Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

55468014 .. 55469847

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATGATTTCACTGATGATGGCATGCTTTGACTTTTTATTATCAGAATTGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGTGTTTCCTTCAAAAGATCAATTTGATGCAGCTGCATTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCACAAGCCGAATGGCTGCATATGCAAGTTGGTGGTAGCTTTGAAAGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

121

Amino Acids

13.66

Weight (kDa)

5.02

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	59
AgsI	TTSAA	6 cut(s)	184, 191, 204, 230, 243, 353
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	263, 348
AluI	AGCT	2 cut(s)	263, 348
AlwNI	CAGNNNCTG	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	157, 260, 263, 325
ApoI	RAATTY	1 cut(s)	69
AseI	ATTAAT	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	311
BbvI	GCAGC	4 cut(s)	169, 250, 272, 312
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	90
BclI	TGATCA	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	163
BisI	GCNGC	4 cut(s)	158, 261, 264, 326
BlsI	GCNGC	4 cut(s)	159, 262, 265, 327
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	3 cut(s)	69, 98, 144
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	4 cut(s)	169, 250, 272, 312
BsgI	GTGCAG	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	51, 247
BspACI	CCGC	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	2 cut(s)	51, 247
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	25
BstF5I	GGATG	3 cut(s)	69, 98, 144
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	2 cut(s)	54, 250
BstMBI	GATC	2 cut(s)	51, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	155
BstV1I	GCAGC	4 cut(s)	169, 250, 272, 312
BtsCI	GGATG	3 cut(s)	69, 98, 144
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	11, 152
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	154
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	278
CviAII	CATG	2 cut(s)	24, 214
CviJI	RGCY	6 cut(s)	57, 263, 309, 317, 325, 348
CviKI_1	RGCY	6 cut(s)	57, 263, 309, 317, 325, 348
DpnI	GATC	2 cut(s)	53, 249
DpnII	GATC	2 cut(s)	51, 247
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	27, 217
FaiI	YATR	6 cut(s)	25, 215, 300, 330, 332, 364
FatI	CATG	2 cut(s)	23, 213
FauI	CCCGC	1 cut(s)	229
FauNDI	CATATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	158, 261, 264, 326
FokI	GGATG	3 cut(s)	76, 105, 131
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	158, 261, 264, 326
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	4 cut(s)	158, 261, 264, 326
HaeII	RGCGCY	1 cut(s)	163
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	27, 217
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	249
HpyCH4V	TGCA	6 cut(s)	157, 260, 266, 304, 328, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	27, 217
HspAI	GCGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	51, 247
LpnPI	CCDG	6 cut(s)	62, 71, 75, 102, 161, 290
Lsp1109I	GCAGC	4 cut(s)	169, 250, 272, 312
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	2 cut(s)	53, 249
MboI	GATC	2 cut(s)	51, 247
MboII	GAAGA	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	5 cut(s)	47, 69, 139, 199, 251
MnlI	CCTC	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	2 cut(s)	51, 247
NlaIII	CATG	2 cut(s)	27, 217
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	150
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	4 cut(s)	159, 262, 265, 327
PshBI	ATTAAT	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	263
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	4 cut(s)	158, 261, 264, 326
Sau3AI	GATC	2 cut(s)	51, 247
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	4 cut(s)	105, 189, 265, 350
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	155
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	230
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	5 cut(s)	47, 69, 139, 199, 251
SsiI	CCGC	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	290
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	47, 69, 139, 199, 251
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	18, 159
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	4 cut(s)	157, 260, 263, 325
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	80, 230
TspRI	CASTG	2 cut(s)	18, 159
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.