RchiOBHm_Chr5g0004951

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002571
Physical Location & Seq
Forward (+)
3269173 .. 3274955
5783 bp
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UTR
Exon/CDS
Intron
PRQ28618

Sequence Viewer

Length: 558 bp
ATGGGTGTTGCTGAGGACTGCTGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTGTGGTAGAAAAGACTGGAGGCCCAGCTGAAAGTTATGATGATTTCACTGGTTCATTGCCTGAAAATGATTGCCGATATGCAATCTATGACTTTGATTTTGTCACTTCAGAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCATGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGTGTTTCCTTCAAAAGATCAATTTGATGCAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGGTTGGTGGTAGCTTTGAAATGACAACATAA

Protein Analysis

185

Amino Acids

21.03

Weight (kDa)

5.03

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 2 - 82 2.3e-19 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 517
AciI CCGC 1 cut(s) 414
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 192, 251
AgsI TTSAA 6 cut(s) 376, 383, 396, 422, 435, 545
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 128, 455, 540
AluI AGCT 3 cut(s) 128, 455, 540
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 2 cut(s) 54, 121
ApeKI GCWGC 5 cut(s) 21, 349, 452, 455, 517
ApoI RAATTY 1 cut(s) 261
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 426
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 122, 470
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 503
BbvCI CCTCAGC 1 cut(s) 12
BbvI GCAGC 5 cut(s) 8, 361, 442, 464, 504
BciT130I CCWGG 1 cut(s) 282
BfmI CTRYAG 2 cut(s) 41, 347
BfoI RGCGCY 1 cut(s) 355
BfuAI ACCTGC 1 cut(s) 517
BglII AGATCT 1 cut(s) 231
BisI GCNGC 5 cut(s) 22, 350, 453, 456, 518
BlsI GCNGC 5 cut(s) 23, 351, 454, 457, 519
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 122, 470
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 482
Bse1I ACTGG 3 cut(s) 121, 154, 340
Bse3DI GCAATG 2 cut(s) 155, 240
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 3 cut(s) 261, 290, 336
BseMI GCAATG 2 cut(s) 155, 240
BseNI ACTGG 3 cut(s) 121, 154, 340
BseXI GCAGC 5 cut(s) 8, 361, 442, 464, 504
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 515
BshFI GGCC 2 cut(s) 56, 123
BsnI GGCC 2 cut(s) 56, 123
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 2 cut(s) 231, 439
BspACI CCGC 1 cut(s) 414
BspANI GGCC 2 cut(s) 56, 123
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 2 cut(s) 45, 351
BspMI ACCTGC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 155, 240
BsrI ACTGG 3 cut(s) 121, 154, 340
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 2 cut(s) 231, 439
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 247, 503, 507
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 261, 290, 336
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 2 cut(s) 234, 442
BstMBI GATC 2 cut(s) 231, 439
BstMWI GCNNNNNNNGC 3 cut(s) 225, 502, 523
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 2 cut(s) 41, 347
BstV1I GCAGC 5 cut(s) 8, 361, 442, 464, 504
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 56, 123
BtsCI GGATG 3 cut(s) 261, 290, 336
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 2 cut(s) 147, 344
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 3 cut(s) 247, 503, 507
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 122, 470
CviAII CATG 2 cut(s) 246, 406
CviJI RGCY 8 cut(s) 56, 123, 128, 455, 501, 509, 517, 540
CviKI_1 RGCY 8 cut(s) 56, 123, 128, 455, 501, 509, 517, 540
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 233, 441
DpnII GATC 2 cut(s) 231, 439
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 482
Eco147I AGGCCT 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 503
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 2 cut(s) 192, 251
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 2 cut(s) 249, 409
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 221, 253
FatI CATG 2 cut(s) 245, 405
FauI CCCGC 1 cut(s) 421
FauNDI CATATG 1 cut(s) 522
Fnu4HI GCNGC 5 cut(s) 22, 350, 453, 456, 518
FokI GGATG 3 cut(s) 268, 297, 323
FriOI GRGCYC 1 cut(s) 503
Fsp4HI GCNGC 5 cut(s) 22, 350, 453, 456, 518
GlaI GCGC 1 cut(s) 353
GluI GCNGC 5 cut(s) 22, 350, 453, 456, 518
GsaI CCCAGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 138
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 56, 123
HhaI GCGC 1 cut(s) 354
Hin1II CATG 2 cut(s) 249, 409
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 1 cut(s) 409
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 2 cut(s) 46, 441
HpyCH4V TGCA 9 cut(s) 24, 43, 182, 245, 349, 452, 496, 520, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 502, 523
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 2 cut(s) 249, 409
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 231, 439
LguI GCTCTTC 1 cut(s) 218
Lsp1109I GCAGC 5 cut(s) 8, 361, 442, 464, 504
LweI GCATC 1 cut(s) 439
MaeIII GTNAC 2 cut(s) 202, 342
MalI GATC 2 cut(s) 233, 441
MboI GATC 2 cut(s) 231, 439
MboII GAAGA 6 cut(s) 100, 103, 226, 229, 235, 257
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 5 cut(s) 214, 261, 331, 391, 443
MnlI CCTC 4 cut(s) 7, 91, 113, 246
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 2 cut(s) 75, 330
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 2 cut(s) 128, 455
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 225, 502, 523
NdeI CATATG 1 cut(s) 522
NdeII GATC 2 cut(s) 231, 439
NlaIII CATG 2 cut(s) 249, 409
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 2 cut(s) 202, 342
NspI RCATGY 1 cut(s) 249
PaeI GCATGC 1 cut(s) 249
PceI AGGCCT 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 409
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 5 cut(s) 23, 351, 454, 457, 519
PshBI ATTAAT 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 122, 470
PstI CTGCAG 2 cut(s) 45, 351
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 128, 455
RseI CAYNNNNRTG 1 cut(s) 422
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 75, 330
SatI GCNGC 5 cut(s) 22, 350, 453, 456, 518
Sau3AI GATC 2 cut(s) 231, 439
Sau96I GGNCC 2 cut(s) 122, 470
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 503
SetI ASST 7 cut(s) 102, 130, 297, 381, 457, 531, 542
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 2 cut(s) 41, 347
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 422
SphI GCATGC 1 cut(s) 249
Sse9I AATT 5 cut(s) 214, 261, 331, 391, 443
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 1 cut(s) 414
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 482
TaqI TCGA 1 cut(s) 360
TasI AATT 5 cut(s) 214, 261, 331, 391, 443
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 75, 330
Tru9I TTAA 2 cut(s) 75, 330
TscAI CASTG 2 cut(s) 154, 351
TseFI GTSAC 2 cut(s) 202, 342
TseI GCWGC 5 cut(s) 21, 349, 452, 455, 517
Tsp45I GTSAC 2 cut(s) 202, 342
TspDTI ATGAA 4 cut(s) 144, 229, 272, 422
TspRI CASTG 2 cut(s) 154, 351
VpaK11BI GGWCC 1 cut(s) 470
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 261
XceI RCATGY 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.