Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

26443789 .. 26445609

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGGAGTTTGGGTGGTGGGTTGGAAGAGAGCTCTGGGAATAGAGATGGGTCGTTGGAGGAATCGACGGTGAAGGAGCAGAGCGGCGGCAGCGGAAGGAAGAGGAAGGACGTGAGCTCTAAGGACGAGTCTTTGAAGATGGTTTCTATTAGTAGTGCTAATGGCTTGAAAGATTCAAGTGGGAAACGGATAAAGTTAGAGGGATCTAGAAACGAAAATGGCAATTCTAAAGCTGAAGTTGAAACAAGTTCAGGGGCTGCTGACAAGCCAGAGGAACAAAGCACTAAACCTTCTGAGCCACCTAAGCAAGATTATATCCATGTGAGGACGAGAAGGGGCCAAGCTACTGATAGCCACAGTCTTGTAGAGAGAGCAAGGAGAGAAAAGATCAGCGAGAGGATGAAAATTCCTCAAGATTTGGTTCCCGGATGTAATAAGGTTATTTGGAAAGCACTTGTTCTTGATGAGATTATTAATTACATCCAGTCCCTGCAGCACCAAGTCGAGGTATCTATCCCTATCAGGCCTATTGGTAAGTGGGTTTGGCAGGAAGTGCATGTGCTTGTCATTGTTAGCATGCTTGCCTACTTTTGCTTTCTTGAGCAGCTACTGGTTGAGAAAACGGGTACGGGAGCAATTGCCATCTCTCTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

219

Amino Acids

23.89

Weight (kDa)

7.76

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	118 - 165	5.3e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	123 - 170	1.5e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	84
AciI	CCGC	3 cut(s)	84, 87, 93
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	4 cut(s)	136, 169, 177, 242
AjiI	CACGTC	1 cut(s)	112
AluBI	AGCT	5 cut(s)	33, 117, 233, 344, 607
AluI	AGCT	5 cut(s)	33, 117, 233, 344, 607
Alw21I	GWGCWC	2 cut(s)	35, 119
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	3 cut(s)	257, 490, 610
AoxI	GGCC	2 cut(s)	337, 524
ApeKI	GCWGC	4 cut(s)	90, 257, 493, 604
ApoI	RAATTY	1 cut(s)	405
AseI	ATTAAT	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	82
BanII	GRGCYC	2 cut(s)	35, 119
Bbv12I	GWGCWC	2 cut(s)	35, 119
BbvI	GCAGC	4 cut(s)	102, 244, 505, 616
BccI	CCATC	3 cut(s)	41, 133, 650
BcnI	CCSGG	1 cut(s)	426
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	491
BisI	GCNGC	6 cut(s)	85, 88, 91, 258, 494, 605
BlsI	GCNGC	6 cut(s)	86, 89, 92, 259, 495, 606
Bme1390I	CCNGG	1 cut(s)	426
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	338, 423
BmrFI	CCNGG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	396, 620
BpuMI	CCSGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	2 cut(s)	484, 615
BseGI	GGATG	3 cut(s)	405, 434, 480
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	484, 615
BseXI	GCAGC	4 cut(s)	102, 244, 505, 616
BshFI	GGCC	2 cut(s)	339, 526
BsiHKAI	GWGCWC	2 cut(s)	35, 119
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	339, 526
Bsp1286I	GDGCHC	2 cut(s)	35, 119
Bsp143I	GATC	2 cut(s)	203, 387
BspACI	CCGC	3 cut(s)	84, 87, 93
BspANI	GGCC	2 cut(s)	339, 526
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	338, 423
BspMAI	CTGCAG	1 cut(s)	495
BspPI	GGATC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	484, 615
BssMI	GATC	2 cut(s)	203, 387
Bst4CI	ACNGT	2 cut(s)	70, 359
Bst6I	CTCTTC	2 cut(s)	21, 95
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	2 cut(s)	578, 582
BstDEI	CTNAG	3 cut(s)	120, 294, 303
BstF5I	GGATG	3 cut(s)	405, 434, 480
BstKTI	GATC	2 cut(s)	206, 390
BstMBI	GATC	2 cut(s)	203, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 304, 553
BstNSI	RCATGY	2 cut(s)	560, 580
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	491
BstV1I	GCAGC	4 cut(s)	102, 244, 505, 616
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	339, 526
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	405, 434, 480
Cac8I	GCNNGC	2 cut(s)	578, 582
CaiI	CAGNNNCTG	3 cut(s)	257, 490, 610
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	3 cut(s)	320, 557, 577
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	3 cut(s)	120, 294, 303
DpnI	GATC	2 cut(s)	205, 389
DpnII	GATC	2 cut(s)	203, 387
Eam1104I	CTCTTC	2 cut(s)	21, 95
EarI	CTCTTC	2 cut(s)	21, 95
Ecl136II	GAGCTC	2 cut(s)	33, 117
Eco147I	AGGCCT	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	35, 119
Eco53kI	GAGCTC	2 cut(s)	33, 117
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	2 cut(s)	33, 117
EcoT38I	GRGCYC	2 cut(s)	35, 119
FaeI	CATG	3 cut(s)	323, 560, 580
FaiI	YATR	4 cut(s)	315, 321, 558, 578
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	319, 556, 576
Fnu4HI	GCNGC	6 cut(s)	85, 88, 91, 258, 494, 605
FokI	GGATG	3 cut(s)	412, 441, 467
FriOI	GRGCYC	2 cut(s)	35, 119
Fsp4HI	GCNGC	6 cut(s)	85, 88, 91, 258, 494, 605
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	6 cut(s)	85, 88, 91, 258, 494, 605
HaeIII	GGCC	2 cut(s)	339, 526
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	3 cut(s)	323, 560, 580
HinfI	GANTC	3 cut(s)	62, 128, 173
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	4 cut(s)	207, 413, 461, 599
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	5 cut(s)	67, 90, 100, 300, 327
HpyCH4III	ACNGT	2 cut(s)	70, 359
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	493, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 304, 553
HpyF3I	CTNAG	3 cut(s)	120, 294, 303
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	323, 560, 580
Kzo9I	GATC	2 cut(s)	203, 387
LmnI	GCTCC	2 cut(s)	76, 632
LpnPI	CCDG	9 cut(s)	21, 237, 282, 439, 497, 503, 508, 533, 596
Lsp1109I	GCAGC	4 cut(s)	102, 244, 505, 616
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	111
MalI	GATC	2 cut(s)	205, 389
MbiI	CCGCTC	1 cut(s)	84
MboI	GATC	2 cut(s)	203, 387
MboII	GAAGA	3 cut(s)	38, 112, 148
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	2 cut(s)	35, 119
MluCI	AATT	4 cut(s)	223, 405, 475, 636
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	8 cut(s)	52, 96, 193, 265, 318, 390, 420, 499
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	636
MwoI	GCNNNNNNNGC	3 cut(s)	90, 304, 553
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	2 cut(s)	203, 387
NlaIII	CATG	3 cut(s)	323, 560, 580
NlaIV	GGNNCC	2 cut(s)	338, 423
NspI	RCATGY	2 cut(s)	560, 580
PaeI	GCATGC	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	62, 173
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	6 cut(s)	86, 89, 92, 259, 495, 606
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PshBI	ATTAAT	1 cut(s)	474
Psp124BI	GAGCTC	2 cut(s)	35, 119
PspN4I	GGNNCC	2 cut(s)	338, 423
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	495
PstNI	CAGNNNCTG	3 cut(s)	257, 490, 610
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SacI	GAGCTC	2 cut(s)	35, 119
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	6 cut(s)	85, 88, 91, 258, 494, 605
Sau3AI	GATC	2 cut(s)	203, 387
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	2 cut(s)	35, 119
SfcI	CTRYAG	1 cut(s)	491
SmlI	CTYRAG	2 cut(s)	411, 599
SmoI	CTYRAG	2 cut(s)	411, 599
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	4 cut(s)	223, 405, 475, 636
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	3 cut(s)	84, 87, 93
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	2 cut(s)	35, 119
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	70, 359
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	65, 504
TasI	AATT	4 cut(s)	223, 405, 475, 636
TauI	GCSGC	2 cut(s)	87, 90
TfiI	GAWTC	2 cut(s)	62, 173
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseI	GCWGC	4 cut(s)	90, 257, 493, 604
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	1 cut(s)	405
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	2 cut(s)	560, 580
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.