Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

56618364 .. 56619617

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0430700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGACCAAATGGAGCGTGTGCATGCTCGGCACCGACAATGGCGAGAGTCAATGAGTTCTTCACAACGTCAAGCATACTTGGCACGACGACGCGCAATAGCTCAAGAAAAGCGACCCGTGGTGGAAACTAGCCCAAGTAACAGAGCTGAACAAGCTCCAGGCACAAGTTCAAGAATTTCTTCAAATTCCAACAACCCCGAACAAGACTACTCAAGGGTTCGCTTAACTCGCATAAGACAAATGGCACGTTCGAATAGATCAGAAACAAGCGATGGAGTTGTCCGAATTTCTACTCGCTATGGTGTTTACCTCCCAGATCATGTTTTTAGTCATGGACAATTATATGTGGCATTGTCGAGAGGAGTATCGGAGTCAACCACAAAAGTTCTGGTTAAAAAAGGATCCATAGTTGGTGAAGATGGCGTATTTACAAAGAATGTCGTATTTAAAGAAGTTTTGCTTCATTCAAACACAAATGATAGATCGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

164

Amino Acids

18.59

Weight (kDa)

10.67

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	30
AccII	CGCG	1 cut(s)	93
AclWI	GGATC	2 cut(s)	396, 409
AcsI	RAATTY	3 cut(s)	174, 184, 285
AgsI	TTSAA	3 cut(s)	171, 183, 468
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	3 cut(s)	101, 146, 155
AluI	AGCT	3 cut(s)	101, 146, 155
AlwI	GGATC	2 cut(s)	396, 409
ApoI	RAATTY	3 cut(s)	174, 184, 285
Asp700I	GAANNNNTTC	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	480
BccI	CCATC	2 cut(s)	266, 413
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	32, 403
BmrFI	CCNGG	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	87, 196
BsaJI	CCNNGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	93
BshNI	GGYRCC	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	4 cut(s)	257, 316, 401, 482
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	32, 403
BspPI	GGATC	2 cut(s)	396, 409
BspT104I	TTCGAA	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	4 cut(s)	257, 316, 401, 482
Bst2UI	CCWGG	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	4 cut(s)	260, 319, 404, 485
BstMBI	GATC	4 cut(s)	257, 316, 401, 482
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 80, 152, 228
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	99
CviAII	CATG	3 cut(s)	23, 320, 332
CviJI	RGCY	4 cut(s)	101, 132, 146, 155
CviKI_1	RGCY	4 cut(s)	101, 132, 146, 155
DpnI	GATC	4 cut(s)	259, 318, 403, 484
DpnII	GATC	4 cut(s)	257, 316, 401, 482
DraI	TTTAAA	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	3 cut(s)	26, 323, 335
FalI	AAGNNNNNCTT	4 cut(s)	163, 195, 444, 476
FatI	CATG	3 cut(s)	22, 319, 331
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	94
GsuI	CTGGAG	1 cut(s)	141
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	26, 323, 335
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	2 cut(s)	47, 371
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	2 cut(s)	307, 375
Hpy188I	TCNGA	3 cut(s)	262, 284, 370
Hpy188III	TCNNGA	3 cut(s)	104, 171, 357
Hpy8I	GTNNAC	2 cut(s)	307, 375
Hpy99I	CGWCG	2 cut(s)	90, 93
HpyCH4IV	ACGT	2 cut(s)	67, 247
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 80, 152, 228
HpySE526I	ACGT	2 cut(s)	67, 247
Hsp92II	CATG	3 cut(s)	26, 323, 335
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	257, 316, 401, 482
LmnI	GCTCC	2 cut(s)	13, 160
LpnPI	CCDG	4 cut(s)	144, 171, 327, 374
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	67, 247
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	4 cut(s)	259, 318, 403, 484
MboI	GATC	4 cut(s)	257, 316, 401, 482
MboII	GAAGA	4 cut(s)	51, 171, 428, 480
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	4 cut(s)	174, 184, 285, 338
MlyI	GAGTC	2 cut(s)	56, 380
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	2 cut(s)	320, 353
MroXI	GAANNNNTTC	1 cut(s)	178
MseI	TTAA	3 cut(s)	224, 393, 447
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	4 cut(s)	28, 80, 152, 228
NdeII	GATC	4 cut(s)	257, 316, 401, 482
NlaIII	CATG	3 cut(s)	26, 323, 335
NlaIV	GGNNCC	2 cut(s)	32, 403
NmeAIII	GCCGAG	1 cut(s)	7
NspI	RCATGY	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	178
PleI	GAGTC	2 cut(s)	55, 379
PpsI	GAGTC	2 cut(s)	55, 379
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	32, 403
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	401
SaqAI	TTAA	3 cut(s)	224, 393, 447
Sau3AI	GATC	4 cut(s)	257, 316, 401, 482
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	56, 380
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	6 cut(s)	70, 103, 148, 157, 250, 312
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	102, 211
SmoI	CTYRAG	2 cut(s)	102, 211
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	4 cut(s)	174, 184, 285, 338
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	157
TaiI	ACGT	2 cut(s)	70, 250
TaqI	TCGA	2 cut(s)	251, 356
TasI	AATT	4 cut(s)	174, 184, 285, 338
Tru1I	TTAA	3 cut(s)	224, 393, 447
Tru9I	TTAA	3 cut(s)	224, 393, 447
TspDTI	ATGAA	2 cut(s)	452, 480
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	174, 184, 285
XceI	RCATGY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.