Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

4855238 .. 4856457

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTACACCTACAAGATACAGAGTAATGCTAAATCGTATGGATCTACCACTGTACATTACTTTAGTCTAAAGAAGGAGGCGAAATTGCACTGTAGAAATGAACAATGTTTTGTAAGACATTTCAGTTTATTTACAAGACTACCACTGGTCCTCTCTGCCGCTAATCTTGATGCATACGTGTTGATGATTGTGGGAAGGAAGAACGATGGTAAAGGCGGTCTTTTCCGTTTCCTTCTCAAACCCTCCTTGCCTCTTCCGTCTCACAGACCCGACGAGAACGACACAGACGGTCTCGCGTCCATCCTATCCTCCTCTCACCGCCGTCTGCCTTCCCTCGCCTATGTCGTCTTACTCCATCGTTTGCGTCATGGAGGCCCGTGCGTGGTTTTTTGGGTGGGGATTTCAGATTTCAAGGGGGGGAGAGGCTGTGCTTCGTTTCGATCGGATCGAGCCTCTATGATTCGATTGGATCGAGGTGATGGGGACAACAAAGATTCAGGTGGAAAACGGGTGAAATTAGCAAGATCCAGTAATGAAAATGGCAGTTTGAAGGTTGAAGTTGAAGAAAGTTCAGCTGCTGGTGACAACAAGCCAGCTGAAGAAAACTCTAAACCTTCCGAGCCACCCAAGCAAGACTATATCCATGTCAGGGCAAGAAGGGTACAAGCTACATATAGCCACAGTCTAGCCGAGAGAGCAATGCACTTTTGGTCCTTTAAAATTTTCAATATAAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

247

Amino Acids

27.64

Weight (kDa)

9.85

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	159, 216, 319
AclWI	GGATC	4 cut(s)	49, 453, 477, 519
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	3 cut(s)	5, 54, 663
AfiI	CCNNNNNNNGG	2 cut(s)	382, 649
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	5 cut(s)	412, 550, 557, 563, 727
AluBI	AGCT	3 cut(s)	575, 596, 668
AluI	AGCT	3 cut(s)	575, 596, 668
Alw26I	GTCTC	2 cut(s)	264, 296
AlwI	GGATC	4 cut(s)	49, 453, 477, 519
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	720
AspS9I	GGNCC	3 cut(s)	148, 374, 711
AsuHPI	GGTGA	4 cut(s)	308, 488, 523, 593
AvaII	GGWCC	2 cut(s)	148, 711
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	4 cut(s)	200, 308, 363, 473
BceAI	ACGGC	1 cut(s)	306
BcoDI	GTCTC	2 cut(s)	264, 296
BfaI	CTAG	2 cut(s)	686, 739
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	159, 576
BlsI	GCNGC	2 cut(s)	160, 577
Bme18I	GGWCC	2 cut(s)	148, 711
BmgT120I	GGNCC	3 cut(s)	148, 374, 711
BmsI	GCATC	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 649
Bse1I	ACTGG	2 cut(s)	150, 528
Bse3DI	GCAATG	1 cut(s)	705
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	382, 649
BseMI	GCAATG	1 cut(s)	705
BseNI	ACTGG	2 cut(s)	150, 528
BseRI	GAGGAG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	375
BsiEI	CGRYCG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	382, 649
BsmAI	GTCTC	2 cut(s)	264, 296
BsmBI	CGTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	296
Bsp1407I	TGTACA	2 cut(s)	3, 52
Bsp143I	GATC	5 cut(s)	41, 440, 445, 469, 524
BspACI	CCGC	3 cut(s)	159, 216, 319
BspANI	GGCC	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	296
BspPI	GGATC	4 cut(s)	49, 453, 477, 519
BspTNI	GGTCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	705
BsrGI	TGTACA	2 cut(s)	3, 52
BsrI	ACTGG	2 cut(s)	150, 528
BssMI	GATC	5 cut(s)	41, 440, 445, 469, 524
Bst4CI	ACNGT	4 cut(s)	52, 92, 290, 683
Bst6I	CTCTTC	1 cut(s)	258
BstAUI	TGTACA	2 cut(s)	3, 52
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	594
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	5 cut(s)	44, 443, 448, 472, 527
BstMAI	GTCTC	2 cut(s)	264, 296
BstMBI	GATC	5 cut(s)	41, 440, 445, 469, 524
BstMCI	CGRYCG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	2 cut(s)	628, 695
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	562
BstX2I	RGATCY	2 cut(s)	41, 524
BstYI	RGATCY	2 cut(s)	41, 524
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	48, 88, 143
Cac8I	GCNNGC	1 cut(s)	594
CaiI	CAGNNNCTG	1 cut(s)	578
Cfr13I	GGNCC	3 cut(s)	148, 374, 711
CseI	GACGC	2 cut(s)	285, 353
Csp6I	GTAC	3 cut(s)	4, 53, 662
CviAII	CATG	2 cut(s)	368, 644
CviQI	GTAC	3 cut(s)	4, 53, 662
DpnI	GATC	5 cut(s)	43, 442, 447, 471, 526
DpnII	GATC	5 cut(s)	41, 440, 445, 469, 524
DraI	TTTAAA	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	148, 711
Eco57I	CTGAAG	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	2 cut(s)	371, 647
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	2 cut(s)	367, 643
Fnu4HI	GCNGC	2 cut(s)	159, 576
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	159, 576
FspBI	CTAG	2 cut(s)	686, 739
GluI	GCNGC	2 cut(s)	159, 576
HaeIII	GGCC	1 cut(s)	375
HgaI	GACGC	2 cut(s)	285, 353
Hin1II	CATG	2 cut(s)	371, 647
HinfI	GANTC	3 cut(s)	460, 494, 735
HphI	GGTGA	4 cut(s)	308, 488, 523, 593
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	406, 445, 619
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	7 cut(s)	67, 189, 242, 339, 544, 624, 651
HpyCH4III	ACNGT	4 cut(s)	52, 92, 290, 683
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	88, 173, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	628, 695
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	371, 647
Kzo9I	GATC	5 cut(s)	41, 440, 445, 469, 524
LpnPI	CCDG	6 cut(s)	131, 483, 541, 564, 606, 634
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	2 cut(s)	686, 739
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	5 cut(s)	43, 442, 447, 471, 526
MboI	GATC	5 cut(s)	41, 440, 445, 469, 524
MboII	GAAGA	4 cut(s)	211, 245, 575, 611
MflI	RGATCY	2 cut(s)	41, 524
MluCI	AATT	3 cut(s)	83, 515, 720
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	1 cut(s)	717
MspA1I	CMGCKG	2 cut(s)	575, 596
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	628, 695
NdeII	GATC	5 cut(s)	41, 440, 445, 469, 524
NlaIII	CATG	2 cut(s)	371, 647
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	3 cut(s)	342, 445, 469
PfeI	GAWTC	3 cut(s)	460, 494, 735
PkrI	GCNGC	2 cut(s)	160, 577
Ple19I	CGATCG	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	148, 374, 711
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	41, 524
PvuI	CGATCG	1 cut(s)	443
PvuII	CAGCTG	2 cut(s)	575, 596
RsaI	GTAC	3 cut(s)	5, 54, 663
RsaNI	GTAC	3 cut(s)	4, 53, 662
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	2 cut(s)	159, 576
Sau3AI	GATC	5 cut(s)	41, 440, 445, 469, 524
Sau96I	GGNCC	3 cut(s)	148, 374, 711
SetI	ASST	9 cut(s)	11, 180, 478, 502, 555, 577, 598, 616, 670
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	2 cut(s)	148, 711
Sse9I	AATT	3 cut(s)	83, 515, 720
SsiI	CCGC	3 cut(s)	159, 216, 319
SspMI	CTAG	2 cut(s)	686, 739
TaaI	ACNGT	4 cut(s)	52, 92, 290, 683
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	4 cut(s)	439, 448, 463, 472
TasI	AATT	3 cut(s)	83, 515, 720
TatI	WGTACW	2 cut(s)	3, 52
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	3 cut(s)	460, 494, 735
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TscAI	CASTG	3 cut(s)	55, 95, 150
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	2 cut(s)	114, 549
TspGWI	ACGGA	2 cut(s)	215, 246
TspRI	CASTG	3 cut(s)	55, 95, 150
VpaK11BI	GGWCC	2 cut(s)	148, 711
XapI	RAATTY	1 cut(s)	720
XspI	CTAG	2 cut(s)	686, 739
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.