Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

15258096 .. 15261597

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G183200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATCCTCCACTGATCAACGAGTCTTCCTTCTCAGCAGCTAACCCATCAGCGTACAGCCTGGCAGAGATTTGGCCCTTCAGCGGTGAACCCGGTGGAAGTGGTGGCGGGTTGGGTCTTCGAATGGGTAGTTTGGGTGGGCTTGGAGACAGCTCCGTGAACAGAGATGGGTCGTTGGAGGAATCGACCGTGACTGAGCAAAGCGGTGGAGGTGGTGGAAGAAAGAGAAGGGATGTGAGCTCTGAGGACGAGTCTTCTAAGCTGGTTTCCACTAGTAGTGCCAGTGGCTTGAAAGATTCCAGTGGAAAACGGATGAAACTAGCAGGATCTCAAAATGAAAATGGTGGTTCGAAAGCTGAAGTTGAAGAAAGTTCAGCAGCTGGTGACAACAAGCCAGCTGAACAAAGCACTAAACCTTCTGAGCCACCTAAGCAAGATTTTATCCATGTGAGGGCACGAAGGGGACAAGCTACTGACAGCCACAGTCTAGCAGAGAGGGCTAGGAGAGAAAAGATCAGCGAGAGAATGAAACTTCTCCAAGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTCGTCCTTGATGAAATTATTAATTACATTCAATCACTGCAGCACCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTCAATTCAAGGATGAACTTGAATCCCACCATTGAAGCCTTTCCTTCGAAAGATCTTGGTGCACAGCCATTTGATGGTGCAGGATTGCTATTTGGCTCGCACACACCAAGGGAGTATGCCCAAGGCTCACATCCCGAGTGGCTACATATGCAGGTCGGCAGTAGTTTCGAAAGAGCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

280

Amino Acids

29.7

Weight (kDa)

5.62

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	799
AccB7I	CCANNNNNTGG	2 cut(s)	544, 731
AciI	CCGC	3 cut(s)	84, 108, 204
AclWI	GGATC	2 cut(s)	12, 334
AcuI	CTGAAG	2 cut(s)	64, 378
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	4 cut(s)	83, 451, 544, 731
AgsI	TTSAA	8 cut(s)	292, 365, 611, 642, 653, 666, 679, 692
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	3 cut(s)	60, 550, 624
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AluBI	AGCT	9 cut(s)	41, 153, 240, 262, 356, 380, 398, 470, 649
AluI	AGCT	9 cut(s)	41, 153, 240, 262, 356, 380, 398, 470, 649
Alw21I	GWGCWC	2 cut(s)	242, 721
Alw26I	GTCTC	1 cut(s)	141
Alw44I	GTGCAC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	12, 334
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	791
AoxI	GGCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	38, 377, 619
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	696
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	98, 395
AsuII	TTCGAA	4 cut(s)	121, 350, 704, 825
AvaI	CYCGRG	1 cut(s)	791
BaeGI	GKGCMC	2 cut(s)	457, 721
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	242
BbsI	GAAGAC	3 cut(s)	18, 110, 246
Bbv12I	GWGCWC	2 cut(s)	242, 721
BbvI	GCAGC	3 cut(s)	50, 389, 631
BccI	CCATC	3 cut(s)	55, 161, 725
BcgI	CGANNNNNNTGC	2 cut(s)	805, 839
BciT130I	CCWGG	3 cut(s)	62, 552, 626
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	141
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	4 cut(s)	273, 320, 488, 501
BfmI	CTRYAG	1 cut(s)	617
BfuAI	ACCTGC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	3 cut(s)	39, 378, 620
BlsI	GCNGC	3 cut(s)	40, 379, 621
Bme1390I	CCNGG	4 cut(s)	62, 93, 552, 626
BmeT110I	CYCGRG	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	6, 549
BmrFI	CCNGG	4 cut(s)	62, 93, 552, 626
BpiI	GAAGAC	3 cut(s)	18, 110, 246
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	4 cut(s)	121, 350, 704, 825
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	764, 778
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 451, 544, 731
Bse1I	ACTGG	2 cut(s)	282, 300
BseBI	CCWGG	3 cut(s)	62, 552, 626
BseDI	CCNNGG	2 cut(s)	764, 778
BseGI	GGATG	5 cut(s)	238, 318, 560, 675, 787
BseLI	CCNNNNNNNGG	4 cut(s)	83, 451, 544, 731
BseMII	CTCAG	4 cut(s)	48, 186, 234, 411
BseNI	ACTGG	2 cut(s)	282, 300
BseSI	GKGCMC	2 cut(s)	457, 721
BseXI	GCAGC	3 cut(s)	50, 389, 631
BsgI	GTGCAG	1 cut(s)	756
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	242, 721
BsiHKCI	CYCGRG	1 cut(s)	791
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	4 cut(s)	83, 451, 544, 731
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	791
Bsp119I	TTCGAA	4 cut(s)	121, 350, 704, 825
Bsp1286I	GDGCHC	3 cut(s)	242, 457, 721
Bsp143I	GATC	5 cut(s)	4, 15, 326, 513, 709
BspACI	CCGC	3 cut(s)	84, 108, 204
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	4 cut(s)	47, 187, 235, 412
BspLI	GGNNCC	2 cut(s)	6, 549
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	799
BspPI	GGATC	2 cut(s)	12, 334
BspT104I	TTCGAA	4 cut(s)	121, 350, 704, 825
BsrI	ACTGG	2 cut(s)	282, 300
BssECI	CCNNGG	2 cut(s)	764, 778
BssMI	GATC	5 cut(s)	4, 15, 326, 513, 709
BssT1I	CCWWGG	2 cut(s)	764, 778
Bst2UI	CCWGG	3 cut(s)	62, 552, 626
Bst4CI	ACNGT	2 cut(s)	190, 485
BstBI	TTCGAA	4 cut(s)	121, 350, 704, 825
BstC8I	GCNNGC	2 cut(s)	396, 755
BstDEI	CTNAG	6 cut(s)	34, 195, 243, 258, 420, 429
BstF5I	GGATG	5 cut(s)	238, 318, 560, 675, 787
BstKTI	GATC	5 cut(s)	7, 18, 329, 516, 712
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	5 cut(s)	4, 15, 326, 513, 709
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	430, 497, 805
BstNI	CCWGG	3 cut(s)	62, 552, 626
BstSCI	CCNGG	4 cut(s)	60, 91, 550, 624
BstSFI	CTRYAG	1 cut(s)	617
BstSLI	GKGCMC	2 cut(s)	457, 721
BstV1I	GCAGC	3 cut(s)	50, 389, 631
BstV2I	GAAGAC	3 cut(s)	18, 110, 246
BstX2I	RGATCY	3 cut(s)	4, 326, 709
BstYI	RGATCY	3 cut(s)	4, 326, 709
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	5 cut(s)	238, 318, 560, 675, 787
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	4 cut(s)	11, 289, 307, 614
BveI	ACCTGC	1 cut(s)	799
Cac8I	GCNNGC	2 cut(s)	396, 755
CaiI	CAGNNNCTG	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	75
CsiI	ACCWGGT	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	6 cut(s)	34, 195, 243, 258, 420, 429
DpnI	GATC	5 cut(s)	6, 17, 328, 515, 711
DpnII	GATC	5 cut(s)	4, 15, 326, 513, 709
Ecl136II	GAGCTC	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	764, 778
Eco24I	GRGCYC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	64, 378
Eco88I	CYCGRG	1 cut(s)	791
EcoICRI	GAGCTC	1 cut(s)	240
EcoRII	CCWGG	3 cut(s)	60, 550, 624
EcoT14I	CCWWGG	2 cut(s)	764, 778
EcoT38I	GRGCYC	1 cut(s)	242
ErhI	CCWWGG	2 cut(s)	764, 778
FaeI	CATG	1 cut(s)	449
FaiI	YATR	4 cut(s)	447, 774, 804, 806
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	1 cut(s)	445
FauI	CCCGC	1 cut(s)	101
FauNDI	CATATG	1 cut(s)	804
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	39, 378, 620
FokI	GGATG	5 cut(s)	245, 325, 567, 682, 774
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	39, 378, 620
FspBI	CTAG	4 cut(s)	273, 320, 488, 501
GluI	GCNGC	3 cut(s)	39, 378, 620
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	5 cut(s)	23, 182, 251, 296, 679
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	98, 395
Hpy166II	GTNNAC	3 cut(s)	89, 160, 719
Hpy188I	TCNGA	2 cut(s)	244, 421
Hpy188III	TCNNGA	1 cut(s)	791
Hpy8I	GTNNAC	3 cut(s)	89, 160, 719
HpyAV	CCTTC	6 cut(s)	40, 88, 222, 426, 453, 711
HpyCH4III	ACNGT	2 cut(s)	190, 485
HpyCH4IV	ACGT	1 cut(s)	836
HpyCH4V	TGCA	4 cut(s)	619, 719, 737, 808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	430, 497, 805
HpyF3I	CTNAG	6 cut(s)	34, 195, 243, 258, 420, 429
HpySE526I	ACGT	1 cut(s)	836
Hsp92II	CATG	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	4, 15, 326, 513, 709
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	3 cut(s)	50, 389, 631
MabI	ACCWGGT	1 cut(s)	624
MaeI	CTAG	4 cut(s)	273, 320, 488, 501
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	2 cut(s)	190, 383
MalI	GATC	5 cut(s)	6, 17, 328, 515, 711
MboI	GATC	5 cut(s)	4, 15, 326, 513, 709
MboII	GAAGA	5 cut(s)	18, 110, 231, 246, 377
MflI	RGATCY	3 cut(s)	4, 326, 709
MhlI	GDGCHC	3 cut(s)	242, 457, 721
MluCI	AATT	3 cut(s)	594, 601, 661
MlyI	GAGTC	2 cut(s)	32, 260
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	6 cut(s)	18, 172, 203, 238, 444, 489
MroXI	GAANNNNTTC	1 cut(s)	696
MseI	TTAA	1 cut(s)	600
MspA1I	CMGCKG	3 cut(s)	84, 380, 398
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	4 cut(s)	62, 93, 552, 626
MvaI	CCWGG	3 cut(s)	62, 552, 626
MwoI	GCNNNNNNNGC	3 cut(s)	430, 497, 805
NciI	CCSGG	1 cut(s)	93
NdeI	CATATG	1 cut(s)	804
NdeII	GATC	5 cut(s)	4, 15, 326, 513, 709
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	2 cut(s)	6, 549
NmuCI	GTSAC	2 cut(s)	190, 383
NspV	TTCGAA	4 cut(s)	121, 350, 704, 825
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	182, 296, 679
PflMI	CCANNNNNTGG	2 cut(s)	544, 731
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	40, 379, 621
PleI	GAGTC	2 cut(s)	31, 259
PpsI	GAGTC	2 cut(s)	31, 259
PshBI	ATTAAT	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	60, 550, 624
PspGI	CCWGG	3 cut(s)	60, 550, 624
PspN4I	GGNNCC	2 cut(s)	6, 549
PspPI	GGNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	621
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	3 cut(s)	4, 326, 709
PvuII	CAGCTG	2 cut(s)	380, 398
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	3 cut(s)	39, 378, 620
Sau3AI	GATC	5 cut(s)	4, 15, 326, 513, 709
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	2 cut(s)	32, 260
ScrFI	CCNGG	4 cut(s)	62, 93, 552, 626
SduI	GDGCHC	3 cut(s)	242, 457, 721
SexAI	ACCWGGT	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	617
SfuI	TTCGAA	4 cut(s)	121, 350, 704, 825
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	3 cut(s)	594, 601, 661
SsiI	CCGC	3 cut(s)	84, 108, 204
SspMI	CTAG	4 cut(s)	273, 320, 488, 501
SstI	GAGCTC	1 cut(s)	242
StyD4I	CCNGG	4 cut(s)	60, 91, 550, 624
StyI	CCWWGG	2 cut(s)	764, 778
TaaI	ACNGT	2 cut(s)	190, 485
TaiI	ACGT	1 cut(s)	839
TaqI	TCGA	5 cut(s)	121, 185, 350, 704, 825
TasI	AATT	3 cut(s)	594, 601, 661
TfiI	GAWTC	3 cut(s)	182, 296, 679
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	4 cut(s)	18, 289, 307, 621
TseFI	GTSAC	2 cut(s)	190, 383
TseI	GCWGC	3 cut(s)	38, 377, 619
Tsp45I	GTSAC	2 cut(s)	190, 383
TspDTI	ATGAA	6 cut(s)	329, 351, 542, 606, 659, 686
TspGWI	ACGGA	2 cut(s)	145, 325
TspRI	CASTG	4 cut(s)	18, 289, 307, 621
Van91I	CCANNNNNTGG	2 cut(s)	544, 731
VneI	GTGCAC	1 cut(s)	717
VspI	ATTAAT	1 cut(s)	600
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	4 cut(s)	273, 320, 488, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.