Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011200

Physical Location & Seq

Genomic Coordinates Forward (+)

2324306 .. 2330507

Gene Structure 6202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG031600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGGACATACTCTTCGCTCAGATCCAAGCCGACCTCCGCTCCAGCGACGCCCTCCGCCAGTCCGGCGCCCTCCTCCAAGCCCTCCAGCAGTCCGCCGCCGGCCGCGACATCTCCGTCATCGCCAAGTCCGCCGTCGAAGAGATCGTCGCCTCCCCCGCCTCCGCCGTCTGCAAGAAGCTCGCCTTCGACCTCATCCGCTCCACCCGCCTCACCGCCGACCTCTGGGACACCGTCTGCACCGGCGTCCTCACCGATCTCGACTTCCCCGACCCTGACGTCAGCGCCGCCGCCGTCTCGATCCTCGCCGCCATCCCCTCCTACCGCCTCCCCAAGCTCATCGCCGACACCAAGAAGGAGATCAACAACTGCTTCGACTCGCCGTCCGATAACCTCCGGTTCGCGATCACCGAGACGATGGGGTGCATTCTCGCACGTGACGATCTCGTGACTCTGTGCGAGAACAATGTCAATCTGCTCGATAAGGTCTCCGGCTGGTGGGGCCGGATCGGCCAGAACATGCTCGACGGCTCCGACGCCGTTTCGAAGGTCGCGTTCGAGTCTGTGGGGCGGTTGTTTCAGGAGTTCGATACCAAAAGGATGAGCAGACTCGCCGGAGATAAGTTGATAGACAGTGAGAATTCGCTTGCGATTCGATCCAATTGGGTTTCTTCAATGGTGGACTTCGTCTGGAAGAAGCGGAGTGCTTTAATGGCGAGGTCGTTGGTTTTGCCGGTGGAGAGTTTCAGGGCCACGGTGTTTCCGATTGTGTATGCCGTTAAGGCTGTGGCCTCCGGCTCCGTCGAGGTCATAAGGAAGCTATCCAAGTCTTCTGGTAGTTCTAATGCGACTATTGTGGATAGTAATGCCGAGAGGTTCGTCGGAGTTTCGGATGTGGTGACGCATTTGGTGCCGTTTCTGGCCTCGTCTTTGGATCCAGCTTTGATTTTTGAGGTGGGGATTGACATGTTGTACTTGGCTGATGTTCCTGGTGGGAAGCCTGAGTGGGCTTCGCAATCGATTATTGCAATTCTCACACTTTGGGATAGGCAAGAGTTTGCTTCTGCTAGGGAAAGTATTGTTAGAGCTGTTGTTACCAACCTTCATCTTCTCGATCTTCATATGCAGGTTTCATTGTTTAAGAGGCTGCTTCTTATGGTGAGAAACTTGAGGGCAGAATCAGATCGCATGCATGCGTTAGCATGTATTTGTCGAACAGCGCTTTGTGTTGATCTATTTGCAAAGGAAAGTGTCCGAAGAGGCCAGAAACCTCTTGCTGGAACTGATATAGCCTCACTTTTTGAGGATGCAAGAATAAAAGATGATCTTAATAGTGTGACCAGCAAGACCTTATTTAGGGAGGAGTTGGTAGCATCATTGGTAGAGAGTTGCTTTCAGTTGTCTCTACCTTTGCCTGAACAAAAGAACTCAGGGATGGAGAGCAGAGTTATTGGAGCCTTGGCATATGGAACTGGTTATGGTGCACTAAATTGGACAGAGCCTGCTCTGGAAGTCGTGGAGGTTTGCAGACCATGTGTCAAATGGGATTGTGATGGCCGGACTTATGCAATTGATTGCTATTTGAAGTTACTTGTTAGGCTTTGCCATATCTACGATACAAGGGGAGGTGTAAAAAGAGTAAAAGACGGGGCTTCACAGGACCAAATTTTAAATGAGACAAGGTTGCAGAACTTGCAACGTGAACTTGTGAAAGGTCTACGTGAGGTGAATACCCCAAGAATATGTGCTCGCGTAATTTGGGCTATCTCAGAGCACATAGACTTAGAAGGGTTGGATCCGCTGCTGGCTGATGATCCTGAGGATCCACTGAACATTATTATTTTGAATATCCACAAGGTTTTGTTCGACATAGATTCATCTTCAGATTCGACAAATAGGCTTCTGGATGTTCAGGCAGTTTTATTATGTGCTCAGCGGTTGGGATCACGCAACTCTAGGGCTGGACAGATACTGACTAAAGAACTCGAAGAGTTCAGGAGCAGTAGTGTGGCTGATTCAGTAAACAAGCATCAGTGCCGTATGATATTGCAGAGACTTAAGTATGCTTCAAGCCATCCAGAACGCAGGTGGCCAGGAGTTACGGAAGCCAGAGGTGATTACCCATTCAGCCACCATAAACTAACTGTTCAGTTCTACGAAGTAGCTGCAGCTCAGGATAGAAAATTAGAAGGATTGGTTCATAATGCTATATTAGAGCTTTGGAGGCCAGAACCTAGTGAACTAACTCTTCTGTTGACAAAAGGAGTTGAGTCTACTTTACTCAAGGTTCCTCCTACTGCAACTACTTTGACCGGTAGCAGTGATCCCTGCTACATTGAAGCATATCATTTGGCAGATTCTAGTGATGGAAGGATATCTTTGCATTTGAAGGTCTTAAACTTAACTGAGCTTGAACTCAATCGGGTTGATATTCGAGTTGGGTTATCTGGTTCACTGTATTTTATGGATGGGTCTCCACAAGCAGTTCGGCAATTGCGTAACCTTGTTTCGCAGGTTTCTTTTCTTGCCCCTAAAATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

846

Amino Acids

93.56

Weight (kDa)

5.94

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01780 AT3G01780
fragaria_vesca	FvH4_5g15940
malus_domestica	MD06G1184100.v1.1 MD14G1190000.v1.1
prunus_persica	Prupe.5G183000_v2.0.a1
pyrus_communis	pycom06g16320 pycom06g16330 pycom14g15780
rosa_chinensis	RchiOBHm_Chr7g0180111
rosa_laevigata	RLG00000005292
rosa_multiflora	Rmu_sc0017616.1_g000007 Rmu_ssc0000119.1_g000034
rosa_roxburghii	Rroxscaffold_3G00273120
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7AG031100 Rh7BG031000 Rh7CG033000 Rh7DG031600
rosa_wichuraiana	Rw7G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2073
AasI	GACNNNNNNGTC	2 cut(s)	113, 275
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	3 cut(s)	1114, 2073, 2500
AccB1I	GGYRCC	2 cut(s)	65, 907
AccBSI	CCGCTC	2 cut(s)	39, 198
AccI	GTMKAC	2 cut(s)	1714, 2270
AccII	CGCG	4 cut(s)	105, 401, 551, 1749
AcoI	YGGCCR	4 cut(s)	100, 508, 1552, 2087
AcsI	RAATTY	2 cut(s)	637, 1662
AcuI	CTGAAG	1 cut(s)	1863
AcvI	CACGTG	1 cut(s)	434
AcyI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
AfaI	GTAC	1 cut(s)	971
AfeI	AGCGCT	1 cut(s)	1218
AfiI	CCNNNNNNNGG	4 cut(s)	222, 495, 1274, 1353
AflII	CTTAAG	1 cut(s)	2054
AflIII	ACRYGT	1 cut(s)	963
AgeI	ACCGGT	1 cut(s)	2309
AgsI	TTSAA	7 cut(s)	672, 1582, 1843, 2067, 2336, 2386, 2411
AhdI	GACNNNNNGTC	2 cut(s)	379, 1532
AjnI	CCWGG	2 cut(s)	985, 2089
AluBI	AGCT	9 cut(s)	178, 334, 817, 938, 1085, 2162, 2168, 2215, 2407
AluI	AGCT	9 cut(s)	178, 334, 817, 938, 1085, 2162, 2168, 2215, 2407
Alw21I	GWGCWC	4 cut(s)	1483, 1747, 1773, 1930
Alw26I	GTCTC	7 cut(s)	298, 404, 490, 1404, 1667, 2044, 2475
Alw44I	GTGCAC	1 cut(s)	1479
AlwNI	CAGNNNCTG	2 cut(s)	1499, 1969
Aor51HI	AGCGCT	1 cut(s)	1218
ApaLI	GTGCAC	1 cut(s)	1479
ApeKI	GCWGC	4 cut(s)	1144, 1798, 2162, 2165
ApoI	RAATTY	2 cut(s)	637, 1662
ArsI	GACNNNNNNTTYG	3 cut(s)	28, 129, 161
AsiGI	ACCGGT	1 cut(s)	2309
AspLEI	GCGC	3 cut(s)	68, 284, 1219
AspS9I	GGNCC	3 cut(s)	499, 747, 1657
AsuHPI	GGTGA	7 cut(s)	202, 241, 397, 907, 1168, 1735, 2123
AsuII	TTCGAA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	1657
AxyI	CCTNAGG	1 cut(s)	1815
BaeGI	GKGCMC	1 cut(s)	1483
BalI	TGGCCA	1 cut(s)	2089
BamHI	GGATCC	3 cut(s)	931, 1792, 1819
BanI	GGYRCC	2 cut(s)	65, 907
BauI	CACGAG	1 cut(s)	443
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	4 cut(s)	1483, 1747, 1773, 1930
BbvI	GCAGC	4 cut(s)	1131, 1785, 2149, 2177
BccI	CCATC	7 cut(s)	317, 409, 1426, 1544, 2079, 2357, 2459
BceAI	ACGGC	9 cut(s)	116, 149, 275, 364, 521, 541, 758, 895, 2019
BcgI	CGANNNNNNTGC	4 cut(s)	160, 194, 2144, 2178
BciT130I	CCWGG	2 cut(s)	987, 2091
BcoDI	GTCTC	7 cut(s)	298, 404, 490, 1404, 1667, 2044, 2475
BfaI	CTAG	4 cut(s)	1065, 1953, 2232, 2358
BfmI	CTRYAG	1 cut(s)	2163
BfoI	RGCGCY	3 cut(s)	69, 285, 1220
BfrI	CTTAAG	1 cut(s)	2054
BfuAI	ACCTGC	3 cut(s)	1114, 2073, 2500
BglI	GCCNNNNNGGC	3 cut(s)	63, 507, 779
BisI	GCNGC	9 cut(s)	96, 103, 285, 288, 306, 1145, 1799, 2163, 2166
BlpI	GCTNAGC	1 cut(s)	1929
BlsI	GCNGC	9 cut(s)	97, 104, 286, 289, 307, 1146, 1800, 2164, 2167
Bme1390I	CCNGG	2 cut(s)	987, 2091
Bme18I	GGWCC	1 cut(s)	1657
BmeRI	GACNNNNNGTC	2 cut(s)	379, 1532
BmgT120I	GGNCC	3 cut(s)	499, 747, 1657
BmrFI	CCNGG	2 cut(s)	987, 2091
BmsI	GCATC	3 cut(s)	1294, 1379, 2035
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	2 cut(s)	25, 68
Bpu10I	CCTNAGC	1 cut(s)	2169
Bpu1102I	GCTNAGC	1 cut(s)	1929
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	1186, 2264
Bsa29I	ATCGAT	1 cut(s)	1016
BsaAI	YACGTR	2 cut(s)	434, 1718
BsaHI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
BsaI	GGTCTC	2 cut(s)	490, 2475
BsaJI	CCNNGG	2 cut(s)	750, 1455
BsaWI	WCCGGW	2 cut(s)	393, 2309
BsaXI	ACNNNNNCTCC	4 cut(s)	23, 53, 1987, 2017
Bsc4I	CCNNNNNNNGG	4 cut(s)	222, 495, 1274, 1353
Bse118I	RCCGGY	4 cut(s)	98, 239, 730, 2309
Bse1I	ACTGG	2 cut(s)	58, 1474
Bse21I	CCTNAGG	1 cut(s)	1815
BseBI	CCWGG	2 cut(s)	987, 2091
BseCI	ATCGAT	1 cut(s)	1016
BseDI	CCNNGG	2 cut(s)	750, 1455
BseGI	GGATG	9 cut(s)	192, 309, 603, 895, 1309, 1437, 1909, 2071, 2470
BseLI	CCNNNNNNNGG	4 cut(s)	222, 495, 1274, 1353
BseMII	CTCAG	8 cut(s)	32, 990, 1440, 1779, 1806, 1943, 2183, 2394
BseNI	ACTGG	2 cut(s)	58, 1474
BseRI	GAGGAG	2 cut(s)	62, 1373
BseSI	GKGCMC	1 cut(s)	1483
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	4 cut(s)	1131, 1785, 2149, 2177
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	4 cut(s)	105, 401, 551, 1749
Bsh1285I	CGRYCG	1 cut(s)	103
BshNI	GGYRCC	2 cut(s)	65, 907
BshTI	ACCGGT	1 cut(s)	2309
BshVI	ATCGAT	1 cut(s)	1016
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	4 cut(s)	1483, 1747, 1773, 1930
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	4 cut(s)	222, 495, 1274, 1353
BsmAI	GTCTC	7 cut(s)	298, 404, 490, 1404, 1667, 2044, 2475
BsmBI	CGTCTC	2 cut(s)	298, 404
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	423
Bso31I	GGTCTC	2 cut(s)	490, 2475
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	4 cut(s)	1483, 1747, 1773, 1930
Bsp1720I	GCTNAGC	1 cut(s)	1929
Bsp68I	TCGCGA	1 cut(s)	401
BspCNI	CTCAG	8 cut(s)	31, 991, 1439, 1778, 1807, 1942, 2182, 2395
BspDI	ATCGAT	1 cut(s)	1016
BspFNI	CGCG	4 cut(s)	105, 401, 551, 1749
BspMAI	CTGCAG	1 cut(s)	2167
BspMI	ACCTGC	3 cut(s)	1114, 2073, 2500
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	2 cut(s)	65, 907
BspTI	CTTAAG	1 cut(s)	2054
BspTNI	GGTCTC	2 cut(s)	490, 2475
BsrBI	CCGCTC	2 cut(s)	39, 198
BsrFI	RCCGGY	4 cut(s)	98, 239, 730, 2309
BsrI	ACTGG	2 cut(s)	58, 1474
BssAI	RCCGGY	4 cut(s)	98, 239, 730, 2309
BssECI	CCNNGG	2 cut(s)	750, 1455
BssNI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	1455
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	987, 2091
Bst4CI	ACNGT	5 cut(s)	232, 632, 754, 2143, 2454
Bst6I	CTCTTC	5 cut(s)	17, 132, 1249, 1980, 2250
BstACI	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
BstAFI	CTTAAG	1 cut(s)	2054
BstAPI	GCANNNNNTGC	2 cut(s)	907, 1690
BstBAI	YACGTR	2 cut(s)	434, 1718
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	8 cut(s)	100, 180, 645, 1187, 1191, 1500, 1747, 1803
BstDEI	CTNAG	9 cut(s)	18, 999, 1426, 1765, 1780, 1815, 1929, 2169, 2403
BstDSI	CCRYGG	1 cut(s)	750
BstENI	CCTNNNNNAGG	1 cut(s)	1351
BstF5I	GGATG	9 cut(s)	192, 309, 603, 895, 1309, 1437, 1909, 2071, 2470
BstFNI	CGCG	4 cut(s)	105, 401, 551, 1749
BstH2I	RGCGCY	3 cut(s)	69, 285, 1220
BstHHI	GCGC	3 cut(s)	68, 284, 1219
BstMAI	GTCTC	7 cut(s)	298, 404, 490, 1404, 1667, 2044, 2475
BstMCI	CGRYCG	1 cut(s)	103
BstNI	CCWGG	2 cut(s)	987, 2091
BstNSI	RCATGY	5 cut(s)	520, 967, 1189, 1193, 1203
BstSCI	CCNGG	2 cut(s)	985, 2089
BstSFI	CTRYAG	1 cut(s)	2163
BstSLI	GKGCMC	1 cut(s)	1483
BstUI	CGCG	4 cut(s)	105, 401, 551, 1749
BstV1I	GCAGC	4 cut(s)	1131, 1785, 2149, 2177
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	4 cut(s)	21, 931, 1792, 1819
BstYI	RGATCY	4 cut(s)	21, 931, 1792, 1819
BstZI	CGGCCG	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	1016
Bsu36I	CCTNAGG	1 cut(s)	1815
BsuTUI	ATCGAT	1 cut(s)	1016
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	2 cut(s)	103, 322
BtsCI	GGATG	9 cut(s)	192, 309, 603, 895, 1309, 1437, 1909, 2071, 2470
BtsI	GCAGTG	1 cut(s)	2323
BtsIMutI	CAGTG	5 cut(s)	637, 1823, 2036, 2323, 2450
BtuMI	TCGCGA	1 cut(s)	401
BveI	ACCTGC	3 cut(s)	1114, 2073, 2500
Cac8I	GCNNGC	8 cut(s)	100, 180, 645, 1187, 1191, 1500, 1747, 1803
CaiI	CAGNNNCTG	2 cut(s)	1499, 1969
CfoI	GCGC	3 cut(s)	68, 284, 1219
Cfr10I	RCCGGY	4 cut(s)	98, 239, 730, 2309
Cfr13I	GGNCC	3 cut(s)	499, 747, 1657
ClaI	ATCGAT	1 cut(s)	1016
CseI	GACGC	4 cut(s)	56, 232, 542, 907
Csp6I	GTAC	1 cut(s)	970
CspAI	ACCGGT	1 cut(s)	2309
CviAII	CATG	6 cut(s)	517, 964, 1186, 1190, 1200, 1530
CviQI	GTAC	1 cut(s)	970
DdeI	CTNAG	9 cut(s)	18, 999, 1426, 1765, 1780, 1815, 1929, 2169, 2403
DinI	GGCGCC	1 cut(s)	67
DraI	TTTAAA	1 cut(s)	1668
DrdI	GACNNNNNNGTC	2 cut(s)	113, 275
DriI	GACNNNNNGTC	2 cut(s)	379, 1532
DseDI	GACNNNNNNGTC	2 cut(s)	113, 275
EaeI	YGGCCR	4 cut(s)	100, 508, 1552, 2087
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	5 cut(s)	17, 132, 1249, 1980, 2250
Eam1105I	GACNNNNNGTC	2 cut(s)	379, 1532
EarI	CTCTTC	5 cut(s)	17, 132, 1249, 1980, 2250
EciI	GGCGGA	4 cut(s)	44, 82, 118, 151
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	1455
Eco31I	GGTCTC	2 cut(s)	490, 2475
Eco32I	GATATC	1 cut(s)	2373
Eco47I	GGWCC	1 cut(s)	1657
Eco47III	AGCGCT	1 cut(s)	1218
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	1863
Eco72I	CACGTG	1 cut(s)	434
Eco81I	CCTNAGG	1 cut(s)	1815
EcoNI	CCTNNNNNAGG	1 cut(s)	1351
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	985, 2089
EcoRV	GATATC	1 cut(s)	2373
EcoT14I	CCWWGG	1 cut(s)	1455
EcoT22I	ATGCAT	2 cut(s)	1191, 2538
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	1455
Esp3I	CGTCTC	2 cut(s)	298, 404
FaeI	CATG	6 cut(s)	520, 967, 1189, 1193, 1203, 1533
FalI	AAGNNNNNCTT	6 cut(s)	167, 199, 1308, 1340, 2359, 2391
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	6 cut(s)	516, 963, 1185, 1189, 1199, 1529
FauI	CCCGC	2 cut(s)	163, 212
FauNDI	CATATG	2 cut(s)	1119, 1462
FblI	GTMKAC	2 cut(s)	1714, 2270
Fnu4HI	GCNGC	9 cut(s)	96, 103, 285, 288, 306, 1145, 1799, 2163, 2166
FokI	GGATG	9 cut(s)	179, 296, 610, 902, 1316, 1444, 1916, 2058, 2477
Fsp4HI	GCNGC	9 cut(s)	96, 103, 285, 288, 306, 1145, 1799, 2163, 2166
FspBI	CTAG	4 cut(s)	1065, 1953, 2232, 2358
GlaI	GCGC	3 cut(s)	67, 283, 1218
GluI	GCNGC	9 cut(s)	96, 103, 285, 288, 306, 1145, 1799, 2163, 2166
GsuI	CTGGAG	2 cut(s)	25, 68
HaeII	RGCGCY	3 cut(s)	69, 285, 1220
HgaI	GACGC	4 cut(s)	56, 232, 542, 907
HhaI	GCGC	3 cut(s)	68, 284, 1219
Hin1I	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
Hin1II	CATG	6 cut(s)	520, 967, 1189, 1193, 1203, 1533
Hin6I	GCGC	3 cut(s)	66, 282, 1217
HinP1I	GCGC	3 cut(s)	66, 282, 1217
HincII	GTYRAC	1 cut(s)	2253
HindII	GTYRAC	1 cut(s)	2253
HphI	GGTGA	7 cut(s)	202, 241, 397, 907, 1168, 1735, 2123
Hpy166II	GTNNAC	9 cut(s)	679, 1481, 1700, 1715, 2020, 2237, 2253, 2271, 2450
Hpy8I	GTNNAC	9 cut(s)	679, 1481, 1700, 1715, 2020, 2237, 2253, 2271, 2450
Hpy99I	CGWCG	7 cut(s)	50, 137, 149, 527, 536, 803, 881
HpyAV	CCTTC	8 cut(s)	193, 346, 538, 1109, 1778, 2180, 2361, 2380
HpyCH4III	ACNGT	5 cut(s)	232, 632, 754, 2143, 2454
HpyCH4IV	ACGT	4 cut(s)	276, 433, 1696, 1717
HpyF3I	CTNAG	9 cut(s)	18, 999, 1426, 1765, 1780, 1815, 1929, 2169, 2403
HpySE526I	ACGT	4 cut(s)	276, 433, 1696, 1717
Hsp92I	GRCGYC	5 cut(s)	48, 66, 243, 276, 534
Hsp92II	CATG	6 cut(s)	520, 967, 1189, 1193, 1203, 1533
HspAI	GCGC	3 cut(s)	66, 282, 1217
KasI	GGCGCC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
LmnI	GCTCC	6 cut(s)	44, 203, 533, 800, 1451, 1995
Lsp1109I	GCAGC	4 cut(s)	1131, 1785, 2149, 2177
LweI	GCATC	3 cut(s)	1294, 1379, 2035
MaeI	CTAG	4 cut(s)	1065, 1953, 2232, 2358
MaeII	ACGT	4 cut(s)	276, 433, 1696, 1717
MaeIII	GTNAC	8 cut(s)	434, 445, 895, 1090, 1333, 1584, 2095, 2495
MbiI	CCGCTC	2 cut(s)	39, 198
MfeI	CAATTG	3 cut(s)	658, 1566, 2489
MflI	RGATCY	4 cut(s)	21, 931, 1792, 1819
MhlI	GDGCHC	4 cut(s)	1483, 1747, 1773, 1930
MlsI	TGGCCA	1 cut(s)	2089
MluCI	AATT	9 cut(s)	637, 658, 1026, 1486, 1566, 1662, 1752, 2180, 2489
MluNI	TGGCCA	1 cut(s)	2089
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	5 cut(s)	368, 442, 566, 600, 2276
MmeI	TCCRAC	3 cut(s)	555, 859, 1770
Mox20I	TGGCCA	1 cut(s)	2089
Mph1103I	ATGCAT	2 cut(s)	1191, 2538
MroNI	GCCGGC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	2089
MseI	TTAA	9 cut(s)	707, 777, 1137, 1326, 1667, 2055, 2393, 2399, 2539
Msp20I	TGGCCA	1 cut(s)	2089
MspA1I	CMGCKG	2 cut(s)	1798, 1933
MspCI	CTTAAG	1 cut(s)	2054
MspR9I	CCNGG	2 cut(s)	987, 2091
MunI	CAATTG	3 cut(s)	658, 1566, 2489
Mva1269I	GAATGC	1 cut(s)	423
MvaI	CCWGG	2 cut(s)	987, 2091
MvnI	CGCG	4 cut(s)	105, 401, 551, 1749
NaeI	GCCGGC	1 cut(s)	100
NarI	GGCGCC	1 cut(s)	66
NdeI	CATATG	2 cut(s)	1119, 1462
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	6 cut(s)	520, 967, 1189, 1193, 1203, 1533
NmeAIII	GCCGAG	1 cut(s)	892
NmuCI	GTSAC	4 cut(s)	434, 445, 895, 1333
NruI	TCGCGA	1 cut(s)	401
NsiI	ATGCAT	2 cut(s)	1191, 2538
NspI	RCATGY	5 cut(s)	520, 967, 1189, 1193, 1203
NspV	TTCGAA	1 cut(s)	542
PaeI	GCATGC	2 cut(s)	1189, 1193
PaqCI	CACCTGC	1 cut(s)	2073
PciI	ACATGT	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	8 cut(s)	141, 264, 405, 435, 528, 548, 758, 2491
PctI	GAATGC	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	100
PfeI	GAWTC	6 cut(s)	649, 1175, 1871, 1883, 2012, 2354
PflFI	GACNNNGTC	2 cut(s)	230, 683
PinAI	ACCGGT	1 cut(s)	2309
PkrI	GCNGC	9 cut(s)	97, 104, 286, 289, 307, 1146, 1800, 2164, 2167
PleI	GAGTC	5 cut(s)	368, 442, 565, 600, 2275
PluTI	GGCGCC	1 cut(s)	69
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
PpsI	GAGTC	5 cut(s)	368, 442, 565, 600, 2275
Ppu21I	YACGTR	2 cut(s)	434, 1718
PscI	ACATGT	1 cut(s)	963
Psp6I	CCWGG	2 cut(s)	985, 2089
PspCI	CACGTG	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	985, 2089
PspPI	GGNCC	3 cut(s)	499, 747, 1657
PstI	CTGCAG	1 cut(s)	2167
PstNI	CAGNNNCTG	2 cut(s)	1499, 1969
PsuI	RGATCY	4 cut(s)	21, 931, 1792, 1819
PsyI	GACNNNGTC	2 cut(s)	230, 683
RruI	TCGCGA	1 cut(s)	401
RsaI	GTAC	1 cut(s)	971
RsaNI	GTAC	1 cut(s)	970
SaqAI	TTAA	9 cut(s)	707, 777, 1137, 1326, 1667, 2055, 2393, 2399, 2539
SatI	GCNGC	9 cut(s)	96, 103, 285, 288, 306, 1145, 1799, 2163, 2166
Sau96I	GGNCC	3 cut(s)	499, 747, 1657
SchI	GAGTC	5 cut(s)	368, 442, 566, 600, 2276
ScrFI	CCNGG	2 cut(s)	987, 2091
SduI	GDGCHC	4 cut(s)	1483, 1747, 1773, 1930
SfaNI	GCATC	3 cut(s)	1294, 1379, 2035
SfcI	CTRYAG	1 cut(s)	2163
SfiI	GGCCNNNNNGGCC	1 cut(s)	507
SfoI	GGCGCC	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	542
SgrAI	CRCCGGYG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	1657
SmlI	CTYRAG	3 cut(s)	1165, 2054, 2279
SmoI	CTYRAG	3 cut(s)	1165, 2054, 2279
SphI	GCATGC	2 cut(s)	1189, 1193
Sse9I	AATT	9 cut(s)	637, 658, 1026, 1486, 1566, 1662, 1752, 2180, 2489
SspDI	GGCGCC	1 cut(s)	65
SspMI	CTAG	4 cut(s)	1065, 1953, 2232, 2358
StyD4I	CCNGG	2 cut(s)	985, 2089
StyI	CCWWGG	1 cut(s)	1455
TaaI	ACNGT	5 cut(s)	232, 632, 754, 2143, 2454
TaiI	ACGT	4 cut(s)	279, 436, 1699, 1720
TasI	AATT	9 cut(s)	637, 658, 1026, 1486, 1566, 1662, 1752, 2180, 2489
TatI	WGTACW	1 cut(s)	969
TauI	GCSGC	5 cut(s)	98, 105, 287, 290, 308
TfiI	GAWTC	6 cut(s)	649, 1175, 1871, 1883, 2012, 2354
Tru1I	TTAA	9 cut(s)	707, 777, 1137, 1326, 1667, 2055, 2393, 2399, 2539
Tru9I	TTAA	9 cut(s)	707, 777, 1137, 1326, 1667, 2055, 2393, 2399, 2539
TscAI	CASTG	5 cut(s)	637, 1830, 2036, 2323, 2457
TseFI	GTSAC	4 cut(s)	434, 445, 895, 1333
TseI	GCWGC	4 cut(s)	1144, 1798, 2162, 2165
Tsp45I	GTSAC	4 cut(s)	434, 445, 895, 1333
TspDTI	ATGAA	5 cut(s)	1091, 1106, 1119, 1863, 2186
TspGWI	ACGGA	3 cut(s)	103, 787, 2114
TspRI	CASTG	5 cut(s)	637, 1830, 2036, 2323, 2457
Tth111I	GACNNNGTC	2 cut(s)	230, 683
Vha464I	CTTAAG	1 cut(s)	2054
VneI	GTGCAC	1 cut(s)	1479
VpaK11BI	GGWCC	1 cut(s)	1657
XagI	CCTNNNNNAGG	1 cut(s)	1351
XapI	RAATTY	2 cut(s)	637, 1662
XceI	RCATGY	5 cut(s)	520, 967, 1189, 1193, 1203
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1536, 2082
XmiI	GTMKAC	2 cut(s)	1714, 2270
XspI	CTAG	4 cut(s)	1065, 1953, 2232, 2358
ZraI	GACGTC	1 cut(s)	277
Zsp2I	ATGCAT	2 cut(s)	1191, 2538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.