Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

25132841 .. 25136065

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTTCTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCCGTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACGTCTCCGCGGCTGAGGAATCTACAGTCACCGATCTAACTGCTGGCTGGGGAAGTAGAAAGACTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTAATGAATTGAAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATGGAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGGAAGCAAAGCAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAAGAGGACAAGCTACTGACCGGCATAGTTTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTGAGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCCTTGTGCTCGATGAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTATCAATGAAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAGGAGTTTTTCCTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAGAAGCTAATGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACTTTAACCGAACCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043565 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048444 GO:0048446 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

281

Amino Acids

30.57

Weight (kDa)

5.83

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	163 - 210	1.3e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	168 - 213	9.8e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	805
AccII	CGCG	1 cut(s)	179
AciI	CCGC	3 cut(s)	177, 179, 631
AclWI	GGATC	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	393
AcyI	GRCGYC	2 cut(s)	93, 171
AfaI	GTAC	1 cut(s)	685
AfiI	CCNNNNNNNGG	3 cut(s)	72, 698, 814
AgsI	TTSAA	4 cut(s)	244, 264, 301, 548
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	559
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	7 cut(s)	41, 119, 479, 509, 542, 658, 773
AluI	AGCT	7 cut(s)	41, 119, 479, 509, 542, 658, 773
Alw21I	GWGCWC	1 cut(s)	597
Alw26I	GTCTC	3 cut(s)	113, 178, 361
AlwI	GGATC	1 cut(s)	343
Ama87I	CYCGRG	3 cut(s)	673, 722, 783
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	38, 282, 628
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AspS9I	GGNCC	2 cut(s)	4, 689
AsuHPI	GGTGA	2 cut(s)	190, 728
AvaI	CYCGRG	3 cut(s)	673, 722, 783
AvaII	GGWCC	2 cut(s)	4, 689
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
Bbv12I	GWGCWC	1 cut(s)	597
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	50, 294, 640
BccI	CCATC	3 cut(s)	262, 350, 815
BceAI	ACGGC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	3 cut(s)	113, 178, 361
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	4 cut(s)	14, 234, 510, 659
BfmI	CTRYAG	2 cut(s)	36, 192
BfuAI	ACCTGC	1 cut(s)	805
BisI	GCNGC	5 cut(s)	39, 180, 283, 629, 632
BlsI	GCNGC	5 cut(s)	40, 181, 284, 630, 633
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	2 cut(s)	4, 689
BmeT110I	CYCGRG	3 cut(s)	673, 722, 783
BmgT120I	GGNCC	2 cut(s)	4, 689
BmiI	GGNNCC	2 cut(s)	6, 806
BmrFI	CCNGG	1 cut(s)	561
Bpu10I	CCTNAGC	2 cut(s)	183, 432
BsaHI	GRCGYC	2 cut(s)	93, 171
BsaI	GGTCTC	2 cut(s)	113, 361
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	3 cut(s)	128, 713, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 47, 77
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 698, 814
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	259, 569
BseLI	CCNNNNNNNGG	3 cut(s)	72, 698, 814
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	3 cut(s)	174, 240, 423
BseNI	ACTGG	1 cut(s)	691
BseXI	GCAGC	3 cut(s)	50, 294, 640
BseYI	CCCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	597
BsiHKCI	CYCGRG	3 cut(s)	673, 722, 783
BsiSI	CCGG	5 cut(s)	129, 159, 487, 714, 797
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	3 cut(s)	72, 698, 814
BsmAI	GTCTC	3 cut(s)	113, 178, 361
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	739
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	2 cut(s)	113, 361
BsoBI	CYCGRG	3 cut(s)	673, 722, 783
Bsp1286I	GDGCHC	1 cut(s)	597
Bsp143I	GATC	4 cut(s)	202, 335, 522, 718
BspACI	CCGC	3 cut(s)	177, 179, 631
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	3 cut(s)	175, 241, 424
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	6, 806
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	805
BspPI	GGATC	1 cut(s)	343
BspQI	GCTCTTC	1 cut(s)	549
BspTNI	GGTCTC	2 cut(s)	113, 361
BsrDI	GCAATG	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	691
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	4 cut(s)	202, 335, 522, 718
BssNI	GRCGYC	2 cut(s)	93, 171
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	196, 330
Bst6I	CTCTTC	3 cut(s)	463, 508, 549
BstACI	GRCGYC	2 cut(s)	93, 171
BstC8I	GCNNGC	2 cut(s)	214, 507
BstDEI	CTNAG	3 cut(s)	183, 249, 432
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	259, 569
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	205, 338, 525, 721
BstMAI	GTCTC	3 cut(s)	113, 178, 361
BstMBI	GATC	4 cut(s)	202, 335, 522, 718
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 811
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	36, 192
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	50, 294, 640
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	259, 569
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 532
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	2 cut(s)	214, 507
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	4, 689
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	684
CspCI	CAANNNNNGTGG	2 cut(s)	782, 817
CviAII	CATG	1 cut(s)	455
CviQI	GTAC	1 cut(s)	684
DdeI	CTNAG	3 cut(s)	183, 249, 432
DpnI	GATC	4 cut(s)	204, 337, 524, 720
DpnII	GATC	4 cut(s)	202, 335, 522, 718
Eam1104I	CTCTTC	3 cut(s)	463, 508, 549
EarI	CTCTTC	3 cut(s)	463, 508, 549
Eco31I	GGTCTC	2 cut(s)	113, 361
Eco47I	GGWCC	2 cut(s)	4, 689
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	3 cut(s)	673, 722, 783
EcoRII	CCWGG	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	458
FaiI	YATR	9 cut(s)	450, 456, 492, 554, 615, 757, 810, 812, 844
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	1 cut(s)	454
FauNDI	CATATG	1 cut(s)	810
Fnu4HI	GCNGC	5 cut(s)	39, 180, 283, 629, 632
FokI	GGATG	2 cut(s)	266, 576
Fsp4HI	GCNGC	5 cut(s)	39, 180, 283, 629, 632
FspBI	CTAG	4 cut(s)	14, 234, 510, 659
GluI	GCNGC	5 cut(s)	39, 180, 283, 629, 632
GsaI	CCCAGC	1 cut(s)	220
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	5 cut(s)	129, 159, 487, 714, 797
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	2 cut(s)	93, 171
Hin1II	CATG	1 cut(s)	458
HincII	GTYRAC	2 cut(s)	124, 670
HindII	GTYRAC	2 cut(s)	124, 670
HinfI	GANTC	5 cut(s)	23, 135, 188, 257, 305
HpaI	GTTAAC	2 cut(s)	124, 670
HpaII	CCGG	5 cut(s)	129, 159, 487, 714, 797
HphI	GGTGA	2 cut(s)	190, 728
Hpy166II	GTNNAC	4 cut(s)	19, 88, 124, 670
Hpy188I	TCNGA	6 cut(s)	67, 151, 250, 340, 581, 693
Hpy188III	TCNNGA	2 cut(s)	548, 724
Hpy8I	GTNNAC	4 cut(s)	19, 88, 124, 670
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	40, 57, 368, 720
HpyCH4III	ACNGT	2 cut(s)	196, 330
HpyCH4IV	ACGT	2 cut(s)	171, 741
HpyCH4V	TGCA	4 cut(s)	38, 628, 680, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 811
HpyF3I	CTNAG	3 cut(s)	183, 249, 432
HpySE526I	ACGT	2 cut(s)	171, 741
Hsp92I	GRCGYC	2 cut(s)	93, 171
Hsp92II	CATG	1 cut(s)	458
KspAI	GTTAAC	2 cut(s)	124, 670
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	202, 335, 522, 718
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	1 cut(s)	810
Lsp1109I	GCAGC	3 cut(s)	50, 294, 640
MaeI	CTAG	4 cut(s)	14, 234, 510, 659
MaeII	ACGT	2 cut(s)	171, 741
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	4 cut(s)	204, 337, 524, 720
MboI	GATC	4 cut(s)	202, 335, 522, 718
MboII	GAAGA	8 cut(s)	42, 252, 267, 433, 480, 525, 536, 544
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	597
MluCI	AATT	3 cut(s)	296, 555, 610
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	5 cut(s)	18, 37, 178, 244, 464
MseI	TTAA	3 cut(s)	123, 669, 831
MspA1I	CMGCKG	2 cut(s)	179, 631
MspI	CCGG	5 cut(s)	129, 159, 487, 714, 797
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	506, 811
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	4 cut(s)	202, 335, 522, 718
NlaIII	CATG	1 cut(s)	458
NlaIV	GGNNCC	2 cut(s)	6, 806
NmuCI	GTSAC	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	549
PfeI	GAWTC	4 cut(s)	23, 188, 257, 305
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	5 cut(s)	40, 181, 284, 630, 633
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	6, 806
PspPI	GGNCC	2 cut(s)	4, 689
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	685
RsaNI	GTAC	1 cut(s)	684
SacII	CCGCGG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	123, 669, 831
SatI	GCNGC	5 cut(s)	39, 180, 283, 629, 632
Sau3AI	GATC	4 cut(s)	202, 335, 522, 718
Sau96I	GGNCC	2 cut(s)	4, 689
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	597
SfcI	CTRYAG	2 cut(s)	36, 192
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	4, 689
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	3 cut(s)	296, 555, 610
SsiI	CCGC	3 cut(s)	177, 179, 631
SspMI	CTAG	4 cut(s)	14, 234, 510, 659
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	2 cut(s)	196, 330
TaiI	ACGT	2 cut(s)	174, 744
TaqI	TCGA	4 cut(s)	133, 362, 597, 748
TasI	AATT	3 cut(s)	296, 555, 610
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	2 cut(s)	182, 634
TfiI	GAWTC	4 cut(s)	23, 188, 257, 305
Tru1I	TTAA	3 cut(s)	123, 669, 831
Tru9I	TTAA	3 cut(s)	123, 669, 831
TscAI	CASTG	2 cut(s)	292, 532
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	38, 282, 628
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	5 cut(s)	309, 443, 668, 734, 792
TspGWI	ACGGA	2 cut(s)	101, 428
TspRI	CASTG	2 cut(s)	292, 532
VpaK11BI	GGWCC	2 cut(s)	4, 689
XspI	CTAG	4 cut(s)	14, 234, 510, 659
ZraI	GACGTC	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.