Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

28592044 .. 28593358

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG130200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTGTTGCTGAGGACTGCTGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTGTGGTAGAAAAGACTGGAGGCCCAGCTGAAAGTTATGATGATTTCACTGGTTCATTGCCTGAAAATGATTGCCGATATGCAATCTATGACTTTGATTTTGTCACTTCAGAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCATGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGTGTTTCCTTCAAAAGATCAATTTGATGCAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGGTTGGTGGTAGCTTTGAAAGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

185

Amino Acids

21.05

Weight (kDa)

5.16

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	2 - 82	2.3e-19	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	517
AciI	CCGC	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	2 cut(s)	192, 251
AgsI	TTSAA	6 cut(s)	376, 383, 396, 422, 435, 545
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	3 cut(s)	128, 455, 540
AluI	AGCT	3 cut(s)	128, 455, 540
AlwNI	CAGNNNCTG	1 cut(s)	346
AoxI	GGCC	2 cut(s)	54, 121
ApeKI	GCWGC	5 cut(s)	21, 349, 452, 455, 517
ApoI	RAATTY	1 cut(s)	261
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AseI	ATTAAT	1 cut(s)	330
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	122, 470
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	503
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	5 cut(s)	8, 361, 442, 464, 504
BciT130I	CCWGG	1 cut(s)	282
BfmI	CTRYAG	2 cut(s)	41, 347
BfoI	RGCGCY	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	517
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	5 cut(s)	22, 350, 453, 456, 518
BlsI	GCNGC	5 cut(s)	23, 351, 454, 457, 519
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	122, 470
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	482
Bse1I	ACTGG	3 cut(s)	121, 154, 340
Bse3DI	GCAATG	2 cut(s)	155, 240
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	3 cut(s)	261, 290, 336
BseMI	GCAATG	2 cut(s)	155, 240
BseNI	ACTGG	3 cut(s)	121, 154, 340
BseXI	GCAGC	5 cut(s)	8, 361, 442, 464, 504
BseYI	CCCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	515
BshFI	GGCC	2 cut(s)	56, 123
BsnI	GGCC	2 cut(s)	56, 123
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	231, 439
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	56, 123
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	2 cut(s)	45, 351
BspMI	ACCTGC	1 cut(s)	517
BspQI	GCTCTTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	155, 240
BsrI	ACTGG	3 cut(s)	121, 154, 340
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	2 cut(s)	231, 439
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	247, 503, 507
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	261, 290, 336
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	2 cut(s)	234, 442
BstMBI	GATC	2 cut(s)	231, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 502, 523
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	2 cut(s)	41, 347
BstV1I	GCAGC	5 cut(s)	8, 361, 442, 464, 504
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	56, 123
BtsCI	GGATG	3 cut(s)	261, 290, 336
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	147, 344
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	3 cut(s)	247, 503, 507
CaiI	CAGNNNCTG	1 cut(s)	346
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	122, 470
CviAII	CATG	2 cut(s)	246, 406
CviJI	RGCY	8 cut(s)	56, 123, 128, 455, 501, 509, 517, 540
CviKI_1	RGCY	8 cut(s)	56, 123, 128, 455, 501, 509, 517, 540
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	2 cut(s)	233, 441
DpnII	GATC	2 cut(s)	231, 439
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	482
Eco147I	AGGCCT	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	2 cut(s)	192, 251
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	2 cut(s)	249, 409
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 221, 253
FatI	CATG	2 cut(s)	245, 405
FauI	CCCGC	1 cut(s)	421
FauNDI	CATATG	1 cut(s)	522
Fnu4HI	GCNGC	5 cut(s)	22, 350, 453, 456, 518
FokI	GGATG	3 cut(s)	268, 297, 323
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	5 cut(s)	22, 350, 453, 456, 518
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	5 cut(s)	22, 350, 453, 456, 518
GsaI	CCCAGC	1 cut(s)	128
GsuI	CTGGAG	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	2 cut(s)	56, 123
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	249, 409
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	409
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	46, 441
HpyCH4V	TGCA	9 cut(s)	24, 43, 182, 245, 349, 452, 496, 520, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 502, 523
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	249, 409
HspAI	GCGC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	231, 439
LguI	GCTCTTC	1 cut(s)	218
Lsp1109I	GCAGC	5 cut(s)	8, 361, 442, 464, 504
LweI	GCATC	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	202, 342
MalI	GATC	2 cut(s)	233, 441
MboI	GATC	2 cut(s)	231, 439
MboII	GAAGA	6 cut(s)	100, 103, 226, 229, 235, 257
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	5 cut(s)	214, 261, 331, 391, 443
MnlI	CCTC	4 cut(s)	7, 91, 113, 246
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	75, 330
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	2 cut(s)	128, 455
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	225, 502, 523
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	2 cut(s)	231, 439
NlaIII	CATG	2 cut(s)	249, 409
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	2 cut(s)	202, 342
NspI	RCATGY	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	409
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	23, 351, 454, 457, 519
PshBI	ATTAAT	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	122, 470
PstI	CTGCAG	2 cut(s)	45, 351
PstNI	CAGNNNCTG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	231
PvuII	CAGCTG	2 cut(s)	128, 455
RseI	CAYNNNNRTG	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	75, 330
SatI	GCNGC	5 cut(s)	22, 350, 453, 456, 518
Sau3AI	GATC	2 cut(s)	231, 439
Sau96I	GGNCC	2 cut(s)	122, 470
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	7 cut(s)	102, 130, 297, 381, 457, 531, 542
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	2 cut(s)	41, 347
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	5 cut(s)	214, 261, 331, 391, 443
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	1 cut(s)	414
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	482
TaqI	TCGA	1 cut(s)	360
TasI	AATT	5 cut(s)	214, 261, 331, 391, 443
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	2 cut(s)	75, 330
Tru9I	TTAA	2 cut(s)	75, 330
TscAI	CASTG	2 cut(s)	154, 351
TseFI	GTSAC	2 cut(s)	202, 342
TseI	GCWGC	5 cut(s)	21, 349, 452, 455, 517
Tsp45I	GTSAC	2 cut(s)	202, 342
TspDTI	ATGAA	4 cut(s)	144, 229, 272, 422
TspRI	CASTG	2 cut(s)	154, 351
VpaK11BI	GGWCC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.