Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017616.1

Orthogroup ID

OG0011200

Physical Location & Seq

Genomic Coordinates Forward (+)

29820 .. 35980

Gene Structure 6161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017616.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2790 bp

atgagccatgacatgttgattagtagactaattaatattattgagatcatatattcaaatctcattagcttcaagatgattcgggtcataaggaagctatccaagtcttctggtagttctaatgcgactattgtggatagtaatgccgagaggttcgtcggagtttcggatgtggtgacgcatttggtgccgtttctggcctcgtctttggatccagctttgatttttgaggtggggattgacatgttgtacttggctgatgttcctggtgggaagcctgagtgggcttcgcaatcgattattgcaattctcacactttgggataggcaagagtttgcttctgctagggaaagtattgttagagctgttgttaccaaccttcatcttctcgatcttcatatgcaggtttcattgtttaagaggctgcttcttatggtgagaaacttgagggcagaatcagatcgcatgcatgcgttagcatgtatttgtcgaacagcgctttgtgttgatctatttgcaaaggaaagtgtccgaagaggccagaaacctcttgctggaactgatatagcctcactttttgaggatgcaagaataaaagatgatcttaatagtgtgaccagcaagaccttatttagggaggagttagtagcatcattggtagagagttgctttcagttgtctctacctttgcctgaacaaaagaactcagggatggagagcagagttattggagccttggcatatggaactggttatggtgcactaaattggacagagcctgctctggaagtcgtggaggtttgcagaccatgtgtcaaatgggattgtgatggccggacttatgcaattgattgctatttgaagttacttgttaggctttgccatatctacgatacaaggggaggtgtaaaaagagtaaaagacggggcttcacaggaccaaattttaaatgagacaaggttgcagaacttgcaacgtgaacttgtgaaaggtctacgtgaggtgaataccccaagaatatgtgctcgcgtaatttgggctatctcagagcacatagacttagaagggttggatccgctgctggctgatgatcctgaggatccactgaacattattattttgaatatccacaaggttttgttcgacatagattcatcttcagattcgacaaataggcttctggatgttcaggcagttttattatgtgctcagcggttgggatcacgcaacgctagggctggacagatactgactaaagaactcgaagagttcaggagcagtagtatggctgattcagtaaacaagcatcagtgccgtatgatattgcagagactcaagtatgcttcaagccatccagaacgcaggtggccaggagttacggaagctagaggtgattacccattcagccaccataaactaactgttcagttctacgaagtagctgcagctcaggatagaaaattagaaggattggttcataatgctatattagagctttggaggccagaacctagtgaactaactcttctgttgacaaaaggagttgagtctactttactcaaggttcctcctactgcaactactttgaccggtagcagtgatccctgctacattgaagcatatcatttggcagattctagtgatggaaggatatctttgcatttgaaggtcttaaacttaactgagcttgaactcaatcgggttgatattcgagttgggttatctggttcactgtattttatggatgggtctccacaagcagttcggcaattgcgtaaccttgtttcgcaggatccagtactctgcagtgtaactgtgggtgtctcccattttgaaagatgcgccctttgggttcaagtcttatactaccccttctatggaagtggtgcagcttcagattatgaaggtgactactctgaagaagatccacaaatcatgagacagaagagaagtttaaggcctgaactgggagagcctgtcattttgaggtgtcagccatacaagattccgttgaccgagctactaaccccacataaaatctcaccagttgaatttttccggctgtggcccagtttaccagccattgttgagtacactggtacatatacctatgaaggaagtggcttcaaggctactgctgctcagcagtatggagcatctcctttcctaagtgggctgaaatccttgtcatcaaaaccattccacagagtttgttcacatgttattcggacagtagcaggatttcagctttgttttgccgcaaaaacttggtatggtggcttcttgggcatgatgatctttggagctagtgaagtgagccggaatgtcgaccttggtgatgagactacgaccatgatttgcaaatttgttgttcgagcttctgatgcatcaattacgaaggagattggatcagatctacagggctggttggatgatctcactgatgggggtgttgagtacatgcctgaagatgaagtgaaggtggctgctgctgagaggcttaggatctcaatggaacgaatagcattgctaaaggcagccgaacctaaaaagactcccaaatctgatgacgaggacgaagaagaagaagacagtgatgatgaagatgactttatgacaaagaaaaagaaggaaaagaaaaaagatggtgaggaggaagatggcaagaaaaagggacctacaaccttgtccaaattgactgcagaggaggctgaacaccgtgctcttcaacaagcagtgctccaagagtggtatacattgtgtaaagatagagctgcaaaagtaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

929

Amino Acids

103.96

Weight (kDa)

5.61

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01780 AT3G01780
fragaria_vesca	FvH4_5g15940
malus_domestica	MD06G1184100.v1.1 MD14G1190000.v1.1
prunus_persica	Prupe.5G183000_v2.0.a1
pyrus_communis	pycom06g16320 pycom06g16330 pycom14g15780
rosa_chinensis	RchiOBHm_Chr7g0180111
rosa_laevigata	RLG00000005292
rosa_multiflora	Rmu_sc0017616.1_g000007 Rmu_ssc0000119.1_g000034
rosa_roxburghii	Rroxscaffold_3G00273120
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7AG031100 Rh7BG031000 Rh7CG033000 Rh7DG031600
rosa_wichuraiana	Rw7G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1353
Acc36I	ACCTGC	2 cut(s)	394, 1353
AccB1I	GGYRCC	1 cut(s)	187
AccI	GTMKAC	5 cut(s)	25, 994, 1550, 2328, 2753
AccII	CGCG	1 cut(s)	1029
AciI	CCGC	3 cut(s)	1076, 1213, 2259
AcoI	YGGCCR	2 cut(s)	832, 1367
AcsI	RAATTY	3 cut(s)	942, 2051, 2363
AcuI	CTGAAG	4 cut(s)	1143, 1878, 1938, 2487
AfaI	GTAC	5 cut(s)	251, 1800, 2093, 2101, 2459
AfeI	AGCGCT	1 cut(s)	498
AfiI	CCNNNNNNNGG	4 cut(s)	554, 633, 1877, 1967
AflIII	ACRYGT	3 cut(s)	12, 243, 2218
AgeI	ACCGGT	1 cut(s)	1589
AhdI	GACNNNNNGTC	1 cut(s)	812
AjnI	CCWGG	2 cut(s)	265, 1369
Alw21I	GWGCWC	6 cut(s)	763, 1027, 1053, 1210, 2725, 2742
Alw26I	GTCTC	7 cut(s)	684, 947, 1324, 1755, 1828, 1933, 2336
Alw44I	GTGCAC	1 cut(s)	759
AlwNI	CAGNNNCTG	2 cut(s)	779, 1249
Aor51HI	AGCGCT	1 cut(s)	498
AoxI	GGCC	7 cut(s)	198, 538, 832, 1367, 1502, 1958, 2066
ApaLI	GTGCAC	1 cut(s)	759
ApoI	RAATTY	3 cut(s)	942, 2051, 2363
AseI	ATTAAT	1 cut(s)	33
AsiGI	ACCGGT	1 cut(s)	1589
AspLEI	GCGC	2 cut(s)	499, 1844
AspS9I	GGNCC	3 cut(s)	937, 2067, 2675
AsuHPI	GGTGA	8 cut(s)	187, 448, 1015, 1403, 1919, 2034, 2348, 2660
AvaII	GGWCC	2 cut(s)	937, 2675
AxyI	CCTNAGG	1 cut(s)	1095
BaeGI	GKGCMC	1 cut(s)	763
BalI	TGGCCA	1 cut(s)	1369
BamHI	GGATCC	4 cut(s)	211, 1072, 1099, 1792
BanI	GGYRCC	1 cut(s)	187
BarI	GAAGNNNNNNTAC	2 cut(s)	2264, 2296
BbsI	GAAGAC	2 cut(s)	99, 2595
Bbv12I	GWGCWC	6 cut(s)	763, 1027, 1053, 1210, 2725, 2742
BccI	CCATC	8 cut(s)	706, 824, 1359, 1637, 1739, 2438, 2639, 2654
BceAI	ACGGC	2 cut(s)	175, 1299
BcgI	CGANNNNNNTGC	2 cut(s)	1424, 1458
BciT130I	CCWGG	2 cut(s)	267, 1371
BcoDI	GTCTC	7 cut(s)	684, 947, 1324, 1755, 1828, 1933, 2336
BfaI	CTAG	6 cut(s)	345, 1233, 1386, 1512, 1638, 2307
BfmI	CTRYAG	4 cut(s)	1443, 1804, 2417, 2700
BfoI	RGCGCY	1 cut(s)	500
BfuAI	ACCTGC	2 cut(s)	394, 1353
BglII	AGATCT	1 cut(s)	2413
BlpI	GCTNAGC	2 cut(s)	1209, 2142
BmcAI	AGTACT	1 cut(s)	1800
Bme1390I	CCNGG	2 cut(s)	267, 1371
Bme18I	GGWCC	2 cut(s)	937, 2675
BmeRI	GACNNNNNGTC	1 cut(s)	812
BmgT120I	GGNCC	3 cut(s)	937, 2067, 2675
BmiI	GGNNCC	8 cut(s)	189, 213, 733, 1074, 1101, 1566, 1794, 2676
BmrFI	CCNGG	2 cut(s)	267, 1371
BmrI	ACTGGG	2 cut(s)	1976, 2064
BmsI	GCATC	7 cut(s)	574, 659, 1315, 1829, 2165, 2374, 2396
BmuI	ACTGGG	2 cut(s)	1976, 2064
BpiI	GAAGAC	2 cut(s)	99, 2595
Bpu10I	CCTNAGC	2 cut(s)	1449, 2501
Bpu1102I	GCTNAGC	2 cut(s)	1209, 2142
BpuEI	CTTGAG	3 cut(s)	466, 1319, 1544
Bsa29I	ATCGAT	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	1755
BsaJI	CCNNGG	2 cut(s)	735, 2332
BsaWI	WCCGGW	1 cut(s)	1589
BsaXI	ACNNNNNCTCC	4 cut(s)	1267, 1297, 1962, 1992
Bsc4I	CCNNNNNNNGG	4 cut(s)	554, 633, 1877, 1967
Bse118I	RCCGGY	1 cut(s)	1589
Bse1I	ACTGG	6 cut(s)	754, 1796, 1971, 2045, 2070, 2101
Bse21I	CCTNAGG	1 cut(s)	1095
Bse3DI	GCAATG	1 cut(s)	2525
BseBI	CCWGG	2 cut(s)	267, 1371
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	735, 2332
BseGI	GGATG	7 cut(s)	175, 589, 717, 1189, 1351, 1750, 2437
BseLI	CCNNNNNNNGG	4 cut(s)	554, 633, 1877, 1967
BseMI	GCAATG	1 cut(s)	2525
BseMII	CTCAG	9 cut(s)	270, 720, 1059, 1086, 1223, 1463, 1674, 2156, 2484
BseNI	ACTGG	6 cut(s)	754, 1796, 1971, 2045, 2070, 2101
BseRI	GAGGAG	3 cut(s)	653, 2666, 2720
BseSI	GKGCMC	1 cut(s)	763
BsgI	GTGCAG	1 cut(s)	1908
Bsh1236I	CGCG	1 cut(s)	1029
BshFI	GGCC	7 cut(s)	200, 540, 834, 1369, 1504, 1960, 2068
BshNI	GGYRCC	1 cut(s)	187
BshTI	ACCGGT	1 cut(s)	1589
BshVI	ATCGAT	1 cut(s)	296
BsiHKAI	GWGCWC	6 cut(s)	763, 1027, 1053, 1210, 2725, 2742
BsiSI	CCGG	4 cut(s)	835, 1590, 2059, 2320
BslFI	GGGAC	1 cut(s)	2688
BslI	CCNNNNNNNGG	4 cut(s)	554, 633, 1877, 1967
BsmAI	GTCTC	7 cut(s)	684, 947, 1324, 1755, 1828, 1933, 2336
BsmFI	GGGAC	1 cut(s)	2688
BsnI	GGCC	7 cut(s)	200, 540, 834, 1369, 1504, 1960, 2068
Bso31I	GGTCTC	1 cut(s)	1755
Bsp1286I	GDGCHC	6 cut(s)	763, 1027, 1053, 1210, 2725, 2742
Bsp1720I	GCTNAGC	2 cut(s)	1209, 2142
BspACI	CCGC	3 cut(s)	1076, 1213, 2259
BspANI	GGCC	7 cut(s)	200, 540, 834, 1369, 1504, 1960, 2068
BspCNI	CTCAG	9 cut(s)	271, 719, 1058, 1087, 1222, 1462, 1675, 2155, 2485
BspDI	ATCGAT	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	1029
BspHI	TCATGA	1 cut(s)	1935
BspLI	GGNNCC	8 cut(s)	189, 213, 733, 1074, 1101, 1566, 1794, 2676
BspMAI	CTGCAG	3 cut(s)	1447, 1808, 2704
BspMI	ACCTGC	2 cut(s)	394, 1353
BspQI	GCTCTTC	1 cut(s)	2730
BspT107I	GGYRCC	1 cut(s)	187
BspTNI	GGTCTC	1 cut(s)	1755
BsrDI	GCAATG	1 cut(s)	2525
BsrFI	RCCGGY	1 cut(s)	1589
BsrI	ACTGG	6 cut(s)	754, 1796, 1971, 2045, 2070, 2101
BssAI	RCCGGY	1 cut(s)	1589
BssECI	CCNNGG	2 cut(s)	735, 2332
BssNAI	GTATAC	1 cut(s)	2754
BssT1I	CCWWGG	2 cut(s)	735, 2332
Bst1107I	GTATAC	1 cut(s)	2754
Bst2UI	CCWGG	2 cut(s)	267, 1371
Bst4CI	ACNGT	6 cut(s)	1423, 1734, 1816, 2233, 2594, 2720
Bst6I	CTCTTC	5 cut(s)	529, 1260, 1530, 1940, 2730
BstAPI	GCANNNNNTGC	2 cut(s)	187, 970
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	5 cut(s)	467, 471, 780, 1027, 1083
BstENI	CCTNNNNNAGG	1 cut(s)	631
BstF5I	GGATG	7 cut(s)	175, 589, 717, 1189, 1351, 1750, 2437
BstFNI	CGCG	1 cut(s)	1029
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	2 cut(s)	499, 1844
BstMAI	GTCTC	7 cut(s)	684, 947, 1324, 1755, 1828, 1933, 2336
BstMWI	GCNNNNNNNGC	7 cut(s)	187, 970, 1501, 2138, 2286, 2384, 2708
BstNI	CCWGG	2 cut(s)	267, 1371
BstNSI	RCATGY	7 cut(s)	16, 247, 469, 473, 483, 2222, 2464
BstSCI	CCNGG	2 cut(s)	265, 1369
BstSFI	CTRYAG	4 cut(s)	1443, 1804, 2417, 2700
BstSLI	GKGCMC	1 cut(s)	763
BstUI	CGCG	1 cut(s)	1029
BstV2I	GAAGAC	2 cut(s)	99, 2595
BstX2I	RGATCY	7 cut(s)	211, 1072, 1099, 1792, 1924, 2413, 2505
BstYI	RGATCY	7 cut(s)	211, 1072, 1099, 1792, 1924, 2413, 2505
BstZ17I	GTATAC	1 cut(s)	2754
Bsu15I	ATCGAT	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	1095
BsuRI	GGCC	7 cut(s)	200, 540, 834, 1369, 1504, 1960, 2068
BsuTUI	ATCGAT	1 cut(s)	296
BtsCI	GGATG	7 cut(s)	175, 589, 717, 1189, 1351, 1750, 2437
BtsI	GCAGTG	3 cut(s)	1603, 1813, 2742
BtsIMutI	CAGTG	9 cut(s)	1103, 1316, 1603, 1730, 1813, 2094, 2439, 2599, 2742
BveI	ACCTGC	2 cut(s)	394, 1353
Cac8I	GCNNGC	5 cut(s)	467, 471, 780, 1027, 1083
CaiI	CAGNNNCTG	2 cut(s)	779, 1249
CciI	TCATGA	1 cut(s)	1935
CfoI	GCGC	2 cut(s)	499, 1844
Cfr10I	RCCGGY	1 cut(s)	1589
Cfr13I	GGNCC	3 cut(s)	937, 2067, 2675
ClaI	ATCGAT	1 cut(s)	296
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	5 cut(s)	250, 1799, 2092, 2100, 2458
CspAI	ACCGGT	1 cut(s)	1589
CspCI	CAANNNNNGTGG	2 cut(s)	2192, 2227
CviQI	GTAC	5 cut(s)	250, 1799, 2092, 2100, 2458
DraI	TTTAAA	1 cut(s)	948
DriI	GACNNNNNGTC	1 cut(s)	812
EaeI	YGGCCR	2 cut(s)	832, 1367
Eam1104I	CTCTTC	5 cut(s)	529, 1260, 1530, 1940, 2730
Eam1105I	GACNNNNNGTC	1 cut(s)	812
EarI	CTCTTC	5 cut(s)	529, 1260, 1530, 1940, 2730
Eco130I	CCWWGG	2 cut(s)	735, 2332
Eco147I	AGGCCT	1 cut(s)	1960
Eco31I	GGTCTC	1 cut(s)	1755
Eco32I	GATATC	1 cut(s)	1653
Eco47I	GGWCC	2 cut(s)	937, 2675
Eco47III	AGCGCT	1 cut(s)	498
Eco57I	CTGAAG	4 cut(s)	1143, 1878, 1938, 2487
Eco81I	CCTNAGG	1 cut(s)	1095
EcoNI	CCTNNNNNAGG	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	2675
EcoRII	CCWGG	2 cut(s)	265, 1369
EcoRV	GATATC	1 cut(s)	1653
EcoT14I	CCWWGG	2 cut(s)	735, 2332
EcoT22I	ATGCAT	2 cut(s)	471, 2389
ErhI	CCWWGG	2 cut(s)	735, 2332
FalI	AAGNNNNNCTT	4 cut(s)	588, 620, 1639, 1671
FaqI	GGGAC	1 cut(s)	2688
FauNDI	CATATG	2 cut(s)	399, 742
FblI	GTMKAC	5 cut(s)	25, 994, 1550, 2328, 2753
FokI	GGATG	7 cut(s)	182, 596, 724, 1196, 1338, 1757, 2444
FspBI	CTAG	6 cut(s)	345, 1233, 1386, 1512, 1638, 2307
GlaI	GCGC	2 cut(s)	498, 1843
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	7 cut(s)	200, 540, 834, 1369, 1504, 1960, 2068
HapII	CCGG	4 cut(s)	835, 1590, 2059, 2320
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	499, 1844
Hin6I	GCGC	2 cut(s)	497, 1842
HinP1I	GCGC	2 cut(s)	497, 1842
HincII	GTYRAC	3 cut(s)	1533, 2013, 2329
HindII	GTYRAC	3 cut(s)	1533, 2013, 2329
HpaII	CCGG	4 cut(s)	835, 1590, 2059, 2320
HphI	GGTGA	8 cut(s)	187, 448, 1015, 1403, 1919, 2034, 2348, 2660
Hpy188III	TCNNGA	9 cut(s)	73, 389, 785, 1094, 1181, 1273, 1355, 1451, 1936
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	6 cut(s)	1423, 1734, 1816, 2233, 2594, 2720
HpyCH4IV	ACGT	2 cut(s)	976, 997
HpyF10VI	GCNNNNNNNGC	7 cut(s)	187, 970, 1501, 2138, 2286, 2384, 2708
HpySE526I	ACGT	2 cut(s)	976, 997
HspAI	GCGC	2 cut(s)	497, 1842
LguI	GCTCTTC	1 cut(s)	2730
LmnI	GCTCC	5 cut(s)	731, 1275, 2153, 2303, 2745
LweI	GCATC	7 cut(s)	574, 659, 1315, 1829, 2165, 2374, 2396
MaeI	CTAG	6 cut(s)	345, 1233, 1386, 1512, 1638, 2307
MaeII	ACGT	2 cut(s)	976, 997
MaeIII	GTNAC	8 cut(s)	175, 370, 613, 864, 1375, 1775, 1810, 1907
MfeI	CAATTG	2 cut(s)	846, 1769
MflI	RGATCY	7 cut(s)	211, 1072, 1099, 1792, 1924, 2413, 2505
MhlI	GDGCHC	6 cut(s)	763, 1027, 1053, 1210, 2725, 2742
MlsI	TGGCCA	1 cut(s)	1369
MluNI	TGGCCA	1 cut(s)	1369
MlyI	GAGTC	3 cut(s)	1326, 1556, 2548
MmeI	TCCRAC	3 cut(s)	139, 1050, 2409
Mox20I	TGGCCA	1 cut(s)	1369
Mph1103I	ATGCAT	2 cut(s)	471, 2389
MscI	TGGCCA	1 cut(s)	1369
MseI	TTAA	7 cut(s)	33, 417, 606, 947, 1673, 1679, 1955
Msp20I	TGGCCA	1 cut(s)	1369
MspA1I	CMGCKG	2 cut(s)	1078, 1213
MspI	CCGG	4 cut(s)	835, 1590, 2059, 2320
MspR9I	CCNGG	2 cut(s)	267, 1371
MunI	CAATTG	2 cut(s)	846, 1769
MvaI	CCWGG	2 cut(s)	267, 1371
MvnI	CGCG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	7 cut(s)	187, 970, 1501, 2138, 2286, 2384, 2708
NdeI	CATATG	2 cut(s)	399, 742
NlaIV	GGNNCC	8 cut(s)	189, 213, 733, 1074, 1101, 1566, 1794, 2676
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	3 cut(s)	175, 613, 1907
NsiI	ATGCAT	2 cut(s)	471, 2389
NspI	RCATGY	7 cut(s)	16, 247, 469, 473, 483, 2222, 2464
PaeI	GCATGC	2 cut(s)	469, 473
PagI	TCATGA	1 cut(s)	1935
PaqCI	CACCTGC	1 cut(s)	1353
PceI	AGGCCT	1 cut(s)	1960
PciI	ACATGT	3 cut(s)	12, 243, 2218
PciSI	GCTCTTC	1 cut(s)	2730
PcsI	WCGNNNNNNNCGW	1 cut(s)	1771
PfeI	GAWTC	7 cut(s)	79, 455, 1151, 1163, 1292, 1634, 2005
PinAI	ACCGGT	1 cut(s)	1589
PleI	GAGTC	3 cut(s)	1326, 1555, 2548
PpsI	GAGTC	3 cut(s)	1326, 1555, 2548
Ppu21I	YACGTR	1 cut(s)	998
PpuMI	RGGWCCY	1 cut(s)	2675
PscI	ACATGT	3 cut(s)	12, 243, 2218
PshBI	ATTAAT	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	2675
Psp6I	CCWGG	2 cut(s)	265, 1369
PspGI	CCWGG	2 cut(s)	265, 1369
PspN4I	GGNNCC	8 cut(s)	189, 213, 733, 1074, 1101, 1566, 1794, 2676
PspPI	GGNCC	3 cut(s)	937, 2067, 2675
PspPPI	RGGWCCY	1 cut(s)	2675
PstI	CTGCAG	3 cut(s)	1447, 1808, 2704
PstNI	CAGNNNCTG	2 cut(s)	779, 1249
PsuI	RGATCY	7 cut(s)	211, 1072, 1099, 1792, 1924, 2413, 2505
RsaI	GTAC	5 cut(s)	251, 1800, 2093, 2101, 2459
RsaNI	GTAC	5 cut(s)	250, 1799, 2092, 2100, 2458
SalI	GTCGAC	1 cut(s)	2327
SapI	GCTCTTC	1 cut(s)	2730
SaqAI	TTAA	7 cut(s)	33, 417, 606, 947, 1673, 1679, 1955
Sau96I	GGNCC	3 cut(s)	937, 2067, 2675
ScaI	AGTACT	1 cut(s)	1800
SchI	GAGTC	3 cut(s)	1326, 1556, 2548
ScrFI	CCNGG	2 cut(s)	267, 1371
SduI	GDGCHC	6 cut(s)	763, 1027, 1053, 1210, 2725, 2742
SfaNI	GCATC	7 cut(s)	574, 659, 1315, 1829, 2165, 2374, 2396
SfcI	CTRYAG	4 cut(s)	1443, 1804, 2417, 2700
SinI	GGWCC	2 cut(s)	937, 2675
SmlI	CTYRAG	3 cut(s)	445, 1334, 1559
SmoI	CTYRAG	3 cut(s)	445, 1334, 1559
SphI	GCATGC	2 cut(s)	469, 473
SseBI	AGGCCT	1 cut(s)	1960
SsiI	CCGC	3 cut(s)	1076, 1213, 2259
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	6 cut(s)	345, 1233, 1386, 1512, 1638, 2307
StuI	AGGCCT	1 cut(s)	1960
StyD4I	CCNGG	2 cut(s)	265, 1369
StyI	CCWWGG	2 cut(s)	735, 2332
TaaI	ACNGT	6 cut(s)	1423, 1734, 1816, 2233, 2594, 2720
TaiI	ACGT	2 cut(s)	979, 1000
TaqI	TCGA	9 cut(s)	296, 390, 490, 1143, 1166, 1263, 1711, 2328, 2374
TaqII	GACCGA	1 cut(s)	2030
TatI	WGTACW	4 cut(s)	249, 1798, 2091, 2457
TauI	GCSGC	1 cut(s)	2261
TfiI	GAWTC	7 cut(s)	79, 455, 1151, 1163, 1292, 1634, 2005
Tru1I	TTAA	7 cut(s)	33, 417, 606, 947, 1673, 1679, 1955
Tru9I	TTAA	7 cut(s)	33, 417, 606, 947, 1673, 1679, 1955
TscAI	CASTG	9 cut(s)	1110, 1316, 1603, 1737, 1813, 2101, 2446, 2599, 2742
TseFI	GTSAC	3 cut(s)	175, 613, 1907
Tsp45I	GTSAC	3 cut(s)	175, 613, 1907
TspDTI	ATGAA	9 cut(s)	371, 386, 399, 1143, 1466, 1917, 2127, 2487, 2616
TspGWI	ACGGA	2 cut(s)	1394, 1998
TspRI	CASTG	9 cut(s)	1110, 1316, 1603, 1737, 1813, 2101, 2446, 2599, 2742
VneI	GTGCAC	1 cut(s)	759
VpaK11BI	GGWCC	2 cut(s)	937, 2675
VspI	ATTAAT	1 cut(s)	33
XagI	CCTNNNNNAGG	1 cut(s)	631
XapI	RAATTY	3 cut(s)	942, 2051, 2363
XceI	RCATGY	7 cut(s)	16, 247, 469, 473, 483, 2222, 2464
XcmI	CCANNNNNNNNNTGG	2 cut(s)	816, 1362
XmiI	GTMKAC	5 cut(s)	25, 994, 1550, 2328, 2753
XspI	CTAG	6 cut(s)	345, 1233, 1386, 1512, 1638, 2307
ZrmI	AGTACT	1 cut(s)	1800
Zsp2I	ATGCAT	2 cut(s)	471, 2389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.