Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

18986309 .. 18988721

Gene Structure 2413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG200500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTTCAAGAAGATTAAGGCCCTCATGATGGCATGCTTTGACTTTTTATTATCAGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGTGTTTCCTTCAGAAGATCAATTTGATGTAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGGTTGGTGGTAGCTTTGAAAGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

142

Amino Acids

16.05

Weight (kDa)

5.67

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	2 - 27	2.5e-06	La domain
bHLH_SAC51	PF23173	37 - 77	5.6e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	3 cut(s)	45, 122, 288
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	6 cut(s)	61, 247, 254, 267, 293, 416
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	2 cut(s)	326, 411
AluI	AGCT	2 cut(s)	326, 411
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	3 cut(s)	220, 326, 388
ApoI	RAATTY	1 cut(s)	132
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	73, 341
AsuHPI	GGTGA	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	232, 313, 375
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	218
BfoI	RGCGCY	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	3 cut(s)	221, 327, 389
BlsI	GCNGC	3 cut(s)	222, 328, 390
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	73, 341
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	3 cut(s)	132, 161, 207
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	232, 313, 375
BsgI	GTGCAG	1 cut(s)	386
BshFI	GGCC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	114, 310
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	114, 310
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	88, 374, 378
BstF5I	GGATG	3 cut(s)	132, 161, 207
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	2 cut(s)	117, 313
BstMBI	GATC	2 cut(s)	114, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 394
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	151
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	3 cut(s)	232, 313, 375
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	132, 161, 207
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	3 cut(s)	88, 374, 378
CaiI	CAGNNNCTG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	73, 341
CviAII	CATG	3 cut(s)	79, 87, 277
CviJI	RGCY	7 cut(s)	74, 120, 326, 372, 380, 388, 411
CviKI_1	RGCY	7 cut(s)	74, 120, 326, 372, 380, 388, 411
DpnI	GATC	2 cut(s)	116, 312
DpnII	GATC	2 cut(s)	114, 310
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	3 cut(s)	45, 122, 288
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	3 cut(s)	82, 90, 280
FaiI	YATR	8 cut(s)	11, 80, 88, 278, 363, 393, 395, 427
FatI	CATG	3 cut(s)	78, 86, 276
FauI	CCCGC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	3 cut(s)	221, 327, 389
FokI	GGATG	3 cut(s)	139, 168, 194
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	3 cut(s)	221, 327, 389
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	3 cut(s)	221, 327, 389
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	82, 90, 280
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	109, 307
Hpy188III	TCNNGA	3 cut(s)	61, 79, 140
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	2 cut(s)	20, 312
HpyCH4V	TGCA	5 cut(s)	53, 220, 367, 391, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 394
Hsp92II	CATG	3 cut(s)	82, 90, 280
HspAI	GCGC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	114, 310
LpnPI	CCDG	8 cut(s)	36, 125, 134, 138, 165, 224, 353, 383
Lsp1109I	GCAGC	3 cut(s)	232, 313, 375
LweI	GCATC	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	2 cut(s)	116, 312
MboI	GATC	2 cut(s)	114, 310
MboII	GAAGA	3 cut(s)	76, 128, 320
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	4 cut(s)	132, 202, 262, 314
MnlI	CCTC	2 cut(s)	86, 117
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	69, 201
MslI	CAYNNNNRTG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	373, 394
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	2 cut(s)	114, 310
NlaIII	CATG	3 cut(s)	82, 90, 280
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	90
PaeI	GCATGC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	222, 328, 390
PshBI	ATTAAT	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	73, 341
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	69, 201
SatI	GCNGC	3 cut(s)	221, 327, 389
Sau3AI	GATC	2 cut(s)	114, 310
Sau96I	GGNCC	2 cut(s)	73, 341
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	6 cut(s)	8, 168, 252, 328, 402, 413
SfaNI	GCATC	1 cut(s)	62
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	4 cut(s)	132, 202, 262, 314
SsiI	CCGC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	1 cut(s)	353
TaqI	TCGA	1 cut(s)	231
TasI	AATT	4 cut(s)	132, 202, 262, 314
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	69, 201
Tru9I	TTAA	2 cut(s)	69, 201
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	3 cut(s)	220, 326, 388
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	143, 293
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	132
XceI	RCATGY	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.