Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

2360965 .. 2366131

Gene Structure 5167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03530.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGCAAGTTAATTACTTTAGTCTAAAGAAGCTGGCAAAATTGCACTGTAGAAATGAACAGTGTTTTGTAAGACATTTCAGTTTATTTACAAGACTACCACTGGCCCTCTTTGCCGTTAATCTTGATGCATACGTGTTGATGATCGTGGGAAGGAAGAACGATGGTAAAGGCGGTCTTTTTCGTTTCCTTCTCAAACCCTTCTTGCCTCTTCCGTCTCACAGACCCGACGAGAACGACACAGACGGTCTCGCGTCCATCCTATCCTCCTCTCACCGCCGTCTGCCTTCCCTCGCCTATGTCGTCTTACTCCATCGTTTGCGTCATGGAGGCCCATGCGTGGTTTTTTGGGTGGGGATTTCAGATTTCAAGGGGGAGAGAGGCTGTGCTTCGTTTTGTGCAGGTGGAAAACGGGTGAAATTAGCAGGATCCAGTAATGAAAATGGCAGTTTGAAGGCTGAAGTTGAAGAAAGTTCAGCTGCTGGTGACAACAAGCCAGCTGAAGAAAGCTCTAAACCTTCCGAGCCACCCAAGCAAGACTATATCCATGTCAGGGCAAGAAGGGTACAAGCTACATATAGACTTGAAGAAGTAGCTGACGCTGATCTATCCCAGAGACGAAGGCAAATCTCTACTAAACAGCCCATATTGGCCGACGACAGAGATTTAGTATGCAAAGTCAGCGAAGCTGGTGAGGTTTCCAAGGACGTCACCAATTTCGTGAAGTTGCTGGAGAACAAATTGGAAAAGTTCAATGCTTTCTTTGTGGAGAAGGAGGAGTGGTACGTTAGTCGATGGAAGGACTTCGTTAACCTAGAAGTCAACCTGCTGATGCCAAAGCAGAACAGAAGTGAAGATGTGAGAGATGGGTGCTCTTTGCTGCTGTCCTTGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

298

Amino Acids

33.61

Weight (kDa)

9.1

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
AatII	GACGTC	1 cut(s)	708
Acc36I	ACCTGC	2 cut(s)	389, 831
AccII	CGCG	1 cut(s)	251
AciI	CCGC	2 cut(s)	171, 274
AclWI	GGATC	2 cut(s)	420, 433
AcoI	YGGCCR	1 cut(s)	648
AcuI	CTGAAG	2 cut(s)	477, 519
AcyI	GRCGYC	1 cut(s)	705
AfaI	GTAC	2 cut(s)	564, 782
AfiI	CCNNNNNNNGG	2 cut(s)	337, 550
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	367, 451, 464, 584, 751
AluBI	AGCT	7 cut(s)	31, 476, 497, 507, 569, 593, 686
AluI	AGCT	7 cut(s)	31, 476, 497, 507, 569, 593, 686
Alw21I	GWGCWC	1 cut(s)	872
Alw26I	GTCTC	3 cut(s)	219, 251, 607
AlwI	GGATC	2 cut(s)	420, 433
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	3 cut(s)	102, 328, 648
ApeKI	GCWGC	2 cut(s)	476, 877
Asp700I	GAANNNNTTC	1 cut(s)	800
AspS9I	GGNCC	2 cut(s)	103, 329
AsuHPI	GGTGA	5 cut(s)	263, 424, 494, 700, 701
BaeI	ACNNNNGTAYC	2 cut(s)	772, 805
BamHI	GGATCC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	872
BbvI	GCAGC	2 cut(s)	463, 864
BccI	CCATC	5 cut(s)	155, 263, 318, 786, 857
BceAI	ACGGC	2 cut(s)	98, 261
BcoDI	GTCTC	3 cut(s)	219, 251, 607
BfaI	CTAG	1 cut(s)	812
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	2 cut(s)	389, 831
BisI	GCNGC	2 cut(s)	477, 878
BlsI	GCNGC	2 cut(s)	478, 879
BmgT120I	GGNCC	2 cut(s)	103, 329
BmiI	GGNNCC	1 cut(s)	427
BmsI	GCATC	2 cut(s)	115, 819
BpmI	CTGGAG	1 cut(s)	749
BsaAI	YACGTR	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	705
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	764, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 550
Bse1I	ACTGG	2 cut(s)	105, 429
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	337, 550
BseNI	ACTGG	2 cut(s)	105, 429
BseRI	GAGGAG	2 cut(s)	256, 788
BseXI	GCAGC	2 cut(s)	463, 864
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	104, 330, 650
BsiHKAI	GWGCWC	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	337, 550
BsmAI	GTCTC	3 cut(s)	219, 251, 607
BsmBI	CGTCTC	2 cut(s)	219, 607
BsnI	GGCC	3 cut(s)	104, 330, 650
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp143I	GATC	3 cut(s)	141, 425, 601
BspACI	CCGC	2 cut(s)	171, 274
BspANI	GGCC	3 cut(s)	104, 330, 650
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	427
BspMI	ACCTGC	2 cut(s)	389, 831
BspPI	GGATC	2 cut(s)	420, 433
BspTNI	GGTCTC	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	105, 429
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	3 cut(s)	141, 425, 601
BssNI	GRCGYC	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	699
Bst4CI	ACNGT	3 cut(s)	47, 60, 245
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	33, 495
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	251
BstKTI	GATC	3 cut(s)	144, 428, 604
BstMAI	GTCTC	3 cut(s)	219, 251, 607
BstMBI	GATC	3 cut(s)	141, 425, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 529, 678, 886
BstSFI	CTRYAG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	463, 864
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	3 cut(s)	104, 330, 650
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	3 cut(s)	43, 65, 98
BveI	ACCTGC	2 cut(s)	389, 831
Cac8I	GCNNGC	2 cut(s)	33, 495
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	103, 329
CseI	GACGC	3 cut(s)	240, 308, 605
Csp6I	GTAC	2 cut(s)	563, 781
CviAII	CATG	3 cut(s)	323, 333, 545
CviQI	GTAC	2 cut(s)	563, 781
DpnI	GATC	3 cut(s)	143, 427, 603
DpnII	GATC	3 cut(s)	141, 425, 601
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	251
Eco57I	CTGAAG	2 cut(s)	477, 519
EcoT14I	CCWWGG	1 cut(s)	699
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	699
Esp3I	CGTCTC	2 cut(s)	219, 607
FaeI	CATG	3 cut(s)	326, 336, 548
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	3 cut(s)	322, 332, 544
Fnu4HI	GCNGC	2 cut(s)	477, 878
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	477, 878
FspBI	CTAG	1 cut(s)	812
GluI	GCNGC	2 cut(s)	477, 878
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	3 cut(s)	104, 330, 650
HgaI	GACGC	3 cut(s)	240, 308, 605
Hin1I	GRCGYC	1 cut(s)	705
Hin1II	CATG	3 cut(s)	326, 336, 548
HincII	GTYRAC	2 cut(s)	808, 820
HindII	GTYRAC	2 cut(s)	808, 820
HpaI	GTTAAC	1 cut(s)	808
HphI	GGTGA	5 cut(s)	263, 424, 494, 700, 701
Hpy166II	GTNNAC	2 cut(s)	808, 820
Hpy188I	TCNGA	2 cut(s)	361, 520
Hpy188III	TCNNGA	2 cut(s)	122, 718
Hpy8I	GTNNAC	2 cut(s)	808, 820
Hpy99I	CGWCG	2 cut(s)	230, 656
HpyCH4III	ACNGT	3 cut(s)	47, 60, 245
HpyCH4IV	ACGT	3 cut(s)	132, 705, 783
HpyCH4V	TGCA	5 cut(s)	4, 43, 128, 398, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 529, 678, 886
HpySE526I	ACGT	3 cut(s)	132, 705, 783
Hsp92I	GRCGYC	1 cut(s)	705
Hsp92II	CATG	3 cut(s)	326, 336, 548
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	141, 425, 601
Lsp1109I	GCAGC	2 cut(s)	463, 864
LweI	GCATC	2 cut(s)	115, 819
MaeI	CTAG	1 cut(s)	812
MaeII	ACGT	3 cut(s)	132, 705, 783
MaeIII	GTNAC	2 cut(s)	482, 706
MalI	GATC	3 cut(s)	143, 427, 603
MboI	GATC	3 cut(s)	141, 425, 601
MboII	GAAGA	6 cut(s)	166, 200, 476, 512, 596, 863
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	5 cut(s)	10, 38, 416, 712, 737
MnlI	CCTC	9 cut(s)	116, 216, 274, 277, 299, 320, 371, 685, 766
Mph1103I	ATGCAT	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	3 cut(s)	9, 117, 807
MspA1I	CMGCKG	2 cut(s)	476, 497
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	4 cut(s)	110, 529, 678, 886
NdeII	GATC	3 cut(s)	141, 425, 601
NlaIII	CATG	3 cut(s)	326, 336, 548
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	482, 706
NsiI	ATGCAT	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	800
PkrI	GCNGC	2 cut(s)	478, 879
Ppu21I	YACGTR	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	103, 329
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	2 cut(s)	476, 497
RsaI	GTAC	2 cut(s)	564, 782
RsaNI	GTAC	2 cut(s)	563, 781
SaqAI	TTAA	3 cut(s)	9, 117, 807
SatI	GCNGC	2 cut(s)	477, 878
Sau3AI	GATC	3 cut(s)	141, 425, 601
Sau96I	GGNCC	2 cut(s)	103, 329
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	2 cut(s)	115, 819
SfcI	CTRYAG	1 cut(s)	46
Sse9I	AATT	5 cut(s)	10, 38, 416, 712, 737
SsiI	CCGC	2 cut(s)	171, 274
SspMI	CTAG	1 cut(s)	812
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	3 cut(s)	47, 60, 245
TaiI	ACGT	3 cut(s)	135, 708, 786
TaqI	TCGA	1 cut(s)	790
TasI	AATT	5 cut(s)	10, 38, 416, 712, 737
Tru1I	TTAA	3 cut(s)	9, 117, 807
Tru9I	TTAA	3 cut(s)	9, 117, 807
TscAI	CASTG	3 cut(s)	50, 65, 105
TseFI	GTSAC	2 cut(s)	482, 706
TseI	GCWGC	2 cut(s)	476, 877
Tsp45I	GTSAC	2 cut(s)	482, 706
TspDTI	ATGAA	2 cut(s)	69, 450
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	3 cut(s)	50, 65, 105
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	1 cut(s)	812
ZraI	GACGTC	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.