Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

26113410 .. 26115049

Gene Structure 1640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37699

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTCTTTGTTATTCAGGGAAATGCTTCCTCTGGCATGGGTGTTGCTGAGGACTGCTGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTGTGGTAGAAAAGACTAGAGGCCCAGCTGAAAGTTATGATGATTTCACTGGTTCATTGCCTGAAAATGATTGCCGATATGCAATCTATGACTTTGATTTTGTCACTTCAGAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCCCGGTTTGTTTCTTTTGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGTGTTTCCTTCAAAAGATCAATTTGATGCAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGGTTGGTGGTAGCTTTGAAAGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

205

Amino Acids

23.33

Weight (kDa)

5.54

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	12 - 107	7.7e-20	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AciI	CCGC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	228, 311
AgsI	TTSAA	7 cut(s)	299, 436, 443, 456, 482, 495, 605
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	164, 515, 600
AluI	AGCT	3 cut(s)	164, 515, 600
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	90, 157
ApeKI	GCWGC	5 cut(s)	57, 409, 512, 515, 577
ApoI	RAATTY	1 cut(s)	321
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	2 cut(s)	25, 486
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	158, 530
AsuC2I	CCSGG	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	563
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	5 cut(s)	44, 421, 502, 524, 564
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	283
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	2 cut(s)	77, 407
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	577
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	5 cut(s)	58, 410, 513, 516, 578
BlsI	GCNGC	5 cut(s)	59, 411, 514, 517, 579
Bme1390I	CCNGG	2 cut(s)	283, 342
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	158, 530
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	283, 342
BmsI	GCATC	1 cut(s)	499
Bpu10I	CCTNAGC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	190, 400
Bse3DI	GCAATG	2 cut(s)	191, 276
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	3 cut(s)	321, 350, 396
BseMI	GCAATG	2 cut(s)	191, 276
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	190, 400
BseXI	GCAGC	5 cut(s)	44, 421, 502, 524, 564
BseYI	CCCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	92, 159
BsiSI	CCGG	1 cut(s)	283
BsnI	GGCC	2 cut(s)	92, 159
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	3 cut(s)	267, 303, 499
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	2 cut(s)	92, 159
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	2 cut(s)	81, 411
BspMI	ACCTGC	1 cut(s)	577
BspQI	GCTCTTC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	191, 276
BsrI	ACTGG	2 cut(s)	190, 400
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	3 cut(s)	267, 303, 499
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	563, 567
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	321, 350, 396
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	3 cut(s)	270, 306, 502
BstMBI	GATC	3 cut(s)	267, 303, 499
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 562, 583
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	281, 340
BstSFI	CTRYAG	2 cut(s)	77, 407
BstV1I	GCAGC	5 cut(s)	44, 421, 502, 524, 564
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	92, 159
BtsCI	GGATG	3 cut(s)	321, 350, 396
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	183, 404
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	563, 567
CaiI	CAGNNNCTG	1 cut(s)	406
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	158, 530
CviAII	CATG	2 cut(s)	37, 466
CviJI	RGCY	9 cut(s)	92, 159, 164, 309, 515, 561, 569, 577, 600
CviKI_1	RGCY	9 cut(s)	92, 159, 164, 309, 515, 561, 569, 577, 600
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	3 cut(s)	269, 305, 501
DpnII	GATC	3 cut(s)	267, 303, 499
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	542
Eco147I	AGGCCT	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	530
Eco57I	CTGAAG	2 cut(s)	228, 311
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	2 cut(s)	40, 469
FalI	AAGNNNNNCTT	4 cut(s)	77, 109, 257, 289
FatI	CATG	2 cut(s)	36, 465
FauI	CCCGC	1 cut(s)	481
FauNDI	CATATG	1 cut(s)	582
Fnu4HI	GCNGC	5 cut(s)	58, 410, 513, 516, 578
FokI	GGATG	3 cut(s)	328, 357, 383
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	5 cut(s)	58, 410, 513, 516, 578
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	5 cut(s)	58, 410, 513, 516, 578
GsaI	CCCAGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	92, 159
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	2 cut(s)	40, 469
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	469
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	82, 501
HpyCH4V	TGCA	8 cut(s)	60, 79, 218, 409, 512, 556, 580, 586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 562, 583
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	40, 469
HspAI	GCGC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	267, 303, 499
LguI	GCTCTTC	1 cut(s)	254
Lsp1109I	GCAGC	5 cut(s)	44, 421, 502, 524, 564
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	153
MaeIII	GTNAC	2 cut(s)	238, 402
MalI	GATC	3 cut(s)	269, 305, 501
MboI	GATC	3 cut(s)	267, 303, 499
MboII	GAAGA	6 cut(s)	136, 139, 262, 265, 271, 317
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	5 cut(s)	250, 321, 391, 451, 503
MnlI	CCTC	5 cut(s)	40, 43, 127, 149, 306
MroXI	GAANNNNTTC	2 cut(s)	25, 486
MseI	TTAA	2 cut(s)	111, 390
MslI	CAYNNNNRTG	1 cut(s)	482
MspA1I	CMGCKG	2 cut(s)	164, 515
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	2 cut(s)	283, 342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	261, 562, 583
NciI	CCSGG	1 cut(s)	283
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	3 cut(s)	267, 303, 499
NlaIII	CATG	2 cut(s)	40, 469
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	238, 402
PceI	AGGCCT	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	254
PdmI	GAANNNNTTC	2 cut(s)	25, 486
PfeI	GAWTC	1 cut(s)	469
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	5 cut(s)	59, 411, 514, 517, 579
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	2 cut(s)	158, 530
PstI	CTGCAG	2 cut(s)	81, 411
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	267
PvuII	CAGCTG	2 cut(s)	164, 515
RseI	CAYNNNNRTG	1 cut(s)	482
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	111, 390
SatI	GCNGC	5 cut(s)	58, 410, 513, 516, 578
Sau3AI	GATC	3 cut(s)	267, 303, 499
Sau96I	GGNCC	2 cut(s)	158, 530
ScrFI	CCNGG	2 cut(s)	283, 342
SduI	GDGCHC	1 cut(s)	563
SetI	ASST	7 cut(s)	138, 166, 357, 441, 517, 591, 602
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	2 cut(s)	77, 407
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	250, 321, 391, 451, 503
SseBI	AGGCCT	1 cut(s)	92
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	281, 340
StyI	CCWWGG	1 cut(s)	542
TaqI	TCGA	1 cut(s)	420
TasI	AATT	5 cut(s)	250, 321, 391, 451, 503
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	2 cut(s)	111, 390
Tru9I	TTAA	2 cut(s)	111, 390
TscAI	CASTG	2 cut(s)	190, 411
TseFI	GTSAC	2 cut(s)	238, 402
TseI	GCWGC	5 cut(s)	57, 409, 512, 515, 577
Tsp45I	GTSAC	2 cut(s)	238, 402
TspDTI	ATGAA	4 cut(s)	180, 265, 332, 482
TspRI	CASTG	2 cut(s)	190, 411
VpaK11BI	GGWCC	1 cut(s)	530
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	1 cut(s)	321
XmnI	GAANNNNTTC	2 cut(s)	25, 486
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.