Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

9013636 .. 9017169

Gene Structure 3534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15930.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGATCCTCCACTTATCCACGACGCGTCTTTCTCGGCGGTGAACCCGGCGGCGTACAGCCTGGCGGAGATTTGGCCCTTCGGCGGCGAGCCCGGCGGGTTGGGCCTCCGAATGGGCAGTTTGGGCGGTGGGTTGGGAGAGAGCTCCGGGAATAGAGATGGGTCGTTGGAGGAGTCGACGGTGACGGAGCAGAGCGGCGGCGGAGGAAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAGTCTTCTAAGATTGTTTCTACTAGTAGTGCTGATGGCTTGAAGGATTCGAGTGGAAAACGGATGAAGTTAGAGGGAGCTAGAAATGAAAACGGCAAGTCTAAAGCTGAAGTTGAAACAAGTTCAGAGGCTGGTGATAAGCGAGATGAACAGAGCACTAAACCTTCTGAGCCACCAAAGCAGGATTATATCCATGTGAGGGCGAGAAGAGGCCAAGCTACCGATAGCCACAGTCTTGCAGAGAGAGCAAGGAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTCCTCGATGAGATTATTAATTACATCCAGTCACTGCAGCGTCAAGTCGAGCTTGAGGCGGTCAATTCAAGGGTGAACATGAATCCCACCATTGAAGTCTTTCCTTCAAAAGATCTTAATGCGCAGCAATTTGATGCAGCCGCGTTGTTATTTGGATCACACACACCAAGGGAGTATGCACAGGGCTCGCAAGCTGAATGGCTGCATATGCAGGTTGGTGGTAGCTTTGAAAGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

270

Amino Acids

29.07

Weight (kDa)

5.54

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	690
Acc36I	ACCTGC	1 cut(s)	769
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	2 cut(s)	26, 710
AclWI	GGATC	2 cut(s)	12, 730
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	83, 112, 436
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	7 cut(s)	280, 353, 524, 636, 662, 675, 797
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	2 cut(s)	60, 535
AluBI	AGCT	8 cut(s)	144, 228, 317, 344, 455, 619, 761, 792
AluI	AGCT	8 cut(s)	144, 228, 317, 344, 455, 619, 761, 792
Alw21I	GWGCWC	3 cut(s)	146, 230, 395
AlwI	GGATC	2 cut(s)	12, 730
AlwNI	CAGNNNCTG	2 cut(s)	368, 601
AoxI	GGCC	3 cut(s)	74, 103, 448
ApeKI	GCWGC	4 cut(s)	604, 691, 704, 769
ApoI	RAATTY	1 cut(s)	516
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	2 cut(s)	75, 103
AsuC2I	CCSGG	3 cut(s)	47, 93, 148
AsuHPI	GGTGA	4 cut(s)	52, 193, 383, 652
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	4 cut(s)	93, 146, 230, 755
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	3 cut(s)	146, 230, 395
BbvI	GCAGC	4 cut(s)	616, 703, 716, 756
BccI	CCATC	2 cut(s)	152, 266
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	2 cut(s)	62, 537
BcnI	CCSGG	3 cut(s)	47, 93, 148
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	261, 318
BfmI	CTRYAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	769
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	9 cut(s)	51, 85, 196, 199, 605, 692, 705, 708, 770
BlsI	GCNGC	9 cut(s)	52, 86, 197, 200, 606, 693, 706, 709, 771
Bme1390I	CCNGG	5 cut(s)	47, 62, 93, 148, 537
BmgT120I	GGNCC	2 cut(s)	75, 103
BmiI	GGNNCC	2 cut(s)	6, 534
BmrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 537
BmsI	GCATC	1 cut(s)	691
BpiI	GAAGAC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	641
BpuMI	CCSGG	3 cut(s)	47, 93, 148
BsaJI	CCNNGG	2 cut(s)	231, 734
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 112, 436
Bse1I	ACTGG	1 cut(s)	595
BseBI	CCWGG	2 cut(s)	62, 537
BseDI	CCNNGG	2 cut(s)	231, 734
BseGI	GGATG	6 cut(s)	226, 241, 306, 516, 545, 591
BseLI	CCNNNNNNNGG	3 cut(s)	83, 112, 436
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	616, 703, 716, 756
Bsh1236I	CGCG	2 cut(s)	26, 710
BshFI	GGCC	3 cut(s)	76, 105, 450
BsiHKAI	GWGCWC	3 cut(s)	146, 230, 395
BsiSI	CCGG	3 cut(s)	47, 93, 147
BslI	CCNNNNNNNGG	3 cut(s)	83, 112, 436
BsnI	GGCC	3 cut(s)	76, 105, 450
Bsp1286I	GDGCHC	5 cut(s)	93, 146, 230, 395, 755
Bsp143I	GATC	4 cut(s)	4, 498, 679, 722
BspANI	GGCC	3 cut(s)	76, 105, 450
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	26, 710
BspLI	GGNNCC	2 cut(s)	6, 534
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	769
BspPI	GGATC	2 cut(s)	12, 730
BsrBI	CCGCTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	231, 734
BssMI	GATC	4 cut(s)	4, 498, 679, 722
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	2 cut(s)	62, 537
Bst4CI	ACNGT	2 cut(s)	181, 470
Bst6I	CTCTTC	2 cut(s)	206, 439
BstC8I	GCNNGC	3 cut(s)	89, 755, 759
BstDEI	CTNAG	2 cut(s)	246, 405
BstF5I	GGATG	6 cut(s)	226, 241, 306, 516, 545, 591
BstFNI	CGCG	2 cut(s)	26, 710
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	4 cut(s)	7, 501, 682, 725
BstMBI	GATC	4 cut(s)	4, 498, 679, 722
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 102, 123, 415, 482, 775
BstNI	CCWGG	2 cut(s)	62, 537
BstSCI	CCNGG	5 cut(s)	45, 60, 91, 146, 535
BstSFI	CTRYAG	1 cut(s)	602
BstUI	CGCG	2 cut(s)	26, 710
BstV1I	GCAGC	4 cut(s)	616, 703, 716, 756
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	4, 679
BstYI	RGATCY	2 cut(s)	4, 679
BsuRI	GGCC	3 cut(s)	76, 105, 450
BtsCI	GGATG	6 cut(s)	226, 241, 306, 516, 545, 591
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	2 cut(s)	508, 599
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	3 cut(s)	89, 755, 759
CaiI	CAGNNNCTG	2 cut(s)	368, 601
CfoI	GCGC	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	75, 103
CseI	GACGC	3 cut(s)	15, 32, 596
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	431, 646
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	2 cut(s)	246, 405
DpnI	GATC	4 cut(s)	6, 500, 681, 724
DpnII	GATC	4 cut(s)	4, 498, 679, 722
Eam1104I	CTCTTC	2 cut(s)	206, 439
EarI	CTCTTC	2 cut(s)	206, 439
EciI	GGCGGA	2 cut(s)	80, 216
Ecl136II	GAGCTC	2 cut(s)	144, 228
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	4 cut(s)	93, 146, 230, 755
Eco53kI	GAGCTC	2 cut(s)	144, 228
Eco57I	CTGAAG	1 cut(s)	366
EcoICRI	GAGCTC	2 cut(s)	144, 228
EcoRII	CCWGG	2 cut(s)	60, 535
EcoT14I	CCWWGG	1 cut(s)	734
EcoT38I	GRGCYC	4 cut(s)	93, 146, 230, 755
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	2 cut(s)	434, 649
FaiI	YATR	7 cut(s)	426, 432, 647, 744, 774, 776, 808
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FatI	CATG	2 cut(s)	430, 645
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	774
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	9 cut(s)	51, 85, 196, 199, 605, 692, 705, 708, 770
FokI	GGATG	6 cut(s)	233, 248, 313, 523, 552, 578
FriOI	GRGCYC	4 cut(s)	93, 146, 230, 755
Fsp4HI	GCNGC	9 cut(s)	51, 85, 196, 199, 605, 692, 705, 708, 770
FspBI	CTAG	2 cut(s)	261, 318
FspI	TGCGCA	1 cut(s)	690
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	9 cut(s)	51, 85, 196, 199, 605, 692, 705, 708, 770
HaeIII	GGCC	3 cut(s)	76, 105, 450
HapII	CCGG	3 cut(s)	47, 93, 147
HgaI	GACGC	3 cut(s)	15, 32, 596
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	2 cut(s)	434, 649
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	4 cut(s)	173, 239, 284, 649
HpaII	CCGG	3 cut(s)	47, 93, 147
HphI	GGTGA	4 cut(s)	52, 193, 383, 652
Hpy166II	GTNNAC	3 cut(s)	43, 177, 643
Hpy188I	TCNGA	4 cut(s)	110, 232, 364, 406
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	3 cut(s)	43, 177, 643
Hpy99I	CGWCG	2 cut(s)	26, 181
HpyAV	CCTTC	6 cut(s)	88, 201, 211, 274, 411, 681
HpyCH4III	ACNGT	2 cut(s)	181, 470
HpyCH4V	TGCA	6 cut(s)	476, 604, 704, 746, 772, 778
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 102, 123, 415, 482, 775
HpyF3I	CTNAG	2 cut(s)	246, 405
Hsp92II	CATG	2 cut(s)	434, 649
HspAI	GCGC	1 cut(s)	689
Kzo9I	GATC	4 cut(s)	4, 498, 679, 722
LmnI	GCTCC	4 cut(s)	149, 187, 233, 314
Lsp1109I	GCAGC	4 cut(s)	616, 703, 716, 756
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	2 cut(s)	261, 318
MaeIII	GTNAC	2 cut(s)	181, 597
MalI	GATC	4 cut(s)	6, 500, 681, 724
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	4 cut(s)	4, 498, 679, 722
MboII	GAAGA	4 cut(s)	223, 234, 456, 512
MflI	RGATCY	2 cut(s)	4, 679
MhlI	GDGCHC	5 cut(s)	93, 146, 230, 395, 755
MluCI	AATT	4 cut(s)	516, 586, 631, 695
MluI	ACGCGT	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	182, 248
MmeI	TCCRAC	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	2 cut(s)	585, 684
MspI	CCGG	3 cut(s)	47, 93, 147
MspR9I	CCNGG	5 cut(s)	47, 62, 93, 148, 537
MvaI	CCWGG	2 cut(s)	62, 537
MvnI	CGCG	2 cut(s)	26, 710
MwoI	GCNNNNNNNGC	6 cut(s)	93, 102, 123, 415, 482, 775
NciI	CCSGG	3 cut(s)	47, 93, 148
NdeI	CATATG	1 cut(s)	774
NdeII	GATC	4 cut(s)	4, 498, 679, 722
NlaIII	CATG	2 cut(s)	434, 649
NlaIV	GGNNCC	2 cut(s)	6, 534
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	181, 597
NsbI	TGCGCA	1 cut(s)	690
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	284, 649
PfoI	TCCNGGA	2 cut(s)	146, 535
PkrI	GCNGC	9 cut(s)	52, 86, 197, 200, 606, 693, 706, 709, 771
PleI	GAGTC	2 cut(s)	181, 247
PpsI	GAGTC	2 cut(s)	181, 247
PshBI	ATTAAT	1 cut(s)	585
Psp124BI	GAGCTC	2 cut(s)	146, 230
Psp6I	CCWGG	2 cut(s)	60, 535
PspGI	CCWGG	2 cut(s)	60, 535
PspN4I	GGNNCC	2 cut(s)	6, 534
PspPI	GGNCC	2 cut(s)	75, 103
PstI	CTGCAG	1 cut(s)	606
PstNI	CAGNNNCTG	2 cut(s)	368, 601
PsuI	RGATCY	2 cut(s)	4, 679
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	2 cut(s)	146, 230
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	585, 684
SatI	GCNGC	9 cut(s)	51, 85, 196, 199, 605, 692, 705, 708, 770
Sau3AI	GATC	4 cut(s)	4, 498, 679, 722
Sau96I	GGNCC	2 cut(s)	75, 103
SchI	GAGTC	2 cut(s)	182, 248
ScrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 537
SduI	GDGCHC	5 cut(s)	93, 146, 230, 395, 755
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	4 cut(s)	516, 586, 631, 695
SspMI	CTAG	2 cut(s)	261, 318
SstI	GAGCTC	2 cut(s)	146, 230
StyD4I	CCNGG	5 cut(s)	45, 60, 91, 146, 535
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	2 cut(s)	181, 470
TaqI	TCGA	4 cut(s)	176, 287, 573, 615
TasI	AATT	4 cut(s)	516, 586, 631, 695
TauI	GCSGC	5 cut(s)	53, 87, 198, 201, 710
TfiI	GAWTC	2 cut(s)	284, 649
Tru1I	TTAA	2 cut(s)	585, 684
Tru9I	TTAA	2 cut(s)	585, 684
TscAI	CASTG	2 cut(s)	508, 606
TseFI	GTSAC	2 cut(s)	181, 597
TseI	GCWGC	4 cut(s)	604, 691, 704, 769
Tsp45I	GTSAC	2 cut(s)	181, 597
TspDTI	ATGAA	5 cut(s)	317, 339, 399, 527, 662
TspGWI	ACGGA	2 cut(s)	200, 313
TspRI	CASTG	2 cut(s)	508, 606
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	1 cut(s)	516
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	2 cut(s)	261, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.