Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8134850.1

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

325 .. 634

Gene Structure 310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8134850.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggatcctccgctgatcaacgaggcgtctttctcggcggcgaacccggcggcgtacagcctggcggagatttggccgttcggcggcgagccgggtcgtttggggctccgaatggggagtttgggtggtgggttgggagagagctccgggaatagagatgggtcgttggaggaatcgacggtgacggagcagagtggcggcggcggcggaaggaagaggaaggatgtgagctccgaggatgagtcttctaagatggtttctactagtagtgctaatggcttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

94

Amino Acids

9.51

Weight (kDa)

4.55

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	83
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	144, 231
AluI	AGCT	2 cut(s)	144, 231
Alw21I	GWGCWC	2 cut(s)	146, 233
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	74
AsuC2I	CCSGG	3 cut(s)	47, 93, 148
AsuHPI	GGTGA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	3 cut(s)	108, 146, 233
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	146, 233
BccI	CCATC	2 cut(s)	152, 247
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	3 cut(s)	47, 93, 148
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
BlsI	GCNGC	6 cut(s)	40, 52, 86, 200, 203, 206
Bme1390I	CCNGG	4 cut(s)	47, 62, 93, 148
BmiI	GGNNCC	2 cut(s)	6, 107
BmrFI	CCNGG	4 cut(s)	47, 62, 93, 148
BpiI	GAAGAC	1 cut(s)	237
BpuMI	CCSGG	3 cut(s)	47, 93, 148
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	229, 244
BseLI	CCNNNNNNNGG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	146, 233
BsiSI	CCGG	3 cut(s)	47, 92, 147
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	3 cut(s)	108, 146, 233
Bsp143I	GATC	2 cut(s)	4, 15
BspACI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
BspANI	GGCC	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	6, 107
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	4, 15
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	229, 244
BstKTI	GATC	2 cut(s)	7, 18
BstMBI	GATC	2 cut(s)	4, 15
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 204
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	4 cut(s)	45, 60, 91, 146
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	229, 244
Cac8I	GCNNGC	1 cut(s)	89
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	55
CviJI	RGCY	7 cut(s)	60, 76, 91, 106, 144, 231, 279
CviKI_1	RGCY	7 cut(s)	60, 76, 91, 106, 144, 231, 279
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	6, 17
DpnII	GATC	2 cut(s)	4, 15
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	80, 222
Ecl136II	GAGCTC	2 cut(s)	144, 231
Eco24I	GRGCYC	3 cut(s)	108, 146, 233
Eco53kI	GAGCTC	2 cut(s)	144, 231
EcoICRI	GAGCTC	2 cut(s)	144, 231
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	3 cut(s)	108, 146, 233
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
FokI	GGATG	2 cut(s)	236, 251
FriOI	GRGCYC	3 cut(s)	108, 146, 233
Fsp4HI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	3 cut(s)	47, 92, 147
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	173, 242
HpaII	CCGG	3 cut(s)	47, 92, 147
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	110, 235
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	204, 214
HpyCH4III	ACNGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 204
HpyF3I	CTNAG	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	4, 15
LmnI	GCTCC	4 cut(s)	111, 149, 187, 236
LpnPI	CCDG	5 cut(s)	47, 60, 74, 105, 160
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	6, 17
MboI	GATC	2 cut(s)	4, 15
MboII	GAAGA	2 cut(s)	226, 237
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	108, 146, 233
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	16, 18, 163, 210, 229
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	3 cut(s)	47, 92, 147
MspR9I	CCNGG	4 cut(s)	47, 62, 93, 148
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	47, 204
NciI	CCSGG	3 cut(s)	47, 93, 148
NdeII	GATC	2 cut(s)	4, 15
NlaIV	GGNNCC	2 cut(s)	6, 107
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	40, 52, 86, 200, 203, 206
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	2 cut(s)	146, 233
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	6, 107
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	2 cut(s)	146, 233
SatI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
Sau3AI	GATC	2 cut(s)	4, 15
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	4 cut(s)	47, 62, 93, 148
SduI	GDGCHC	3 cut(s)	108, 146, 233
SetI	ASST	2 cut(s)	146, 233
SpeI	ACTAGT	1 cut(s)	263
SsiI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	2 cut(s)	146, 233
StyD4I	CCNGG	4 cut(s)	45, 60, 91, 146
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	176
TauI	GCSGC	6 cut(s)	41, 53, 87, 201, 204, 207
TfiI	GAWTC	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	200
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.