Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

32259629 .. 32262840

Gene Structure 3212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1184400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAATTCGGTTGTTGACAAAATGGATCCTCCACTGATCAACGAGTCTTCCTTCTCAGCAGCTAACCCAGCATCCTACAGCCTGGCGGAGATTTGGCCCATCAGCGGCGAACCCGGTGGCAGCGGTGGCGGGTTGGGGCTCCGAATGGGTAACTTGGGTCAGAGTTTCGGTGGGCTTGGAGATAGCTCTGTGAACAGAGATGGGTCGTTGGAGGAATCGACTGTGACTGAGCAAAGTGGCGGCGGCTGTGGCGGAAGAAAGAGAAGGGATGTGAGCTCTGAGGACGAGTCTTCGAAGCAGGTTTCCACCAGTAGTGGCAATGGCTTGAAATATTCGGGTGGAAAACGGATGAAATTAGCGGGATCCAGTAACGAAAATGGCAGTTTGAAGGCTGAAGTTGAAGAAAGTTCAGCTGCTGGTGACAAGAAGCCAGCTGAAGAAAGCACTAAACCTTCCGAGCCACCCAAGCAAGACTTTATCCATGTGAGGGCAAGAAGGGGACAAGCTACAGATAGCCACAGTCTAGCCGAGAGAGCTAGGAGAGAGAAGATCAGCGAGAGGATGAAAATTCTCCAAGATTTGGTTCCTGGATGCAACAAGGTTATTGGGAAAGCACTTGTCCTTGACGAGATTATTAATTACATCCAATCACTGCAGCACCAGGTCGAGTTCCTTTCAATGAAGCTTGAAGCAGTCAATTCAAGGATGAACATGAATCCCGCTATTGAAGCGTTTCCTCCAAAAGATCTCGGTGCACAGCCATTTGACGCTGCAGGGTTGTTATTTGGCTCCCACACACCTAGAGAGTACGCCCAAAGCTCACAGCCCGAATGGCTACATATGCAGGTTGGTGGTAGTTTCGAAAGAGCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

292

Amino Acids

31.07

Weight (kDa)

5.68

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	172 - 219	4.5e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	177 - 221	4.4e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	289, 835
AccB7I	CCANNNNNTGG	1 cut(s)	580
AciI	CCGC	9 cut(s)	86, 105, 123, 129, 240, 243, 252, 359, 720
AclWI	GGATC	4 cut(s)	20, 33, 357, 370
AcsI	RAATTY	2 cut(s)	4, 567
AcuI	CTGAAG	2 cut(s)	414, 456
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	3 cut(s)	104, 487, 580
AgsI	TTSAA	7 cut(s)	328, 388, 401, 678, 689, 702, 728
AjnI	CCWGG	3 cut(s)	81, 586, 660
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AluBI	AGCT	9 cut(s)	62, 186, 276, 413, 434, 506, 536, 685, 819
AluI	AGCT	9 cut(s)	62, 186, 276, 413, 434, 506, 536, 685, 819
Alw21I	GWGCWC	2 cut(s)	278, 757
Alw44I	GTGCAC	1 cut(s)	753
AlwI	GGATC	4 cut(s)	20, 33, 357, 370
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	95
ApaLI	GTGCAC	1 cut(s)	753
ApeKI	GCWGC	5 cut(s)	59, 120, 413, 655, 770
ApoI	RAATTY	2 cut(s)	4, 567
AseI	ATTAAT	1 cut(s)	636
Asp700I	GAANNNNTTC	1 cut(s)	732
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	431
AsuII	TTCGAA	2 cut(s)	293, 861
BaeGI	GKGCMC	1 cut(s)	757
BamHI	GGATCC	2 cut(s)	25, 362
BanII	GRGCYC	2 cut(s)	141, 278
BbsI	GAAGAC	2 cut(s)	39, 282
Bbv12I	GWGCWC	2 cut(s)	278, 757
BbvI	GCAGC	5 cut(s)	71, 132, 400, 667, 757
BccI	CCATC	2 cut(s)	107, 194
BciT130I	CCWGG	3 cut(s)	83, 588, 662
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	3 cut(s)	524, 537, 801
BfmI	CTRYAG	4 cut(s)	76, 507, 653, 771
BfuAI	ACCTGC	2 cut(s)	289, 835
BglI	GCCNNNNNGGC	1 cut(s)	832
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	8 cut(s)	60, 106, 121, 241, 244, 414, 656, 771
BlsI	GCNGC	8 cut(s)	61, 107, 122, 242, 245, 415, 657, 772
Bme1390I	CCNGG	4 cut(s)	83, 114, 588, 662
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	5 cut(s)	27, 140, 364, 585, 790
BmrFI	CCNGG	4 cut(s)	83, 114, 588, 662
BmsI	GCATC	2 cut(s)	80, 581
BpiI	GAAGAC	2 cut(s)	39, 282
Bpu14I	TTCGAA	2 cut(s)	293, 861
BpuMI	CCSGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 487, 580
Bse1I	ACTGG	2 cut(s)	309, 366
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	3 cut(s)	83, 588, 662
BseGI	GGATG	7 cut(s)	71, 274, 354, 567, 596, 642, 711
BseLI	CCNNNNNNNGG	3 cut(s)	104, 487, 580
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	3 cut(s)	69, 219, 270
BseNI	ACTGG	2 cut(s)	309, 366
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	5 cut(s)	71, 132, 400, 667, 757
BseYI	CCCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	2 cut(s)	278, 757
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	3 cut(s)	104, 487, 580
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	1 cut(s)	97
Bsp119I	TTCGAA	2 cut(s)	293, 861
Bsp1286I	GDGCHC	3 cut(s)	141, 278, 757
Bsp143I	GATC	5 cut(s)	25, 36, 362, 549, 745
BspACI	CCGC	9 cut(s)	86, 105, 123, 129, 240, 243, 252, 359, 720
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	3 cut(s)	68, 220, 271
BspLI	GGNNCC	5 cut(s)	27, 140, 364, 585, 790
BspMAI	CTGCAG	2 cut(s)	657, 775
BspMI	ACCTGC	2 cut(s)	289, 835
BspPI	GGATC	4 cut(s)	20, 33, 357, 370
BspT104I	TTCGAA	2 cut(s)	293, 861
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	309, 366
BssMI	GATC	5 cut(s)	25, 36, 362, 549, 745
Bst2UI	CCWGG	3 cut(s)	83, 588, 662
Bst4CI	ACNGT	2 cut(s)	223, 521
BstBI	TTCGAA	2 cut(s)	293, 861
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	55, 228, 279
BstF5I	GGATG	7 cut(s)	71, 274, 354, 567, 596, 642, 711
BstKTI	GATC	5 cut(s)	28, 39, 365, 552, 748
BstMBI	GATC	5 cut(s)	25, 36, 362, 549, 745
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 126, 249, 466, 533, 728, 832, 841
BstNI	CCWGG	3 cut(s)	83, 588, 662
BstSCI	CCNGG	4 cut(s)	81, 112, 586, 660
BstSFI	CTRYAG	4 cut(s)	76, 507, 653, 771
BstSLI	GKGCMC	1 cut(s)	757
BstV1I	GCAGC	5 cut(s)	71, 132, 400, 667, 757
BstV2I	GAAGAC	2 cut(s)	39, 282
BstX2I	RGATCY	3 cut(s)	25, 362, 745
BstYI	RGATCY	3 cut(s)	25, 362, 745
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	7 cut(s)	71, 274, 354, 567, 596, 642, 711
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	2 cut(s)	32, 650
BveI	ACCTGC	2 cut(s)	289, 835
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	1 cut(s)	776
CsiI	ACCWGGT	1 cut(s)	660
Csp6I	GTAC	1 cut(s)	808
CviAII	CATG	2 cut(s)	482, 712
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	3 cut(s)	55, 228, 279
DpnI	GATC	5 cut(s)	27, 38, 364, 551, 747
DpnII	GATC	5 cut(s)	25, 36, 362, 549, 745
EciI	GGCGGA	2 cut(s)	101, 267
Ecl136II	GAGCTC	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	141, 278
Eco53kI	GAGCTC	1 cut(s)	276
Eco57I	CTGAAG	2 cut(s)	414, 456
EcoICRI	GAGCTC	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	81, 586, 660
EcoT38I	GRGCYC	2 cut(s)	141, 278
FaeI	CATG	2 cut(s)	485, 715
FaiI	YATR	4 cut(s)	483, 713, 840, 842
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	2 cut(s)	481, 711
FauI	CCCGC	3 cut(s)	122, 352, 727
FauNDI	CATATG	1 cut(s)	840
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	8 cut(s)	60, 106, 121, 241, 244, 414, 656, 771
FokI	GGATG	7 cut(s)	58, 281, 361, 574, 603, 629, 718
FriOI	GRGCYC	2 cut(s)	141, 278
Fsp4HI	GCNGC	8 cut(s)	60, 106, 121, 241, 244, 414, 656, 771
FspBI	CTAG	3 cut(s)	524, 537, 801
GluI	GCNGC	8 cut(s)	60, 106, 121, 241, 244, 414, 656, 771
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	776
Hin1II	CATG	2 cut(s)	485, 715
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	4 cut(s)	44, 215, 287, 715
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	3 cut(s)	16, 193, 755
Hpy188I	TCNGA	4 cut(s)	143, 162, 280, 457
Hpy8I	GTNNAC	3 cut(s)	16, 193, 755
HpyAV	CCTTC	5 cut(s)	61, 258, 382, 462, 489
HpyCH4III	ACNGT	2 cut(s)	223, 521
HpyCH4IV	ACGT	1 cut(s)	872
HpyCH4V	TGCA	5 cut(s)	594, 655, 755, 773, 844
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 126, 249, 466, 533, 728, 832, 841
HpyF3I	CTNAG	3 cut(s)	55, 228, 279
HpySE526I	ACGT	1 cut(s)	872
Hsp92II	CATG	2 cut(s)	485, 715
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	25, 36, 362, 549, 745
LmnI	GCTCC	2 cut(s)	144, 794
Lsp1109I	GCAGC	5 cut(s)	71, 132, 400, 667, 757
LweI	GCATC	2 cut(s)	80, 581
MabI	ACCWGGT	1 cut(s)	660
MaeI	CTAG	3 cut(s)	524, 537, 801
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	4 cut(s)	149, 223, 368, 419
MalI	GATC	5 cut(s)	27, 38, 364, 551, 747
MboI	GATC	5 cut(s)	25, 36, 362, 549, 745
MboII	GAAGA	6 cut(s)	39, 267, 282, 413, 449, 559
MflI	RGATCY	3 cut(s)	25, 362, 745
MhlI	GDGCHC	3 cut(s)	141, 278, 757
MluCI	AATT	5 cut(s)	4, 353, 567, 637, 697
MlyI	GAGTC	2 cut(s)	53, 296
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	6 cut(s)	39, 205, 274, 480, 552, 747
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	1 cut(s)	636
MspA1I	CMGCKG	4 cut(s)	105, 123, 413, 434
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	4 cut(s)	83, 114, 588, 662
MvaI	CCWGG	3 cut(s)	83, 588, 662
MwoI	GCNNNNNNNGC	8 cut(s)	68, 126, 249, 466, 533, 728, 832, 841
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	840
NdeII	GATC	5 cut(s)	25, 36, 362, 549, 745
NlaIII	CATG	2 cut(s)	485, 715
NlaIV	GGNNCC	5 cut(s)	27, 140, 364, 585, 790
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	2 cut(s)	223, 419
NspV	TTCGAA	2 cut(s)	293, 861
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	215, 715
PflMI	CCANNNNNTGG	1 cut(s)	580
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	8 cut(s)	61, 107, 122, 242, 245, 415, 657, 772
PleI	GAGTC	2 cut(s)	52, 295
PpsI	GAGTC	2 cut(s)	52, 295
PshBI	ATTAAT	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	278
Psp6I	CCWGG	3 cut(s)	81, 586, 660
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	3 cut(s)	81, 586, 660
PspN4I	GGNNCC	5 cut(s)	27, 140, 364, 585, 790
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	2 cut(s)	657, 775
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	3 cut(s)	25, 362, 745
PvuII	CAGCTG	2 cut(s)	413, 434
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	8 cut(s)	60, 106, 121, 241, 244, 414, 656, 771
Sau3AI	GATC	5 cut(s)	25, 36, 362, 549, 745
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	2 cut(s)	53, 296
ScrFI	CCNGG	4 cut(s)	83, 114, 588, 662
SduI	GDGCHC	3 cut(s)	141, 278, 757
SexAI	ACCWGGT	1 cut(s)	660
SfaNI	GCATC	2 cut(s)	80, 581
SfcI	CTRYAG	4 cut(s)	76, 507, 653, 771
SfuI	TTCGAA	2 cut(s)	293, 861
Sse9I	AATT	5 cut(s)	4, 353, 567, 637, 697
SsiI	CCGC	9 cut(s)	86, 105, 123, 129, 240, 243, 252, 359, 720
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	3 cut(s)	524, 537, 801
SstI	GAGCTC	1 cut(s)	278
StyD4I	CCNGG	4 cut(s)	81, 112, 586, 660
TaaI	ACNGT	2 cut(s)	223, 521
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	4 cut(s)	218, 293, 666, 861
TasI	AATT	5 cut(s)	4, 353, 567, 637, 697
TauI	GCSGC	3 cut(s)	108, 243, 246
TfiI	GAWTC	2 cut(s)	215, 715
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	2 cut(s)	39, 657
TseFI	GTSAC	2 cut(s)	223, 419
TseI	GCWGC	5 cut(s)	59, 120, 413, 655, 770
Tsp45I	GTSAC	2 cut(s)	223, 419
TspDTI	ATGAA	6 cut(s)	17, 365, 578, 695, 722, 728
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	39, 657
Van91I	CCANNNNNTGG	1 cut(s)	580
VneI	GTGCAC	1 cut(s)	753
VspI	ATTAAT	1 cut(s)	636
XapI	RAATTY	2 cut(s)	4, 567
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	3 cut(s)	524, 537, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.