Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011200

Physical Location & Seq

Genomic Coordinates Forward (+)

20636477 .. 20638287

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16320.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCAGGTTTCGCTGTTTAAGAGGTTGCTTCTTATGGTGAGAAACTTGAGGGCAGAATCAGATCGTATGCATGCGTTAGCTTGCATTTGTCGAACAGCTCTTTGTGTTGATCTCTTCGCAAAGGAGAGCGTAAGAAGAGGCCAGAAACCTCTTGCCGGAACTGATATAGCTTCACTTTTTGAGGACGCAAGAATCAAAGACGATCTTAATAGTGTGACAAGCAAGACCTTATTTAGGGAGGAGTTGGTGGCATCATTAGTTGAAAGTTGTTTTCAGTTGTCTCTGCCTTTACCTGAACAAAAGAACACAGGGATGGAGAGCAGGGTTATTGGAGCCTTGGCATATGGAACTGGTTATGGTGCACTAAATTGGACAGAGCCTGCTTTGGAAGTGGTGGAGGTTTGCCGGCCTTGTGTTAAATGGGACTGTGAGGGCCGGACCTATGCAATTGATTGCTATTTGAAGTTGCTTGTGAGGCTATGTCATATCTATGATACTAGGGGAGGTGTAAAAAGAGTTAAAGATGGGGCTTCCCAGGACCAAATTTTAAATGAGACAAGGTTGCAGAATTTGCAGCGTGAACTTGTGAACGATCTACGCGAGGTATCATACTTACACCTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0007275 GO:0008150 GO:0009504 GO:0009506 GO:0009524 GO:0009555 GO:0016020 GO:0016192 GO:0030054 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0055044 GO:0071944 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.53

Weight (kDa)

7.49

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01780 AT3G01780
fragaria_vesca	FvH4_5g15940
malus_domestica	MD06G1184100.v1.1 MD14G1190000.v1.1
prunus_persica	Prupe.5G183000_v2.0.a1
pyrus_communis	pycom06g16320 pycom06g16330 pycom14g15780
rosa_chinensis	RchiOBHm_Chr7g0180111
rosa_laevigata	RLG00000005292
rosa_multiflora	Rmu_sc0017616.1_g000007 Rmu_ssc0000119.1_g000034
rosa_roxburghii	Rroxscaffold_3G00273120
rosa_rugosa	Rorug06G0430700
rosa_samantha	Rh7AG031100 Rh7BG031000 Rh7CG033000 Rh7DG031600
rosa_wichuraiana	Rw7G002580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	600
AcsI	RAATTY	2 cut(s)	543, 568
AfiI	CCNNNNNNNGG	2 cut(s)	155, 234
AgsI	TTSAA	2 cut(s)	263, 463
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	3 cut(s)	80, 98, 170
AluI	AGCT	3 cut(s)	80, 98, 170
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	2 cut(s)	285, 548
Alw44I	GTGCAC	1 cut(s)	360
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	139, 407, 433
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	2 cut(s)	543, 568
AspS9I	GGNCC	3 cut(s)	433, 438, 538
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	438, 538
BaeGI	GKGCMC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	586
BccI	CCATC	2 cut(s)	307, 518
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	285, 548
BfaI	CTAG	1 cut(s)	498
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	2 cut(s)	438, 538
BmgT120I	GGNCC	3 cut(s)	433, 438, 538
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	336, 534
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 234
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	2 cut(s)	336, 534
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	155, 234
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	586
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	141, 409, 435
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	3 cut(s)	156, 406, 436
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	155, 234
BsmAI	GTCTC	2 cut(s)	285, 548
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	3 cut(s)	141, 409, 435
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	4 cut(s)	61, 109, 202, 592
BspANI	GGCC	3 cut(s)	141, 409, 435
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	336, 534
BssMI	GATC	4 cut(s)	61, 109, 202, 592
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	2 cut(s)	119, 130
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstC8I	GCNNGC	4 cut(s)	72, 82, 381, 407
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	600
BstKTI	GATC	4 cut(s)	64, 112, 205, 595
BstMAI	GTCTC	2 cut(s)	285, 548
BstMBI	GATC	4 cut(s)	61, 109, 202, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 475, 571
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	141, 409, 435
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	72, 82, 381, 407
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	3 cut(s)	433, 438, 538
CseI	GACGC	1 cut(s)	194
CviAII	CATG	1 cut(s)	71
DpnI	GATC	4 cut(s)	63, 111, 204, 594
DpnII	GATC	4 cut(s)	61, 109, 202, 592
DraI	TTTAAA	1 cut(s)	549
Eam1104I	CTCTTC	2 cut(s)	119, 130
EarI	CTCTTC	2 cut(s)	119, 130
Eco130I	CCWWGG	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	438, 538
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	74
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	1 cut(s)	498
GluI	GCNGC	1 cut(s)	575
HaeIII	GGCC	3 cut(s)	141, 409, 435
HapII	CCGG	3 cut(s)	156, 406, 436
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	2 cut(s)	56, 192
HpaII	CCGG	3 cut(s)	156, 406, 436
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	3 cut(s)	362, 581, 589
Hpy188I	TCNGA	1 cut(s)	61
Hpy8I	GTNNAC	3 cut(s)	362, 581, 589
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	7 cut(s)	4, 70, 84, 362, 446, 565, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 475, 571
Hsp92II	CATG	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	61, 109, 202, 592
LmnI	GCTCC	1 cut(s)	332
Lsp1109I	GCAGC	1 cut(s)	586
LweI	GCATC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	63, 111, 204, 594
MboI	GATC	4 cut(s)	61, 109, 202, 592
MboII	GAAGA	2 cut(s)	106, 147
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	4 cut(s)	367, 447, 543, 568
Mph1103I	ATGCAT	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	405
MseI	TTAA	6 cut(s)	18, 207, 417, 519, 548, 625
MslI	CAYNNNNRTG	2 cut(s)	311, 489
MspI	CCGG	3 cut(s)	156, 406, 436
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	10, 475, 571
NaeI	GCCGGC	1 cut(s)	407
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	61, 109, 202, 592
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	214
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PdiI	GCCGGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	56, 192
PkrI	GCNGC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	3 cut(s)	433, 438, 538
PstNI	CAGNNNCTG	1 cut(s)	380
RseI	CAYNNNNRTG	2 cut(s)	311, 489
SaqAI	TTAA	6 cut(s)	18, 207, 417, 519, 548, 625
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	4 cut(s)	61, 109, 202, 592
Sau96I	GGNCC	3 cut(s)	433, 438, 538
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	260
SinI	GGWCC	2 cut(s)	438, 538
SmiMI	CAYNNNNRTG	2 cut(s)	311, 489
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	367, 447, 543, 568
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	91
TasI	AATT	4 cut(s)	367, 447, 543, 568
TfiI	GAWTC	2 cut(s)	56, 192
Tru1I	TTAA	6 cut(s)	18, 207, 417, 519, 548, 625
Tru9I	TTAA	6 cut(s)	18, 207, 417, 519, 548, 625
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	574
Tsp45I	GTSAC	1 cut(s)	214
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	2 cut(s)	438, 538
XagI	CCTNNNNNAGG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	543, 568
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.