Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

2158018 .. 2162397

Gene Structure 4380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG031200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATCCTCCGCTGATCAACGAGGCGTCTTTCTCGGCGGCGAACCCGGCGGCGTACAGCCTGGCGGAGATTTGGCCGTTCGGCGGCGAGCCGGGTCGTTTGGGGCTCCGAATGGGGAGTTTGGGTGGTGGGTTGGGAGAGAGCTCCGGGAATAGAGATGGGTCGTTGGAGGAATCGACGGTGACGGAGCAGAGTGGCGGCGGCGGCGGAAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAGTCTTCTAAGATGGTTTCTACTAGTAGTGCTAATGGCTTGAAAAATTCGAGTGGGAAACGGATGAAGTTAGAGGGATCTAGAAACGAAAACGGCAATTCTAAAGCTGAAGTTGAAACAAGTTCAGGGGCTGATGACAAGCCAGAGGAACAAAGTACTAAACCTTCTGAGCCAGCCAAGCAAGATTATATCCATGTGAGGGCGAGAAGGGGCCAAGCTACCGATAGCCACAGTCTCGCAGAGAGAGTAATGCACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

166

Amino Acids

17.47

Weight (kDa)

5.48

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
AclWI	GGATC	2 cut(s)	12, 325
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	56, 397
AfiI	CCNNNNNNNGG	2 cut(s)	83, 439
AgsI	TTSAA	2 cut(s)	283, 356
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	144, 231, 347, 458
AluI	AGCT	4 cut(s)	144, 231, 347, 458
Alw21I	GWGCWC	2 cut(s)	146, 233
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	2 cut(s)	12, 325
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	74, 451
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	3 cut(s)	47, 93, 148
AsuHPI	GGTGA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	3 cut(s)	108, 146, 233
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	146, 233
BccI	CCATC	2 cut(s)	152, 247
BceAI	ACGGC	2 cut(s)	61, 349
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	3 cut(s)	47, 93, 148
BcoDI	GTCTC	1 cut(s)	479
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	2 cut(s)	264, 321
BisI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
BlsI	GCNGC	6 cut(s)	40, 52, 86, 200, 203, 206
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	4 cut(s)	47, 62, 93, 148
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	3 cut(s)	6, 107, 452
BmrFI	CCNGG	4 cut(s)	47, 62, 93, 148
BpiI	GAAGAC	1 cut(s)	237
BpuMI	CCSGG	3 cut(s)	47, 93, 148
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 439
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	229, 244, 309
BseLI	CCNNNNNNNGG	2 cut(s)	83, 439
BseMII	CTCAG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	76, 453
BsiHKAI	GWGCWC	2 cut(s)	146, 233
BsiSI	CCGG	3 cut(s)	47, 92, 147
BslI	CCNNNNNNNGG	2 cut(s)	83, 439
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	76, 453
Bsp1286I	GDGCHC	3 cut(s)	108, 146, 233
Bsp143I	GATC	3 cut(s)	4, 15, 317
BspACI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
BspANI	GGCC	2 cut(s)	76, 453
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	3 cut(s)	6, 107, 452
BspPI	GGATC	2 cut(s)	12, 325
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	3 cut(s)	4, 15, 317
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	181, 473
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	89, 414
BstDEI	CTNAG	2 cut(s)	249, 408
BstF5I	GGATG	3 cut(s)	229, 244, 309
BstKTI	GATC	3 cut(s)	7, 18, 320
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	3 cut(s)	4, 15, 317
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 204, 418
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	4 cut(s)	45, 60, 91, 146
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	4, 317
BstYI	RGATCY	2 cut(s)	4, 317
BsuRI	GGCC	2 cut(s)	76, 453
BtsCI	GGATG	3 cut(s)	229, 244, 309
Cac8I	GCNNGC	2 cut(s)	89, 414
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	451
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	55, 396
CviAII	CATG	1 cut(s)	434
CviQI	GTAC	2 cut(s)	55, 396
DdeI	CTNAG	2 cut(s)	249, 408
DpnI	GATC	3 cut(s)	6, 17, 319
DpnII	GATC	3 cut(s)	4, 15, 317
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	80, 222
Ecl136II	GAGCTC	2 cut(s)	144, 231
Eco24I	GRGCYC	3 cut(s)	108, 146, 233
Eco53kI	GAGCTC	2 cut(s)	144, 231
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	2 cut(s)	144, 231
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	3 cut(s)	108, 146, 233
FaeI	CATG	1 cut(s)	437
FaiI	YATR	2 cut(s)	429, 435
FatI	CATG	1 cut(s)	433
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
FokI	GGATG	3 cut(s)	236, 251, 316
FriOI	GRGCYC	3 cut(s)	108, 146, 233
Fsp4HI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
FspBI	CTAG	2 cut(s)	264, 321
GluI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
HaeIII	GGCC	2 cut(s)	76, 453
HapII	CCGG	3 cut(s)	47, 92, 147
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	437
HinfI	GANTC	2 cut(s)	173, 242
HpaII	CCGG	3 cut(s)	47, 92, 147
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	110, 235, 409
Hpy188III	TCNNGA	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	204, 214, 414, 441
HpyCH4III	ACNGT	2 cut(s)	181, 473
HpyCH4V	TGCA	1 cut(s)	493
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 204, 418
HpyF3I	CTNAG	2 cut(s)	249, 408
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	4, 15, 317
LmnI	GCTCC	4 cut(s)	111, 149, 187, 236
LpnPI	CCDG	8 cut(s)	47, 60, 74, 105, 160, 351, 396, 426
MaeI	CTAG	2 cut(s)	264, 321
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	6, 17, 319
MboI	GATC	3 cut(s)	4, 15, 317
MboII	GAAGA	2 cut(s)	226, 237
MflI	RGATCY	2 cut(s)	4, 317
MhlI	GDGCHC	3 cut(s)	108, 146, 233
MluCI	AATT	2 cut(s)	286, 337
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	16, 18, 163, 210, 229, 307, 379, 432
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	3 cut(s)	47, 92, 147
MspR9I	CCNGG	4 cut(s)	47, 62, 93, 148
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	47, 204, 418
NciI	CCSGG	3 cut(s)	47, 93, 148
NdeII	GATC	3 cut(s)	4, 15, 317
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	3 cut(s)	6, 107, 452
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	40, 52, 86, 200, 203, 206
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp124BI	GAGCTC	2 cut(s)	146, 233
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	3 cut(s)	6, 107, 452
PspPI	GGNCC	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	4, 317
RsaI	GTAC	2 cut(s)	56, 397
RsaNI	GTAC	2 cut(s)	55, 396
SacI	GAGCTC	2 cut(s)	146, 233
SatI	GCNGC	6 cut(s)	39, 51, 85, 199, 202, 205
Sau3AI	GATC	3 cut(s)	4, 15, 317
Sau96I	GGNCC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	4 cut(s)	47, 62, 93, 148
SduI	GDGCHC	3 cut(s)	108, 146, 233
SetI	ASST	5 cut(s)	146, 233, 349, 406, 460
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	2 cut(s)	286, 337
SsiI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
SspMI	CTAG	2 cut(s)	264, 321
SstI	GAGCTC	2 cut(s)	146, 233
StyD4I	CCNGG	4 cut(s)	45, 60, 91, 146
TaaI	ACNGT	2 cut(s)	181, 473
TaqI	TCGA	2 cut(s)	176, 290
TasI	AATT	2 cut(s)	286, 337
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	6 cut(s)	41, 53, 87, 201, 204, 207
TfiI	GAWTC	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	2 cut(s)	200, 316
XapI	RAATTY	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	320
XspI	CTAG	2 cut(s)	264, 321
ZrmI	AGTACT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.