Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00541

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

14940 .. 16314

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTGGGTTGGAGTACTTGACTTATGGGTCTTTGTTATTCAGGGAAATGCTTCCTCTGGCATGGGTGTTGCTGAGGACTGCCGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGTTTGTTTCTTTTGATGATGGCATGCTTTGACTTTTTATTATCAGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTATATCCAGTCACTGCAGCGCCAAGTCAAGTTTCTTTTGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCTGCCATTGAAGTGTTTCCTTCAAAAGAAGTAAGTGTTTTTCCTGGTGCACAGCAATTTGATGCAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCACAAGCTGAATGGCTGCATATGCAGGTTGGTGGAAGCTTTGAAAGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

195

Amino Acids

22.14

Weight (kDa)

9.22

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	547
AciI	CCGC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	6 cut(s)	382, 389, 402, 428, 441, 575
AjnI	CCWGG	2 cut(s)	286, 460
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AluBI	AGCT	3 cut(s)	485, 539, 570
AluI	AGCT	3 cut(s)	485, 539, 570
Alw21I	GWGCWC	1 cut(s)	469
Alw44I	GTGCAC	1 cut(s)	465
AlwNI	CAGNNNCTG	1 cut(s)	352
AoxI	GGCC	1 cut(s)	114
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	4 cut(s)	355, 482, 485, 547
ApoI	RAATTY	1 cut(s)	267
AseI	ATTAAT	1 cut(s)	336
Asp700I	GAANNNNTTC	2 cut(s)	49, 432
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	469
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	4 cut(s)	367, 472, 494, 534
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	288, 462
BfmI	CTRYAG	2 cut(s)	101, 353
BfoI	RGCGCY	1 cut(s)	361
BfuAI	ACCTGC	1 cut(s)	547
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	5 cut(s)	82, 356, 483, 486, 548
BlsI	GCNGC	5 cut(s)	83, 357, 484, 487, 549
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	288, 462
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	288, 462
BmsI	GCATC	1 cut(s)	469
Bpu10I	CCTNAGC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	288, 462
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	2 cut(s)	267, 296
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	367, 472, 494, 534
BsgI	GTGCAG	1 cut(s)	545
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	469, 533
Bsp143I	GATC	2 cut(s)	182, 249
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	2 cut(s)	105, 357
BspMI	ACCTGC	1 cut(s)	547
BspQI	GCTCTTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	2 cut(s)	182, 249
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	288, 462
Bst6I	CTCTTC	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	267, 296
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	2 cut(s)	185, 252
BstMBI	GATC	2 cut(s)	182, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 553
BstNI	CCWGG	2 cut(s)	288, 462
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	286, 460
BstSFI	CTRYAG	2 cut(s)	101, 353
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	4 cut(s)	367, 472, 494, 534
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	116
BtsCI	GGATG	2 cut(s)	267, 296
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	4 cut(s)	61, 197, 222, 412
CviJI	RGCY	7 cut(s)	116, 255, 485, 531, 539, 547, 570
CviKI_1	RGCY	7 cut(s)	116, 255, 485, 531, 539, 547, 570
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	184, 251
DpnII	GATC	2 cut(s)	182, 249
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	512
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	286, 460
EcoT14I	CCWWGG	1 cut(s)	512
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	4 cut(s)	64, 200, 225, 415
FalI	AAGNNNNNCTT	4 cut(s)	101, 133, 172, 204
FatI	CATG	4 cut(s)	60, 196, 221, 411
FauNDI	CATATG	1 cut(s)	552
Fnu4HI	GCNGC	5 cut(s)	82, 356, 483, 486, 548
FokI	GGATG	2 cut(s)	274, 303
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	5 cut(s)	82, 356, 483, 486, 548
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	5 cut(s)	82, 356, 483, 486, 548
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	64, 200, 225, 415
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	568
HinfI	GANTC	1 cut(s)	415
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	2 cut(s)	409, 467
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	409, 467
HpyAV	CCTTC	2 cut(s)	106, 447
HpyCH4V	TGCA	8 cut(s)	103, 196, 355, 467, 482, 526, 550, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 553
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	64, 200, 225, 415
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	182, 249
LguI	GCTCTTC	1 cut(s)	169
Lsp1109I	GCAGC	4 cut(s)	367, 472, 494, 534
LweI	GCATC	1 cut(s)	469
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	2 cut(s)	184, 251
MboI	GATC	2 cut(s)	182, 249
MboII	GAAGA	6 cut(s)	160, 163, 177, 180, 186, 263
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	469, 533
MluCI	AATT	5 cut(s)	165, 267, 337, 397, 473
MnlI	CCTC	4 cut(s)	64, 67, 151, 252
MroXI	GAANNNNTTC	2 cut(s)	49, 432
MseI	TTAA	2 cut(s)	135, 336
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	288, 462
MvaI	CCWGG	2 cut(s)	288, 462
MwoI	GCNNNNNNNGC	2 cut(s)	176, 553
NdeI	CATATG	1 cut(s)	552
NdeII	GATC	2 cut(s)	182, 249
NlaIII	CATG	4 cut(s)	64, 200, 225, 415
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	348
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	49, 432
PfeI	GAWTC	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	286
PkrI	GCNGC	5 cut(s)	83, 357, 484, 487, 549
PshBI	ATTAAT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	286, 460
PspGI	CCWGG	2 cut(s)	286, 460
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	500
PstI	CTGCAG	2 cut(s)	105, 357
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	135, 336
SatI	GCNGC	5 cut(s)	82, 356, 483, 486, 548
Sau3AI	GATC	2 cut(s)	182, 249
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	288, 462
SduI	GDGCHC	2 cut(s)	469, 533
SetI	ASST	7 cut(s)	162, 303, 387, 487, 541, 561, 572
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	101, 353
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	5 cut(s)	165, 267, 337, 397, 473
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	286, 460
StyI	CCWWGG	1 cut(s)	512
TasI	AATT	5 cut(s)	165, 267, 337, 397, 473
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	135, 336
Tru9I	TTAA	2 cut(s)	135, 336
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	4 cut(s)	355, 482, 485, 547
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	3 cut(s)	180, 278, 428
TspRI	CASTG	1 cut(s)	357
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	1 cut(s)	267
XceI	RCATGY	1 cut(s)	225
XmnI	GAANNNNTTC	2 cut(s)	49, 432
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.