Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

25836929 .. 25840248

Gene Structure 3320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44503

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTTTCTACTAGTAGTGCTAATGGCTTGAAATATTCGAGTGGGAAACGGATGAAGTTAGAGGGATCTAGAAACGAAAACGGCAATTCTAAAGCTGAAGTTGAAACAAGTTCAGGGGCTGATGACAAGCCAGAGGAACAAAGTACTAAACCTTCTGAGCCACCCAAGCAAGATTATATCCATGTGAGGGGAAGGAGAGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATATAATAAGGTTATTGGGAAAGCACTTGTTCTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACATTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGCGTTTCCTTCAAAAGATGTGTTTTTTCCTAGTGCACAGCAATTTGATGCAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCGAATGGTTGCATATGCAGGTTGGTGGTTGTCTTGATTTTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

179

Amino Acids

19.92

Weight (kDa)

6.32

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	63 - 104	2.6e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	64 - 107	1.2e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	499
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	222
AcuI	CTGAAG	2 cut(s)	117, 212
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	7 cut(s)	31, 104, 337, 344, 357, 383, 396
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	2 cut(s)	95, 437
AluI	AGCT	2 cut(s)	95, 437
Alw21I	GWGCWC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	73
AlwNI	CAGNNNCTG	2 cut(s)	119, 307
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	3 cut(s)	310, 434, 437
ApoI	RAATTY	1 cut(s)	222
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	485
BarI	GAAGNNNNNNTAC	2 cut(s)	136, 168
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	3 cut(s)	322, 424, 446
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	243
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	3 cut(s)	12, 69, 414
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	3 cut(s)	311, 435, 438
BlsI	GCNGC	3 cut(s)	312, 436, 439
BmcAI	AGTACT	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	464
BseGI	GGATG	3 cut(s)	57, 222, 297
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	3 cut(s)	322, 424, 446
BsgI	GTGCAG	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	421, 485
Bsp143I	GATC	2 cut(s)	65, 204
BspACI	CCGC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	2 cut(s)	65, 204
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	485, 489
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	57, 222, 297
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	68, 207
BstMBI	GATC	2 cut(s)	65, 204
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 383, 484
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	3 cut(s)	322, 424, 446
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	57, 222, 297
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	2 cut(s)	485, 489
CaiI	CAGNNNCTG	2 cut(s)	119, 307
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	182, 367
CviJI	RGCY	9 cut(s)	27, 95, 119, 130, 160, 210, 437, 483, 491
CviKI_1	RGCY	9 cut(s)	27, 95, 119, 130, 160, 210, 437, 483, 491
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	67, 206
DpnII	GATC	2 cut(s)	65, 204
Eco130I	CCWWGG	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	117, 212
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	2 cut(s)	185, 370
FaiI	YATR	8 cut(s)	177, 183, 249, 368, 474, 504, 506, 538
FatI	CATG	2 cut(s)	181, 366
FauI	CCCGC	1 cut(s)	382
FauNDI	CATATG	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	311, 435, 438
FokI	GGATG	3 cut(s)	64, 229, 284
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	311, 435, 438
FspBI	CTAG	3 cut(s)	12, 69, 414
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	3 cut(s)	311, 435, 438
HaeII	RGCGCY	1 cut(s)	316
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	185, 370
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	1 cut(s)	370
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	364, 419
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	69, 230, 278, 524
Hpy8I	GTNNAC	2 cut(s)	364, 419
HpyAV	CCTTC	3 cut(s)	162, 186, 402
HpyCH4V	TGCA	6 cut(s)	310, 419, 434, 478, 502, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 383, 484
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	185, 370
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	65, 204
LpnPI	CCDG	9 cut(s)	99, 144, 215, 224, 228, 255, 314, 464, 494
Lsp1109I	GCAGC	3 cut(s)	322, 424, 446
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	3 cut(s)	12, 69, 414
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	2 cut(s)	67, 206
MboI	GATC	2 cut(s)	65, 204
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	421, 485
MluCI	AATT	5 cut(s)	85, 222, 292, 352, 425
MnlI	CCTC	4 cut(s)	55, 127, 180, 207
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	166, 383, 484
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	2 cut(s)	65, 204
NlaIII	CATG	2 cut(s)	185, 370
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	303
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	312, 436, 439
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	2 cut(s)	119, 307
PsuI	RGATCY	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	311, 435, 438
Sau3AI	GATC	2 cut(s)	65, 204
Sau96I	GGNCC	1 cut(s)	452
ScaI	AGTACT	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	421, 485
SetI	ASST	5 cut(s)	97, 154, 258, 439, 513
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	452
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	5 cut(s)	85, 222, 292, 352, 425
SsiI	CCGC	1 cut(s)	375
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	3 cut(s)	12, 69, 414
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	464
TaqI	TCGA	2 cut(s)	38, 321
TasI	AATT	5 cut(s)	85, 222, 292, 352, 425
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	3 cut(s)	310, 434, 437
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	4 cut(s)	68, 233, 383, 525
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	312
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	3 cut(s)	12, 69, 414
ZrmI	AGTACT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.