Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

2155792 .. 2158763

Gene Structure 2972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGATCCTCCGCTGATCAACGAGGCGTCTTTCTCGGCGGCGAACCCGGCGGCGTACAGCCTGGCGGAGATTTGGCCGTTCGGCGGCGAGCCGGGTCGTTTGGGGCTCCGAATGGGGAGTTTGGGTGGTGGGTTGGGAGAGAGCTCCGGGAATAGAGATGGGTCGTTGGAGGAATCGACGGTGACGGAGCAGAGTGGCGGCGGCGGCGGAAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAGTCTTCTAAGATGGTTTCTACTAGTAGTGCTAATGGCTTGAAAAATTCGAGTGGGAAACGGATGAAGTTAGAGGGATCTAGAAACGAAAACGGCAATTCTAAAGCTGAAGTTGAAACAAGTTCAGGGGCTGATGACAAGCCAGAGGAACAAAGTACTAAACCTTCTGAGCCAGCCAAGCAAGATTATATCCATGTGAGGGCGAGAAGGGGCCAAGCTACTGATAGCCACAGTCTCGCAGAGAGAGCAAGGAGAGAAAAGATCAGCGAGAGGATGAAAATTCTTCAAGATTTGGTTCCCGGATGTAATAAGGTTATTGGGAAAGCACTTGTTCTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAAGCTTGAATCAGTCAATTCAAGGGTGAACATGAATCCCACCATTGAAGCGTTTCCTTCAAAAGATCAATTTGATGCAGCTACGTTGTTATTTGGATCACACACAGCAAGGGAGTATGGGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGGTTGGTGGTAGCTTTGAAAGAACAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

271

Amino Acids

29.24

Weight (kDa)

5.74

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	156 - 203	4e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	161 - 206	1.7e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	775
AciI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
AclWI	GGATC	3 cut(s)	12, 325, 736
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	286, 519
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	56, 397
AfiI	CCNNNNNNNGG	2 cut(s)	83, 439
AgsI	TTSAA	9 cut(s)	283, 356, 527, 634, 641, 654, 680, 693, 803
AhlI	ACTAGT	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	7 cut(s)	144, 231, 347, 458, 637, 713, 798
AluI	AGCT	7 cut(s)	144, 231, 347, 458, 637, 713, 798
Alw21I	GWGCWC	2 cut(s)	146, 233
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	3 cut(s)	12, 325, 736
AlwNI	CAGNNNCTG	2 cut(s)	371, 604
AoxI	GGCC	2 cut(s)	74, 451
ApeKI	GCWGC	3 cut(s)	607, 710, 775
ApoI	RAATTY	2 cut(s)	286, 519
AseI	ATTAAT	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	451
AsuC2I	CCSGG	4 cut(s)	47, 93, 148, 540
AsuHPI	GGTGA	2 cut(s)	193, 670
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	4 cut(s)	108, 146, 233, 761
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	146, 233
BbvI	GCAGC	3 cut(s)	619, 722, 762
BccI	CCATC	2 cut(s)	152, 247
BceAI	ACGGC	2 cut(s)	61, 349
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	4 cut(s)	47, 93, 148, 540
BcoDI	GTCTC	1 cut(s)	479
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	2 cut(s)	264, 321
BfmI	CTRYAG	1 cut(s)	605
BfoI	RGCGCY	1 cut(s)	613
BfuAI	ACCTGC	1 cut(s)	775
BisI	GCNGC	9 cut(s)	39, 51, 85, 199, 202, 205, 608, 711, 776
BlsI	GCNGC	9 cut(s)	40, 52, 86, 200, 203, 206, 609, 712, 777
BmcAI	AGTACT	1 cut(s)	397
Bme1390I	CCNGG	5 cut(s)	47, 62, 93, 148, 540
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	4 cut(s)	6, 107, 452, 537
BmrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 540
BmsI	GCATC	1 cut(s)	697
BpiI	GAAGAC	1 cut(s)	237
BpuMI	CCSGG	4 cut(s)	47, 93, 148, 540
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 439
Bse1I	ACTGG	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	6 cut(s)	229, 244, 309, 519, 548, 594
BseLI	CCNNNNNNNGG	2 cut(s)	83, 439
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	598
BseXI	GCAGC	3 cut(s)	619, 722, 762
BshFI	GGCC	2 cut(s)	76, 453
BsiHKAI	GWGCWC	2 cut(s)	146, 233
BsiSI	CCGG	4 cut(s)	47, 92, 147, 540
BslI	CCNNNNNNNGG	2 cut(s)	83, 439
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	76, 453
Bsp1286I	GDGCHC	4 cut(s)	108, 146, 233, 761
Bsp143I	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
BspACI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
BspANI	GGCC	2 cut(s)	76, 453
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	4 cut(s)	6, 107, 452, 537
BspMAI	CTGCAG	1 cut(s)	609
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	3 cut(s)	12, 325, 736
BsrI	ACTGG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
BssNI	GRCGYC	1 cut(s)	26
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	181, 473
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	4 cut(s)	89, 414, 761, 765
BstDEI	CTNAG	2 cut(s)	249, 408
BstF5I	GGATG	6 cut(s)	229, 244, 309, 519, 548, 594
BstH2I	RGCGCY	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	6 cut(s)	7, 18, 320, 504, 700, 731
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 204, 418, 485, 760, 781
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	5 cut(s)	45, 60, 91, 146, 538
BstSFI	CTRYAG	1 cut(s)	605
BstV1I	GCAGC	3 cut(s)	619, 722, 762
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	4, 317
BstYI	RGATCY	2 cut(s)	4, 317
BsuRI	GGCC	2 cut(s)	76, 453
BtsCI	GGATG	6 cut(s)	229, 244, 309, 519, 548, 594
BtsI	GCAGTG	1 cut(s)	602
BtsIMutI	CAGTG	1 cut(s)	602
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	4 cut(s)	89, 414, 761, 765
CaiI	CAGNNNCTG	2 cut(s)	371, 604
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	451
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	55, 396
CviAII	CATG	2 cut(s)	434, 664
CviQI	GTAC	2 cut(s)	55, 396
DdeI	CTNAG	2 cut(s)	249, 408
DpnI	GATC	6 cut(s)	6, 17, 319, 503, 699, 730
DpnII	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	2 cut(s)	80, 222
Ecl136II	GAGCTC	2 cut(s)	144, 231
Eco24I	GRGCYC	4 cut(s)	108, 146, 233, 761
Eco53kI	GAGCTC	2 cut(s)	144, 231
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	2 cut(s)	144, 231
EcoRII	CCWGG	1 cut(s)	60
EcoT38I	GRGCYC	4 cut(s)	108, 146, 233, 761
FaeI	CATG	2 cut(s)	437, 667
FaiI	YATR	7 cut(s)	429, 435, 665, 750, 780, 782, 814
FatI	CATG	2 cut(s)	433, 663
FauNDI	CATATG	1 cut(s)	780
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	9 cut(s)	39, 51, 85, 199, 202, 205, 608, 711, 776
FokI	GGATG	6 cut(s)	236, 251, 316, 526, 555, 581
FriOI	GRGCYC	4 cut(s)	108, 146, 233, 761
Fsp4HI	GCNGC	9 cut(s)	39, 51, 85, 199, 202, 205, 608, 711, 776
FspBI	CTAG	2 cut(s)	264, 321
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	9 cut(s)	39, 51, 85, 199, 202, 205, 608, 711, 776
HaeII	RGCGCY	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	76, 453
HapII	CCGG	4 cut(s)	47, 92, 147, 540
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	612
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	437, 667
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	4 cut(s)	173, 242, 641, 667
HpaII	CCGG	4 cut(s)	47, 92, 147, 540
HphI	GGTGA	2 cut(s)	193, 670
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	3 cut(s)	110, 235, 409
Hpy188III	TCNNGA	3 cut(s)	321, 527, 575
Hpy8I	GTNNAC	1 cut(s)	661
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	5 cut(s)	204, 214, 414, 441, 699
HpyCH4III	ACNGT	2 cut(s)	181, 473
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	4 cut(s)	607, 710, 778, 784
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 204, 418, 485, 760, 781
HpyF3I	CTNAG	2 cut(s)	249, 408
HpySE526I	ACGT	1 cut(s)	716
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	437, 667
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
LmnI	GCTCC	4 cut(s)	111, 149, 187, 236
Lsp1109I	GCAGC	3 cut(s)	619, 722, 762
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	2 cut(s)	264, 321
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	2 cut(s)	181, 600
MalI	GATC	6 cut(s)	6, 17, 319, 503, 699, 730
MboI	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
MboII	GAAGA	3 cut(s)	226, 237, 515
MflI	RGATCY	2 cut(s)	4, 317
MhlI	GDGCHC	4 cut(s)	108, 146, 233, 761
MluCI	AATT	6 cut(s)	286, 337, 519, 589, 649, 701
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	16, 18, 163, 210, 229, 307, 379, 432, 504
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	1 cut(s)	588
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	4 cut(s)	47, 92, 147, 540
MspR9I	CCNGG	5 cut(s)	47, 62, 93, 148, 540
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	6 cut(s)	47, 204, 418, 485, 760, 781
NciI	CCSGG	4 cut(s)	47, 93, 148, 540
NdeI	CATATG	1 cut(s)	780
NdeII	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
NlaIII	CATG	2 cut(s)	437, 667
NlaIV	GGNNCC	4 cut(s)	6, 107, 452, 537
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	181, 600
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	173, 641, 667
PfoI	TCCNGGA	2 cut(s)	146, 538
PkrI	GCNGC	9 cut(s)	40, 52, 86, 200, 203, 206, 609, 712, 777
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	588
Psp124BI	GAGCTC	2 cut(s)	146, 233
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	6, 107, 452, 537
PspPI	GGNCC	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	609
PstNI	CAGNNNCTG	2 cut(s)	371, 604
PsuI	RGATCY	2 cut(s)	4, 317
RsaI	GTAC	2 cut(s)	56, 397
RsaNI	GTAC	2 cut(s)	55, 396
SacI	GAGCTC	2 cut(s)	146, 233
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	9 cut(s)	39, 51, 85, 199, 202, 205, 608, 711, 776
Sau3AI	GATC	6 cut(s)	4, 15, 317, 501, 697, 728
Sau96I	GGNCC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	397
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 540
SduI	GDGCHC	4 cut(s)	108, 146, 233, 761
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	605
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	6 cut(s)	286, 337, 519, 589, 649, 701
SsiI	CCGC	9 cut(s)	11, 38, 50, 65, 84, 198, 201, 204, 207
SspMI	CTAG	2 cut(s)	264, 321
SstI	GAGCTC	2 cut(s)	146, 233
StyD4I	CCNGG	5 cut(s)	45, 60, 91, 146, 538
TaaI	ACNGT	2 cut(s)	181, 473
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	3 cut(s)	176, 290, 618
TasI	AATT	6 cut(s)	286, 337, 519, 589, 649, 701
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	6 cut(s)	41, 53, 87, 201, 204, 207
TfiI	GAWTC	3 cut(s)	173, 641, 667
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	2 cut(s)	181, 600
TseI	GCWGC	3 cut(s)	607, 710, 775
Tsp45I	GTSAC	2 cut(s)	181, 600
TspDTI	ATGAA	3 cut(s)	320, 530, 680
TspGWI	ACGGA	2 cut(s)	200, 316
TspRI	CASTG	1 cut(s)	609
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	2 cut(s)	286, 519
XbaI	TCTAGA	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	2 cut(s)	264, 321
ZrmI	AGTACT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.