Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

20656905 .. 20658423

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAATTCCGTTGTTGACAAAATGGATCCTCCACTGATCAACGAGTCTTCCTTCTCAGCAGCTAACCCGGCATCCTTCAGCCTGGCGGAGATTTGGCCCTTTAGCGGCGAACCCGGTGGCAGCGGTGGCGGGTTGGGGCTCCGAATGGGTAACTTGGGTCAGAGTTTGGGTGGGCTTGGAGATAGTTCTGTGAACAGAGATGGGTCGTTGGAGGAATCGACTGTGACTGAGCAAAGTGGCGGCGGTGGCGGAAGAAAGAGAAGGGATGTGAGCTCTGAGGACGAGTCTTCGAAGCAGGTTTCCACTAGTAGTGGCAATGGCTTGAAAGATTCGGGTGGAAAACGGATGAAATTAGCGGGATCCAGTAACGAAAATGGCAGTTTGAGGGCTGAAGTTGAAGAAAGTTCAGCTGCTGGTGACAACAAGCCAGCTGAAGAAAGCACTAAACCTTCCGAGCCACCCAAGCAAGACTTTATCCATGTGAGGGCAAGAAGGGGACAAGCTACAGATAGCCACAGTCTAGCCGAAAGAGCTAGGAGAGAGAAGATCAGCGAAAGGATGAAAATTCTCCAAGATTTGGTTCCTGGATGCAACAAGGTATTCAATTGGGAAAGCACTTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

209

Amino Acids

21.88

Weight (kDa)

5.39

Isoelectric Point (pI)

69.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	577
AciI	CCGC	8 cut(s)	86, 105, 123, 129, 240, 243, 249, 356
AclWI	GGATC	4 cut(s)	20, 33, 354, 367
AcsI	RAATTY	2 cut(s)	4, 564
AcuI	CTGAAG	3 cut(s)	61, 411, 453
AfiI	CCNNNNNNNGG	3 cut(s)	104, 484, 577
AgsI	TTSAA	3 cut(s)	325, 398, 604
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	81, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	6 cut(s)	62, 273, 410, 431, 503, 533
AluI	AGCT	6 cut(s)	62, 273, 410, 431, 503, 533
Alw21I	GWGCWC	1 cut(s)	275
AlwI	GGATC	4 cut(s)	20, 33, 354, 367
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	59, 120, 410
ApoI	RAATTY	2 cut(s)	4, 564
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	2 cut(s)	68, 114
AsuHPI	GGTGA	1 cut(s)	428
AsuII	TTCGAA	1 cut(s)	290
BamHI	GGATCC	2 cut(s)	25, 359
BanII	GRGCYC	2 cut(s)	141, 275
BbsI	GAAGAC	2 cut(s)	39, 279
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	71, 132, 397
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	83, 585
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	2 cut(s)	68, 114
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	3 cut(s)	306, 521, 534
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	5 cut(s)	60, 106, 121, 241, 411
BlsI	GCNGC	5 cut(s)	61, 107, 122, 242, 412
Bme1390I	CCNGG	4 cut(s)	68, 83, 114, 585
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	4 cut(s)	27, 140, 361, 582
BmrFI	CCNGG	4 cut(s)	68, 83, 114, 585
BmsI	GCATC	2 cut(s)	80, 578
BpiI	GAAGAC	2 cut(s)	39, 279
Bpu14I	TTCGAA	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	68, 114
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 484, 577
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	322
BseBI	CCWGG	2 cut(s)	83, 585
BseGI	GGATG	5 cut(s)	71, 271, 351, 564, 593
BseLI	CCNNNNNNNGG	3 cut(s)	104, 484, 577
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	3 cut(s)	69, 219, 267
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	71, 132, 397
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	68, 114
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	3 cut(s)	104, 484, 577
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	141, 275
Bsp143I	GATC	4 cut(s)	25, 36, 359, 546
BspACI	CCGC	8 cut(s)	86, 105, 123, 129, 240, 243, 249, 356
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	3 cut(s)	68, 220, 268
BspLI	GGNNCC	4 cut(s)	27, 140, 361, 582
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	4 cut(s)	20, 33, 354, 367
BspT104I	TTCGAA	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	4 cut(s)	25, 36, 359, 546
Bst2UI	CCWGG	2 cut(s)	83, 585
Bst4CI	ACNGT	2 cut(s)	223, 518
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	55, 228, 276
BstF5I	GGATG	5 cut(s)	71, 271, 351, 564, 593
BstKTI	GATC	4 cut(s)	28, 39, 362, 549
BstMBI	GATC	4 cut(s)	25, 36, 359, 546
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 126, 246, 463, 530
BstNI	CCWGG	2 cut(s)	83, 585
BstSCI	CCNGG	4 cut(s)	66, 81, 112, 583
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	3 cut(s)	71, 132, 397
BstV2I	GAAGAC	2 cut(s)	39, 279
BstX2I	RGATCY	2 cut(s)	25, 359
BstYI	RGATCY	2 cut(s)	25, 359
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	71, 271, 351, 564, 593
BtsIMutI	CAGTG	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	96
CviAII	CATG	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	55, 228, 276
DpnI	GATC	4 cut(s)	27, 38, 361, 548
DpnII	GATC	4 cut(s)	25, 36, 359, 546
EciI	GGCGGA	2 cut(s)	101, 264
Ecl136II	GAGCTC	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	141, 275
Eco53kI	GAGCTC	1 cut(s)	273
Eco57I	CTGAAG	3 cut(s)	61, 411, 453
EcoICRI	GAGCTC	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	81, 583
EcoT38I	GRGCYC	2 cut(s)	141, 275
FaeI	CATG	1 cut(s)	482
FaiI	YATR	1 cut(s)	480
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	1 cut(s)	478
FauI	CCCGC	2 cut(s)	122, 349
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	5 cut(s)	60, 106, 121, 241, 411
FokI	GGATG	5 cut(s)	58, 278, 358, 571, 600
FriOI	GRGCYC	2 cut(s)	141, 275
Fsp4HI	GCNGC	5 cut(s)	60, 106, 121, 241, 411
FspBI	CTAG	3 cut(s)	306, 521, 534
GluI	GCNGC	5 cut(s)	60, 106, 121, 241, 411
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	2 cut(s)	68, 114
Hin1II	CATG	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	4 cut(s)	44, 215, 284, 329
HpaII	CCGG	2 cut(s)	68, 114
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	16, 193
Hpy188I	TCNGA	4 cut(s)	143, 162, 277, 454
Hpy8I	GTNNAC	2 cut(s)	16, 193
HpyAV	CCTTC	5 cut(s)	61, 85, 255, 459, 486
HpyCH4III	ACNGT	2 cut(s)	223, 518
HpyCH4V	TGCA	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 126, 246, 463, 530
HpyF3I	CTNAG	3 cut(s)	55, 228, 276
Hsp92II	CATG	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	25, 36, 359, 546
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	3 cut(s)	71, 132, 397
LweI	GCATC	2 cut(s)	80, 578
MaeI	CTAG	3 cut(s)	306, 521, 534
MaeIII	GTNAC	4 cut(s)	149, 223, 365, 416
MalI	GATC	4 cut(s)	27, 38, 361, 548
MboI	GATC	4 cut(s)	25, 36, 359, 546
MboII	GAAGA	6 cut(s)	39, 264, 279, 410, 446, 556
MfeI	CAATTG	1 cut(s)	604
MflI	RGATCY	2 cut(s)	25, 359
MhlI	GDGCHC	2 cut(s)	141, 275
MluCI	AATT	4 cut(s)	4, 350, 564, 604
MlyI	GAGTC	2 cut(s)	53, 293
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	39, 205, 271, 378, 477
MspA1I	CMGCKG	3 cut(s)	123, 410, 431
MspI	CCGG	2 cut(s)	68, 114
MspR9I	CCNGG	4 cut(s)	68, 83, 114, 585
MunI	CAATTG	1 cut(s)	604
MvaI	CCWGG	2 cut(s)	83, 585
MwoI	GCNNNNNNNGC	5 cut(s)	68, 126, 246, 463, 530
NciI	CCSGG	2 cut(s)	68, 114
NdeII	GATC	4 cut(s)	25, 36, 359, 546
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	4 cut(s)	27, 140, 361, 582
NmuCI	GTSAC	2 cut(s)	223, 416
NspV	TTCGAA	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	215, 329
PflMI	CCANNNNNTGG	1 cut(s)	577
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	5 cut(s)	61, 107, 122, 242, 412
PleI	GAGTC	2 cut(s)	52, 292
PpsI	GAGTC	2 cut(s)	52, 292
Psp124BI	GAGCTC	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	81, 583
PspGI	CCWGG	2 cut(s)	81, 583
PspN4I	GGNNCC	4 cut(s)	27, 140, 361, 582
PspPI	GGNCC	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	2 cut(s)	25, 359
PvuII	CAGCTG	2 cut(s)	410, 431
SacI	GAGCTC	1 cut(s)	275
SatI	GCNGC	5 cut(s)	60, 106, 121, 241, 411
Sau3AI	GATC	4 cut(s)	25, 36, 359, 546
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	2 cut(s)	53, 293
ScrFI	CCNGG	4 cut(s)	68, 83, 114, 585
SduI	GDGCHC	2 cut(s)	141, 275
SetI	ASST	9 cut(s)	64, 275, 300, 412, 433, 451, 505, 535, 600
SfaNI	GCATC	2 cut(s)	80, 578
SfcI	CTRYAG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	4 cut(s)	4, 350, 564, 604
SsiI	CCGC	8 cut(s)	86, 105, 123, 129, 240, 243, 249, 356
SspMI	CTAG	3 cut(s)	306, 521, 534
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	4 cut(s)	66, 81, 112, 583
TaaI	ACNGT	2 cut(s)	223, 518
TaqI	TCGA	2 cut(s)	218, 290
TasI	AATT	4 cut(s)	4, 350, 564, 604
TauI	GCSGC	2 cut(s)	108, 243
TfiI	GAWTC	2 cut(s)	215, 329
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	223, 416
TseI	GCWGC	3 cut(s)	59, 120, 410
Tsp45I	GTSAC	2 cut(s)	223, 416
TspDTI	ATGAA	3 cut(s)	17, 362, 575
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	577
XapI	RAATTY	2 cut(s)	4, 564
XspI	CTAG	3 cut(s)	306, 521, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.