Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

18294589 .. 18296041

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGATCCTCCACTGATCAACGAGTCTTCCTCCTCAGTAGCTAACCCAGCATCCTACAGCCTGGCAGAGATTTGGCCCTTCAGCGGCGAACCGGGTGGCAGTGGTGGAGGGTTGGGGCTCCGAGTGGGTAACTTGGGTCAGAGTATGGGTGGGCTTGGAGATAGCTCTGTGAACAGAGATGGGTCGTTGGAGGAATCGACTGTGACTGAGCAAAGCGGCGGCGGCGGTGGTAGAAGGAAGAGAAGGGATGTGAACTTTGAGGACGAGTCTTCGAAGCGGGTTTCCACTCGTAGTGGCAATGGCTTGAAAGATTTGGGTAAACGGATGAAATTAGCGGTATCCAGAAACGAAAATGACAATTTGAAGGCTGAAGTTGAAGAAAGTTCAGCTGCTGGCGACAACAAGCCAGCTGAAGAAAGCACTAAACCTTCCGAGCCACCCAAGCAAGACTATATCCATGTGAGGGCAAGAAGGGGCCAAGCTACAGATAGCCACAGTCTAGCCGAGAGAGCTAGGAGAGAGAAGATCAGCGAAAGGATGAAAGTTCTCCAAGATTTGGTTCCCGGATGCAATAAGGTATTCGATTGGGAAAGCACTCGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

202

Amino Acids

21.61

Weight (kDa)

6.21

Isoelectric Point (pI)

74.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	556
AciI	CCGC	7 cut(s)	84, 216, 219, 222, 225, 277, 335
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	3 cut(s)	64, 390, 432
AfiI	CCNNNNNNNGG	3 cut(s)	83, 463, 556
AgsI	TTSAA	3 cut(s)	307, 364, 377
AjnI	CCWGG	1 cut(s)	60
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	6 cut(s)	41, 165, 389, 410, 482, 512
AluI	AGCT	6 cut(s)	41, 165, 389, 410, 482, 512
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	74, 475
ApeKI	GCWGC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	75, 475
AsuC2I	CCSGG	2 cut(s)	93, 564
AsuII	TTCGAA	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	18, 261
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	2 cut(s)	93, 564
BfaI	CTAG	2 cut(s)	500, 513
BfmI	CTRYAG	2 cut(s)	55, 483
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	5 cut(s)	85, 217, 220, 223, 390
BlsI	GCNGC	5 cut(s)	86, 218, 221, 224, 391
Bme1390I	CCNGG	3 cut(s)	62, 93, 564
BmgT120I	GGNCC	2 cut(s)	75, 475
BmiI	GGNNCC	4 cut(s)	6, 119, 476, 561
BmrFI	CCNGG	3 cut(s)	62, 93, 564
BmsI	GCATC	2 cut(s)	59, 557
BpiI	GAAGAC	2 cut(s)	18, 261
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu14I	TTCGAA	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	93, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 463, 556
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	62
BseGI	GGATG	5 cut(s)	50, 253, 330, 543, 572
BseLI	CCNNNNNNNGG	3 cut(s)	83, 463, 556
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	48, 198
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	46
BshFI	GGCC	2 cut(s)	76, 477
BsiSI	CCGG	2 cut(s)	92, 564
BslI	CCNNNNNNNGG	3 cut(s)	83, 463, 556
BsnI	GGCC	2 cut(s)	76, 477
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	4, 15, 525
BspACI	CCGC	7 cut(s)	84, 216, 219, 222, 225, 277, 335
BspANI	GGCC	2 cut(s)	76, 477
BspCNI	CTCAG	2 cut(s)	47, 199
BspLI	GGNNCC	4 cut(s)	6, 119, 476, 561
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	304
BssMI	GATC	3 cut(s)	4, 15, 525
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	202, 497
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	394, 408
BstDEI	CTNAG	2 cut(s)	34, 207
BstF5I	GGATG	5 cut(s)	50, 253, 330, 543, 572
BstKTI	GATC	3 cut(s)	7, 18, 528
BstMBI	GATC	3 cut(s)	4, 15, 525
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 222, 442, 509
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	3 cut(s)	60, 91, 562
BstSFI	CTRYAG	2 cut(s)	55, 483
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	2 cut(s)	18, 261
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	76, 477
BtsCI	GGATG	5 cut(s)	50, 253, 330, 543, 572
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	11, 106
Cac8I	GCNNGC	2 cut(s)	394, 408
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	75, 475
CviAII	CATG	1 cut(s)	458
DdeI	CTNAG	2 cut(s)	34, 207
DpnI	GATC	3 cut(s)	6, 17, 527
DpnII	GATC	3 cut(s)	4, 15, 525
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	120
Eco57I	CTGAAG	3 cut(s)	64, 390, 432
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	120
FaeI	CATG	1 cut(s)	461
FaiI	YATR	3 cut(s)	146, 453, 459
FatI	CATG	1 cut(s)	457
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	5 cut(s)	85, 217, 220, 223, 390
FokI	GGATG	5 cut(s)	37, 260, 337, 550, 579
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	5 cut(s)	85, 217, 220, 223, 390
FspBI	CTAG	2 cut(s)	500, 513
GluI	GCNGC	5 cut(s)	85, 217, 220, 223, 390
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	76, 477
HapII	CCGG	2 cut(s)	92, 564
Hin1II	CATG	1 cut(s)	461
HinfI	GANTC	3 cut(s)	23, 194, 266
HpaII	CCGG	2 cut(s)	92, 564
Hpy166II	GTNNAC	3 cut(s)	172, 253, 320
Hpy188I	TCNGA	3 cut(s)	122, 141, 433
Hpy188III	TCNNGA	1 cut(s)	342
Hpy8I	GTNNAC	3 cut(s)	172, 253, 320
HpyAV	CCTTC	6 cut(s)	88, 228, 237, 358, 438, 465
HpyCH4III	ACNGT	2 cut(s)	202, 497
HpyCH4V	TGCA	1 cut(s)	570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 222, 442, 509
HpyF3I	CTNAG	2 cut(s)	34, 207
Hsp92II	CATG	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	4, 15, 525
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	8 cut(s)	47, 60, 74, 105, 355, 378, 420, 577
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	59, 557
MaeI	CTAG	2 cut(s)	500, 513
MaeIII	GTNAC	2 cut(s)	128, 202
MalI	GATC	3 cut(s)	6, 17, 527
MboI	GATC	3 cut(s)	4, 15, 525
MboII	GAAGA	6 cut(s)	18, 250, 261, 389, 425, 535
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	329, 358
MlyI	GAGTC	2 cut(s)	32, 275
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	18, 40, 43, 101, 184, 253, 456
MspA1I	CMGCKG	3 cut(s)	84, 389, 410
MspI	CCGG	2 cut(s)	92, 564
MspR9I	CCNGG	3 cut(s)	62, 93, 564
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	47, 222, 442, 509
NciI	CCSGG	2 cut(s)	93, 564
NdeII	GATC	3 cut(s)	4, 15, 525
NlaIII	CATG	1 cut(s)	461
NlaIV	GGNNCC	4 cut(s)	6, 119, 476, 561
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	556
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	5 cut(s)	86, 218, 221, 224, 391
PleI	GAGTC	2 cut(s)	31, 274
PpsI	GAGTC	2 cut(s)	31, 274
Psp6I	CCWGG	1 cut(s)	60
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	6, 119, 476, 561
PspPI	GGNCC	2 cut(s)	75, 475
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	2 cut(s)	389, 410
SatI	GCNGC	5 cut(s)	85, 217, 220, 223, 390
Sau3AI	GATC	3 cut(s)	4, 15, 525
Sau96I	GGNCC	2 cut(s)	75, 475
SchI	GAGTC	2 cut(s)	32, 275
ScrFI	CCNGG	3 cut(s)	62, 93, 564
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	8 cut(s)	43, 167, 391, 412, 430, 484, 514, 579
SfaNI	GCATC	2 cut(s)	59, 557
SfcI	CTRYAG	2 cut(s)	55, 483
SfuI	TTCGAA	1 cut(s)	272
Sse9I	AATT	2 cut(s)	329, 358
SsiI	CCGC	7 cut(s)	84, 216, 219, 222, 225, 277, 335
SspMI	CTAG	2 cut(s)	500, 513
StyD4I	CCNGG	3 cut(s)	60, 91, 562
TaaI	ACNGT	2 cut(s)	202, 497
TaqI	TCGA	3 cut(s)	197, 272, 582
TasI	AATT	2 cut(s)	329, 358
TauI	GCSGC	4 cut(s)	87, 219, 222, 225
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	2 cut(s)	18, 106
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	341, 554
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	18, 106
Van91I	CCANNNNNTGG	1 cut(s)	556
XspI	CTAG	2 cut(s)	500, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.