Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

2083096 .. 2087324

Gene Structure 4229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATCCTCCGCTGATCAACGAGGCGTCTTTCTCGGCGGCGAACCCGGCGGCGTACAGCCTGGCGGAGATTTGGCCGTTCGGCGGCGAGCCGGGCCGGTTGGGGCTCCGAATGGGGAGTTTGGGTGGTGGGTTGGGAGAGAGCTCCGGGAATAGAGATGGGTCGTTGGAGGAATCGACGGTGACGGAGCAGAGCGGCGGCGGAAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAGTCTTCCAAGATGGTTTCTACTAGTAGTGCTAATGGCTTGAAAAATTCGAGTGGGAAACGGATGAAGTTAGAGGGATCTAGAAACGAAAACGGCAATTCTAAAGCTGAAGTTGAAACAAGTTCAGGGGCTGATGACAAGCCAGAGGAACAAAGTACTAAACCTTCTGAGCCAGCCAAGCAAGATTATATCCATGTGAGGGCGAGAAGGGGCCAAGCTACCGATAGCCACAGTCTCGCAGAGAGAGCAAGGAGAGAAAAGATCAGCGAGAGGATGAAAATTCTTCAAGATTTGGTTCCCGGATGTAATAAGGTATTTATGTTATCTCTACTTGGTTTTAGGTCAGTCAAATTACTTGGCACATGTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

201

Amino Acids

21.53

Weight (kDa)

8.53

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	195
AciI	CCGC	8 cut(s)	11, 38, 50, 65, 84, 195, 198, 201
AclWI	GGATC	2 cut(s)	12, 319
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	280, 513
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	56, 391
AfiI	CCNNNNNNNGG	2 cut(s)	83, 433
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	3 cut(s)	277, 350, 521
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	144, 225, 341, 452
AluI	AGCT	4 cut(s)	144, 225, 341, 452
Alw21I	GWGCWC	2 cut(s)	146, 227
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	2 cut(s)	12, 319
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	74, 94, 445
ApoI	RAATTY	2 cut(s)	280, 513
AspS9I	GGNCC	2 cut(s)	94, 445
AsuC2I	CCSGG	4 cut(s)	47, 93, 148, 534
AsuHPI	GGTGA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	3 cut(s)	108, 146, 227
BarI	GAAGNNNNNNTAC	2 cut(s)	382, 414
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	146, 227
BccI	CCATC	2 cut(s)	152, 241
BceAI	ACGGC	2 cut(s)	61, 343
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	4 cut(s)	47, 93, 148, 534
BcoDI	GTCTC	1 cut(s)	473
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	2 cut(s)	258, 315
BisI	GCNGC	5 cut(s)	39, 51, 85, 196, 199
BlsI	GCNGC	5 cut(s)	40, 52, 86, 197, 200
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	5 cut(s)	47, 62, 93, 148, 534
BmgT120I	GGNCC	2 cut(s)	94, 445
BmiI	GGNNCC	4 cut(s)	6, 107, 446, 531
BmrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 534
BpiI	GAAGAC	1 cut(s)	231
BpuMI	CCSGG	4 cut(s)	47, 93, 148, 534
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 433
Bse118I	RCCGGY	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	5 cut(s)	223, 238, 303, 513, 542
BseLI	CCNNNNNNNGG	2 cut(s)	83, 433
BseMII	CTCAG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	76, 96, 447
BsiHKAI	GWGCWC	2 cut(s)	146, 227
BsiSI	CCGG	5 cut(s)	47, 92, 97, 147, 534
BslI	CCNNNNNNNGG	2 cut(s)	83, 433
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	76, 96, 447
Bsp1286I	GDGCHC	3 cut(s)	108, 146, 227
Bsp143I	GATC	4 cut(s)	4, 15, 311, 495
BspACI	CCGC	8 cut(s)	11, 38, 50, 65, 84, 195, 198, 201
BspANI	GGCC	3 cut(s)	76, 96, 447
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	6, 107, 446, 531
BspPI	GGATC	2 cut(s)	12, 319
BsrBI	CCGCTC	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	4, 15, 311, 495
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	181, 467
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	89, 408
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	5 cut(s)	223, 238, 303, 513, 542
BstKTI	GATC	4 cut(s)	7, 18, 314, 498
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	4 cut(s)	4, 15, 311, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 93, 412, 479
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	600
BstSCI	CCNGG	5 cut(s)	45, 60, 91, 146, 532
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	4, 311
BstYI	RGATCY	2 cut(s)	4, 311
BsuRI	GGCC	3 cut(s)	76, 96, 447
BtsCI	GGATG	5 cut(s)	223, 238, 303, 513, 542
Cac8I	GCNNGC	2 cut(s)	89, 408
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	2 cut(s)	94, 445
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	55, 390
CviAII	CATG	2 cut(s)	428, 597
CviQI	GTAC	2 cut(s)	55, 390
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	4 cut(s)	6, 17, 313, 497
DpnII	GATC	4 cut(s)	4, 15, 311, 495
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	2 cut(s)	80, 216
Ecl136II	GAGCTC	2 cut(s)	144, 225
Eco24I	GRGCYC	3 cut(s)	108, 146, 227
Eco53kI	GAGCTC	2 cut(s)	144, 225
Eco57I	CTGAAG	1 cut(s)	363
EcoICRI	GAGCTC	2 cut(s)	144, 225
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	3 cut(s)	108, 146, 227
FaeI	CATG	2 cut(s)	431, 600
FaiI	YATR	4 cut(s)	423, 429, 554, 598
FatI	CATG	2 cut(s)	427, 596
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	5 cut(s)	39, 51, 85, 196, 199
FokI	GGATG	5 cut(s)	230, 245, 310, 520, 549
FriOI	GRGCYC	3 cut(s)	108, 146, 227
Fsp4HI	GCNGC	5 cut(s)	39, 51, 85, 196, 199
FspBI	CTAG	2 cut(s)	258, 315
GluI	GCNGC	5 cut(s)	39, 51, 85, 196, 199
HaeIII	GGCC	3 cut(s)	76, 96, 447
HapII	CCGG	5 cut(s)	47, 92, 97, 147, 534
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	431, 600
HinfI	GANTC	2 cut(s)	173, 236
HpaII	CCGG	5 cut(s)	47, 92, 97, 147, 534
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	110, 229, 403
Hpy188III	TCNNGA	2 cut(s)	315, 521
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	198, 208, 408, 435
HpyCH4III	ACNGT	2 cut(s)	181, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 93, 412, 479
HpyF3I	CTNAG	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	431, 600
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	4, 15, 311, 495
LmnI	GCTCC	4 cut(s)	111, 149, 187, 230
MaeI	CTAG	2 cut(s)	258, 315
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	6, 17, 313, 497
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	4 cut(s)	4, 15, 311, 495
MboII	GAAGA	3 cut(s)	220, 231, 509
MflI	RGATCY	2 cut(s)	4, 311
MhlI	GDGCHC	3 cut(s)	108, 146, 227
MluCI	AATT	4 cut(s)	280, 331, 513, 584
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	16, 18, 163, 204, 223, 301, 373, 426, 498
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	5 cut(s)	47, 92, 97, 147, 534
MspR9I	CCNGG	5 cut(s)	47, 62, 93, 148, 534
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	47, 93, 412, 479
NciI	CCSGG	4 cut(s)	47, 93, 148, 534
NdeII	GATC	4 cut(s)	4, 15, 311, 495
NlaIII	CATG	2 cut(s)	431, 600
NlaIV	GGNNCC	4 cut(s)	6, 107, 446, 531
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	600
PciI	ACATGT	1 cut(s)	596
PfeI	GAWTC	1 cut(s)	173
PfoI	TCCNGGA	2 cut(s)	146, 532
PkrI	GCNGC	5 cut(s)	40, 52, 86, 197, 200
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PscI	ACATGT	1 cut(s)	596
Psp124BI	GAGCTC	2 cut(s)	146, 227
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	6, 107, 446, 531
PspPI	GGNCC	2 cut(s)	94, 445
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	2 cut(s)	4, 311
RsaI	GTAC	2 cut(s)	56, 391
RsaNI	GTAC	2 cut(s)	55, 390
SacI	GAGCTC	2 cut(s)	146, 227
SatI	GCNGC	5 cut(s)	39, 51, 85, 196, 199
Sau3AI	GATC	4 cut(s)	4, 15, 311, 495
Sau96I	GGNCC	2 cut(s)	94, 445
ScaI	AGTACT	1 cut(s)	391
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 534
SduI	GDGCHC	3 cut(s)	108, 146, 227
SetI	ASST	8 cut(s)	146, 227, 343, 400, 454, 549, 578, 605
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	4 cut(s)	280, 331, 513, 584
SsiI	CCGC	8 cut(s)	11, 38, 50, 65, 84, 195, 198, 201
SspMI	CTAG	2 cut(s)	258, 315
SstI	GAGCTC	2 cut(s)	146, 227
StyD4I	CCNGG	5 cut(s)	45, 60, 91, 146, 532
TaaI	ACNGT	2 cut(s)	181, 467
TaqI	TCGA	2 cut(s)	176, 284
TasI	AATT	4 cut(s)	280, 331, 513, 584
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	5 cut(s)	41, 53, 87, 198, 201
TfiI	GAWTC	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	314, 524
TspGWI	ACGGA	2 cut(s)	200, 310
XapI	RAATTY	2 cut(s)	280, 513
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	1 cut(s)	600
XspI	CTAG	2 cut(s)	258, 315
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.