Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

22340653 .. 22342021

Gene Structure 1369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGATATAAGAGTAGTGGTGAATTGGTTTCAGCTAATGGCTGTAAAGATTCAAGTGGGAAACGGATGGAGTTAGAGGGATCTAGAAACGAAAACGGCAATTCTAAAGCAGAAGCAAGGAGAGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTCTTGATGAGATTATTAATTACATCCAGTCACTACAGCACCAAGTCGAGTTCCTTTCATTGAACATTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGCGTTTCCTTCAAAAGATGTGTTTTTTCCTGGTGCACAACAATTTGATGCAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCAAATGGCTGCATATGCAGGTTGGTGGTTGTCTTGATTTTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

7.72

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	32 - 81	5.1e-09	Transcription factor SAC51 bHLH domain
HLH	PF00010	39 - 79	8e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	137
AgsI	TTSAA	6 cut(s)	54, 262, 269, 282, 308, 321
AjnI	CCWGG	2 cut(s)	166, 337
AluBI	AGCT	2 cut(s)	35, 362
AluI	AGCT	2 cut(s)	35, 362
Alw21I	GWGCWC	1 cut(s)	346
Alw44I	GTGCAC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	342
ApeKI	GCWGC	3 cut(s)	359, 362, 424
ApoI	RAATTY	1 cut(s)	147
AseI	ATTAAT	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	32, 298
AvaII	GGWCC	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	349, 371, 411
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	168, 339
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	3 cut(s)	360, 363, 425
BlsI	GCNGC	3 cut(s)	361, 364, 426
Bme1390I	CCNGG	2 cut(s)	168, 339
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	168, 339
BmsI	GCATC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	2 cut(s)	168, 339
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	4 cut(s)	72, 147, 176, 222
BseNI	ACTGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	349, 371, 411
BsgI	GTGCAG	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	346, 410
Bsp143I	GATC	2 cut(s)	80, 129
BspACI	CCGC	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	2 cut(s)	80, 129
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	2 cut(s)	168, 339
BstC8I	GCNNGC	2 cut(s)	410, 414
BstF5I	GGATG	4 cut(s)	72, 147, 176, 222
BstKTI	GATC	2 cut(s)	83, 132
BstMBI	GATC	2 cut(s)	80, 129
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 409, 430
BstNI	CCWGG	2 cut(s)	168, 339
BstSCI	CCNGG	2 cut(s)	166, 337
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	3 cut(s)	349, 371, 411
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BtsCI	GGATG	4 cut(s)	72, 147, 176, 222
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	410, 414
Cfr13I	GGNCC	1 cut(s)	377
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	7 cut(s)	35, 42, 135, 362, 408, 416, 424
CviKI_1	RGCY	7 cut(s)	35, 42, 135, 362, 408, 416, 424
DpnI	GATC	2 cut(s)	82, 131
DpnII	GATC	2 cut(s)	80, 129
Eco130I	CCWWGG	1 cut(s)	389
Eco24I	GRGCYC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	166, 337
EcoT14I	CCWWGG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	1 cut(s)	295
FaiI	YATR	6 cut(s)	9, 293, 399, 429, 431, 463
FatI	CATG	1 cut(s)	291
FauI	CCCGC	1 cut(s)	307
FauNDI	CATATG	1 cut(s)	429
Fnu4HI	GCNGC	3 cut(s)	360, 363, 425
FokI	GGATG	4 cut(s)	79, 154, 183, 209
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	3 cut(s)	360, 363, 425
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	360, 363, 425
Hin1II	CATG	1 cut(s)	295
HinfI	GANTC	2 cut(s)	50, 295
HphI	GGTGA	2 cut(s)	32, 298
Hpy166II	GTNNAC	2 cut(s)	289, 344
Hpy188III	TCNNGA	4 cut(s)	84, 155, 203, 449
Hpy8I	GTNNAC	2 cut(s)	289, 344
HpyAV	CCTTC	1 cut(s)	327
HpyCH4V	TGCA	5 cut(s)	344, 359, 403, 427, 433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 409, 430
Hsp92II	CATG	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	80, 129
LpnPI	CCDG	9 cut(s)	140, 149, 153, 180, 239, 324, 351, 389, 419
Lsp1109I	GCAGC	3 cut(s)	349, 371, 411
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	2 cut(s)	82, 131
MboI	GATC	2 cut(s)	80, 129
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	346, 410
MluCI	AATT	6 cut(s)	23, 100, 147, 217, 277, 350
MnlI	CCTC	2 cut(s)	70, 132
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	168, 339
MvaI	CCWGG	2 cut(s)	168, 339
MwoI	GCNNNNNNNGC	3 cut(s)	308, 409, 430
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	2 cut(s)	80, 129
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	50, 295
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	361, 364, 426
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	166, 337
PspGI	CCWGG	2 cut(s)	166, 337
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	3 cut(s)	360, 363, 425
Sau3AI	GATC	2 cut(s)	80, 129
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	168, 339
SduI	GDGCHC	2 cut(s)	346, 410
SetI	ASST	4 cut(s)	37, 183, 364, 438
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	377
Sse9I	AATT	6 cut(s)	23, 100, 147, 217, 277, 350
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	166, 337
StyI	CCWWGG	1 cut(s)	389
TaqI	TCGA	1 cut(s)	246
TasI	AATT	6 cut(s)	23, 100, 147, 217, 277, 350
TfiI	GAWTC	2 cut(s)	50, 295
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	3 cut(s)	359, 362, 424
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	4 cut(s)	158, 246, 308, 450
TspGWI	ACGGA	1 cut(s)	79
VneI	GTGCAC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	377
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	1 cut(s)	147
XbaI	TCTAGA	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.