | 316, 484, 690 |
| BseBI | CCWGG | 1 cut(s) | 124 |
| BseDI | CCNNGG | 2 cut(s) | 122, 123 |
| BseGI | GGATG | 3 cut(s) | 15, 241, 640 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 128, 129 |
| BseMII | CTCAG | 2 cut(s) | 113, 353 |
| BseNI | ACTGG | 3 cut(s) | 316, 484, 690 |
| BseRI | GAGGAG | 1 cut(s) | 633 |
| BseXI | GCAGC | 3 cut(s) | 319, 347, 712 |
| BsgI | GTGCAG | 1 cut(s) | 533 |
| BshFI | GGCC | 2 cut(s) | 128, 394 |
| BsiHKAI | GWGCWC | 1 cut(s) | 100 |
| BsiSI | CCGG | 2 cut(s) | 129, 589 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 128, 129 |
| BsmAI | GTCTC | 2 cut(s) | 645, 722 |
| BsnI | GGCC | 2 cut(s) | 128, 394 |
| Bso31I | GGTCTC | 1 cut(s) | 645 |
| Bsp119I | TTCGAA | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 1 cut(s) | 100 |
| Bsp143I | GATC | 4 cut(s) | 110, 397, 490, 686 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| BspACI | CCGC | 3 cut(s) | 103, 168, 179 |
| BspANI | GGCC | 2 cut(s) | 128, 394 |
| BspCNI | CTCAG | 2 cut(s) | 112, 352 |
| BspLI | GGNNCC | 1 cut(s) | 688 |
| BspMAI | CTGCAG | 1 cut(s) | 337 |
| BspMI | ACCTGC | 1 cut(s) | 243 |
| BspPI | GGATC | 5 cut(s) | 118, 392, 485, 681, 694 |
| BspT104I | TTCGAA | 1 cut(s) | 11 |
| BspTNI | GGTCTC | 1 cut(s) | 645 |
| BsrBI | CCGCTC | 1 cut(s) | 168 |
| BsrI | ACTGG | 3 cut(s) | 316, 484, 690 |
| BssECI | CCNNGG | 2 cut(s) | 122, 123 |
| BssMI | GATC | 4 cut(s) | 110, 397, 490, 686 |
| Bst2UI | CCWGG | 1 cut(s) | 124 |
| Bst4CI | ACNGT | 2 cut(s) | 313, 710 |
| Bst6I | CTCTTC | 1 cut(s) | 150 |
| BstBI | TTCGAA | 1 cut(s) | 11 |
| BstDEI | CTNAG | 2 cut(s) | 99, 339 |
| BstF5I | GGATG | 3 cut(s) | 15, 241, 640 |
| BstKTI | GATC | 4 cut(s) | 113, 400, 493, 689 |
| BstMAI | GTCTC | 2 cut(s) | 645, 722 |
| BstMBI | GATC | 4 cut(s) | 110, 397, 490, 686 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 391 |
| BstNI | CCWGG | 1 cut(s) | 124 |
| BstSCI | CCNGG | 3 cut(s) | 122, 128, 588 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstV1I | GCAGC | 3 cut(s) | 319, 347, 712 |
| BstX2I | RGATCY | 2 cut(s) | 397, 686 |
| BstYI | RGATCY | 2 cut(s) | 397, 686 |
| BsuRI | GGCC | 2 cut(s) | 128, 394 |
| BtsCI | GGATG | 3 cut(s) | 15, 241, 640 |
| BtsI | GCAGTG | 1 cut(s) | 493 |
| BtsIMutI | CAGTG | 1 cut(s) | 493 |
| BveI | ACCTGC | 1 cut(s) | 243 |
| CaiI | CAGNNNCTG | 1 cut(s) | 139 |
| Cfr13I | GGNCC | 1 cut(s) | 126 |
| Csp6I | GTAC | 2 cut(s) | 653, 693 |
| CviQI | GTAC | 2 cut(s) | 653, 693 |
| DdeI | CTNAG | 2 cut(s) | 99, 339 |
| DpnI | GATC | 4 cut(s) | 112, 399, 492, 688 |
| DpnII | GATC | 4 cut(s) | 110, 397, 490, 686 |
| Eam1104I | CTCTTC | 1 cut(s) | 150 |
| EarI | CTCTTC | 1 cut(s) | 150 |
| EciI | GGCGGA | 1 cut(s) | 194 |
| Eco31I | GGTCTC | 1 cut(s) | 645 |
| Eco32I | GATATC | 2 cut(s) | 512, 543 |
| EcoRII | CCWGG | 1 cut(s) | 122 |
| EcoRV | GATATC | 2 cut(s) | 512, 543 |
| FaiI | YATR | 8 cut(s) | 38, 94, 176, 231, 303, 369, 625, 632 |
| Fnu4HI | GCNGC | 3 cut(s) | 333, 336, 701 |
| FokI | GGATG | 3 cut(s) | 2, 228, 647 |
| Fsp4HI | GCNGC | 3 cut(s) | 333, 336, 701 |
| FspBI | CTAG | 5 cut(s) | 71, 380, 402, 462, 528 |
| GluI | GCNGC | 3 cut(s) | 333, 336, 701 |
| HaeIII | GGCC | 2 cut(s) | 128, 394 |
| HapII | CCGG | 2 cut(s) | 129, 589 |
| HincII | GTYRAC | 2 cut(s) | 190, 436 |
| HindII | GTYRAC | 2 cut(s) | 190, 436 |
| HinfI | GANTC | 6 cut(s) | 41, 53, 182, 222, 437, 524 |
| HpaI | GTTAAC | 1 cut(s) | 190 |
| HpaII | CCGG | 2 cut(s) | 129, 589 |
| HphI | GGTGA | 2 cut(s) | 290, 293 |
| Hpy166II | GTNNAC | 3 cut(s) | 190, 407, 436 |
| Hpy188I | TCNGA | 1 cut(s) | 201 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 163, 245, 341, 380 |
| Hpy8I | GTNNAC | 3 cut(s) | 190, 407, 436 |
| HpyAV | CCTTC | 4 cut(s) | 350, 425, 531, 550 |
| HpyCH4III | ACNGT | 2 cut(s) | 313, 710 |
| HpyCH4V | TGCA | 6 cut(s) | 217, 335, 467, 550, 620, 700 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 391 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 339 |
| KspAI | GTTAAC | 1 cut(s) | 190 |
| Kzo9I | GATC | 4 cut(s) | 110, 397, 490, 686 |
| LmnI | GCTCC | 2 cut(s) | 165, 483 |
| Lsp1109I | GCAGC | 3 cut(s) | 319, 347, 712 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeI | CTAG | 5 cut(s) | 71, 380, 402, 462, 528 |
| MaeIII | GTNAC | 5 cut(s) | 135, 232, 281, 296, 704 |
| MalI | GATC | 4 cut(s) | 112, 399, 492, 688 |
| MbiI | CCGCTC | 1 cut(s) | 168 |
| MboI | GATC | 4 cut(s) | 110, 397, 490, 686 |
| MboII | GAAGA | 1 cut(s) | 167 |
| MflI | RGATCY | 2 cut(s) | 397, 686 |
| MhlI | GDGCHC | 1 cut(s) | 100 |
| MluCI | AATT | 3 cut(s) | 350, 468, 565 |
| MlyI | GAGTC | 1 cut(s) | 431 |
| MnlI | CCTC | 5 cut(s) | 272, 384, 468, 499, 654 |
| MseI | TTAA | 3 cut(s) | 189, 563, 569 |
| MspA1I | CMGCKG | 1 cut(s) | 103 |
| MspI | CCGG | 2 cut(s) | 129, 589 |
| MspR9I | CCNGG | 3 cut(s) | 124, 130, 590 |
| MvaI | CCWGG | 1 cut(s) | 124 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 391 |
| NciI | CCSGG | 2 cut(s) | 130, 590 |
| NdeII | GATC | 4 cut(s) | 110, 397, 490, 686 |
| NlaIV | GGNNCC | 1 cut(s) | 688 |
| NmuCI | GTSAC | 3 cut(s) | 281, 296, 704 |
| NspV | TTCGAA | 1 cut(s) | 11 |
| PaqCI | CACCTGC | 1 cut(s) | 243 |
| PasI | CCCWGGG | 1 cut(s) | 123 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 661 |
| PfeI | GAWTC | 5 cut(s) | 41, 53, 182, 222, 524 |
| PkrI | GCNGC | 3 cut(s) | 334, 337, 702 |
| PleI | GAGTC | 1 cut(s) | 431 |
| PpsI | GAGTC | 1 cut(s) | 431 |
| Psp6I | CCWGG | 1 cut(s) | 122 |
| PspGI | CCWGG | 1 cut(s) | 122 |
| PspN4I | GGNNCC | 1 cut(s) | 688 |
| PspPI | GGNCC | 1 cut(s) | 126 |
| PstI | CTGCAG | 1 cut(s) | 337 |
| PstNI | CAGNNNCTG | 1 cut(s) | 139 |
| PsuI | RGATCY | 2 cut(s) | 397, 686 |
| RsaI | GTAC | 2 cut(s) | 654, 694 |
| RsaNI | GTAC | 2 cut(s) | 653, 693 |
| SaqAI | TTAA | 3 cut(s) | 189, 563, 569 |
| SatI | GCNGC | 3 cut(s) | 333, 336, 701 |
| Sau3AI | GATC | 4 cut(s) | 110, 397, 490, 686 |
| Sau96I | GGNCC | 1 cut(s) | 126 |
| ScaI | AGTACT | 1 cut(s) | 694 |
| SchI | GAGTC | 1 cut(s) | 431 |
| ScrFI | CCNGG | 3 cut(s) | 124, 130, 590 |
| SduI | GDGCHC | 1 cut(s) | 100 |
| SetI | ASST | 8 cut(s) | 27, 257, 283, 334, 340, 387, 561, 585 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| SfuI | TTCGAA | 1 cut(s) | 11 |
| SmlI | CTYRAG | 2 cut(s) | 578, 645 |
| SmoI | CTYRAG | 2 cut(s) | 578, 645 |
| Sse9I | AATT | 3 cut(s) | 350, 468, 565 |
| SsiI | CCGC | 3 cut(s) | 103, 168, 179 |
| SspMI | CTAG | 5 cut(s) | 71, 380, 402, 462, 528 |
| StyD4I | CCNGG | 3 cut(s) | 122, 128, 588 |
| TaaI | ACNGT | 2 cut(s) | 313, 710 |
| TaqI | TCGA | 2 cut(s) | 11, 601 |
| TasI | AATT | 3 cut(s) | 350, 468, 565 |
| TatI | WGTACW | 1 cut(s) | 692 |
| TfiI | GAWTC | 5 cut(s) | 41, 53, 182, 222, 524 |
| Tru1I | TTAA | 3 cut(s) | 189, 563, 569 |
| Tru9I | TTAA | 3 cut(s) | 189, 563, 569 |
| TscAI | CASTG | 1 cut(s) | 493 |
| TseFI | GTSAC | 3 cut(s) | 281, 296, 704 |
| TseI | GCWGC | 3 cut(s) | 332, 335, 700 |
| Tsp45I | GTSAC | 3 cut(s) | 281, 296, 704 |
| TspDTI | ATGAA | 2 cut(s) | 33, 356 |
| TspRI | CASTG | 1 cut(s) | 493 |
| XapI | RAATTY | 1 cut(s) | 565 |
| XbaI | TCTAGA | 2 cut(s) | 70, 379 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 252 |
| XspI | CTAG | 5 cut(s) | 71, 380, 402, 462, 528 |
| ZrmI | AGTACT | 1 cut(s) | 694 |