Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Forward (+)

65000521 .. 65003254

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGATCCTCCGCTGATCAACGAGGCGTCTTTCTCGGCGGCGAACCCGGAGGAGTACAGCCTGGCCGAGATTTGGCCGTTCGGCGGCGAGCCGGGTCGGTTGGGGCTCCGAATGGGGAGTTTGGGTGGTGGGTTGGGAGAGAGCTCCGGGAATAGAGATGGGTCGTTGGAGGAATCGACGGTGACGGAGCAGAGCGGCGGCGGAAGGAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCTAAGATGGTTTCTACTAGTAGTGCTAATGGCTTGAAAAAATCGAGTGGGAAACGGATGAAGTTAGAGGGATCTAGAAACGAAAACGGCAATTCTAAAGCTGAAGTTGAAACAAGTTCAGGGGCTGATGACAAGCCAGAGGAACAAAGTACTAAACCGTCTGAGCCAGCCAAGCTAGATTATATCCATGTGAGGGCGAGAAGGGGCCAAGCTACCGATAGCCACAGTCTCGCAGAGAGAGCAAGGAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTGGTTCCCGGATGTAATAAGGTTATTGGGAAAGCACTTGTTCTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAAGCTTGAAGCAGTCAATTCAAGGGTGAACATAAATCCTGCCATTGAAGCGTTTCCTTCAAAAGATCAATTTGATGCAGCTGCGTTGTTATTTGGATCACACACACCAAGGGAGTATCCGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGGTTGGTGGTAGCTTTGAAAGAACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

269

Amino Acids

29.24

Weight (kDa)

5.6

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	154 - 201	4e-09	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	159 - 204	1.8e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	769
AccBSI	CCGCTC	1 cut(s)	195
AciI	CCGC	7 cut(s)	11, 38, 84, 195, 198, 201, 746
AclWI	GGATC	3 cut(s)	12, 319, 730
AcoI	YGGCCR	2 cut(s)	63, 74
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	56, 391
AfiI	CCNNNNNNNGG	3 cut(s)	72, 83, 433
AgsI	TTSAA	9 cut(s)	277, 350, 521, 628, 635, 648, 674, 687, 797
AhlI	ACTAGT	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	8 cut(s)	144, 225, 341, 415, 452, 631, 707, 792
AluI	AGCT	8 cut(s)	144, 225, 341, 415, 452, 631, 707, 792
Alw21I	GWGCWC	2 cut(s)	146, 227
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	3 cut(s)	12, 319, 730
AlwNI	CAGNNNCTG	2 cut(s)	365, 598
AoxI	GGCC	3 cut(s)	63, 74, 445
ApeKI	GCWGC	4 cut(s)	601, 704, 707, 769
ApoI	RAATTY	1 cut(s)	513
AseI	ATTAAT	1 cut(s)	582
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	4 cut(s)	47, 93, 148, 534
AsuHPI	GGTGA	2 cut(s)	193, 664
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	4 cut(s)	108, 146, 227, 755
Bbv12I	GWGCWC	2 cut(s)	146, 227
BbvI	GCAGC	4 cut(s)	613, 694, 716, 756
BccI	CCATC	2 cut(s)	152, 241
BceAI	ACGGC	2 cut(s)	61, 343
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	753
BclI	TGATCA	1 cut(s)	15
BcnI	CCSGG	4 cut(s)	47, 93, 148, 534
BcoDI	GTCTC	1 cut(s)	473
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	3 cut(s)	258, 315, 416
BfmI	CTRYAG	1 cut(s)	599
BfoI	RGCGCY	1 cut(s)	607
BfuAI	ACCTGC	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	753
BisI	GCNGC	8 cut(s)	39, 85, 196, 199, 602, 705, 708, 770
BlsI	GCNGC	8 cut(s)	40, 86, 197, 200, 603, 706, 709, 771
BmcAI	AGTACT	1 cut(s)	391
Bme1390I	CCNGG	5 cut(s)	47, 62, 93, 148, 534
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	6, 107, 446, 531
BmrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 534
BmsI	GCATC	1 cut(s)	691
BpuMI	CCSGG	4 cut(s)	47, 93, 148, 534
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	228, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 83, 433
Bse1I	ACTGG	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	228, 734
BseGI	GGATG	6 cut(s)	223, 238, 303, 513, 542, 588
BseLI	CCNNNNNNNGG	3 cut(s)	72, 83, 433
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	613, 694, 716, 756
BshFI	GGCC	3 cut(s)	65, 76, 447
BsiHKAI	GWGCWC	2 cut(s)	146, 227
BsiSI	CCGG	4 cut(s)	47, 92, 147, 534
BslI	CCNNNNNNNGG	3 cut(s)	72, 83, 433
BsmAI	GTCTC	1 cut(s)	473
BsnI	GGCC	3 cut(s)	65, 76, 447
Bsp1286I	GDGCHC	4 cut(s)	108, 146, 227, 755
Bsp143I	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
BspACI	CCGC	7 cut(s)	11, 38, 84, 195, 198, 201, 746
BspANI	GGCC	3 cut(s)	65, 76, 447
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	4 cut(s)	6, 107, 446, 531
BspMAI	CTGCAG	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	769
BspPI	GGATC	3 cut(s)	12, 319, 730
BsrBI	CCGCTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	592
BssECI	CCNNGG	2 cut(s)	228, 734
BssMI	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	181, 399, 467
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	4 cut(s)	89, 408, 755, 759
BstDEI	CTNAG	2 cut(s)	243, 402
BstF5I	GGATG	6 cut(s)	223, 238, 303, 513, 542, 588
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	6 cut(s)	7, 18, 314, 498, 694, 725
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
BstMWI	GCNNNNNNNGC	5 cut(s)	412, 479, 674, 754, 775
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	5 cut(s)	45, 60, 91, 146, 532
BstSFI	CTRYAG	1 cut(s)	599
BstV1I	GCAGC	4 cut(s)	613, 694, 716, 756
BstX2I	RGATCY	2 cut(s)	4, 311
BstYI	RGATCY	2 cut(s)	4, 311
BsuI	GTATCC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	65, 76, 447
BtsCI	GGATG	6 cut(s)	223, 238, 303, 513, 542, 588
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	2 cut(s)	505, 596
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	4 cut(s)	89, 408, 755, 759
CaiI	CAGNNNCTG	2 cut(s)	365, 598
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	445
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	55, 390
CviAII	CATG	1 cut(s)	428
CviQI	GTAC	2 cut(s)	55, 390
DdeI	CTNAG	2 cut(s)	243, 402
DpnI	GATC	6 cut(s)	6, 17, 313, 497, 693, 724
DpnII	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
EaeI	YGGCCR	2 cut(s)	63, 74
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	216
Ecl136II	GAGCTC	2 cut(s)	144, 225
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	4 cut(s)	108, 146, 227, 755
Eco53kI	GAGCTC	2 cut(s)	144, 225
Eco57I	CTGAAG	1 cut(s)	363
EcoICRI	GAGCTC	2 cut(s)	144, 225
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	734
EcoT38I	GRGCYC	4 cut(s)	108, 146, 227, 755
ErhI	CCWWGG	1 cut(s)	734
FaeI	CATG	1 cut(s)	431
FaiI	YATR	6 cut(s)	423, 429, 659, 774, 776, 808
FatI	CATG	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	774
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	8 cut(s)	39, 85, 196, 199, 602, 705, 708, 770
FokI	GGATG	6 cut(s)	230, 245, 310, 520, 549, 575
FriOI	GRGCYC	4 cut(s)	108, 146, 227, 755
Fsp4HI	GCNGC	8 cut(s)	39, 85, 196, 199, 602, 705, 708, 770
FspBI	CTAG	3 cut(s)	258, 315, 416
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	8 cut(s)	39, 85, 196, 199, 602, 705, 708, 770
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	3 cut(s)	65, 76, 447
HapII	CCGG	4 cut(s)	47, 92, 147, 534
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	606
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	2 cut(s)	173, 236
HpaII	CCGG	4 cut(s)	47, 92, 147, 534
HphI	GGTGA	2 cut(s)	193, 664
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188I	TCNGA	3 cut(s)	110, 229, 403
Hpy188III	TCNNGA	3 cut(s)	315, 521, 569
Hpy8I	GTNNAC	1 cut(s)	655
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	198, 208, 435, 693
HpyCH4III	ACNGT	3 cut(s)	181, 399, 467
HpyCH4V	TGCA	4 cut(s)	601, 704, 772, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	412, 479, 674, 754, 775
HpyF3I	CTNAG	2 cut(s)	243, 402
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
LmnI	GCTCC	4 cut(s)	111, 149, 187, 230
Lsp1109I	GCAGC	4 cut(s)	613, 694, 716, 756
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	3 cut(s)	258, 315, 416
MaeIII	GTNAC	2 cut(s)	181, 594
MalI	GATC	6 cut(s)	6, 17, 313, 497, 693, 724
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
MboII	GAAGA	3 cut(s)	220, 231, 509
MflI	RGATCY	2 cut(s)	4, 311
MhlI	GDGCHC	4 cut(s)	108, 146, 227, 755
MluCI	AATT	5 cut(s)	331, 513, 583, 643, 695
MmeI	TCCRAC	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	13, 707
MspI	CCGG	4 cut(s)	47, 92, 147, 534
MspR9I	CCNGG	5 cut(s)	47, 62, 93, 148, 534
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	412, 479, 674, 754, 775
NciI	CCSGG	4 cut(s)	47, 93, 148, 534
NdeI	CATATG	1 cut(s)	774
NdeII	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	4 cut(s)	6, 107, 446, 531
NmeAIII	GCCGAG	2 cut(s)	14, 91
NmuCI	GTSAC	2 cut(s)	181, 594
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	173, 236
PfoI	TCCNGGA	2 cut(s)	146, 532
PkrI	GCNGC	8 cut(s)	40, 86, 197, 200, 603, 706, 709, 771
PshBI	ATTAAT	1 cut(s)	582
Psp124BI	GAGCTC	2 cut(s)	146, 227
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	6, 107, 446, 531
PspPI	GGNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	603
PstNI	CAGNNNCTG	2 cut(s)	365, 598
PsuI	RGATCY	2 cut(s)	4, 311
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	2 cut(s)	56, 391
RsaNI	GTAC	2 cut(s)	55, 390
SacI	GAGCTC	2 cut(s)	146, 227
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	8 cut(s)	39, 85, 196, 199, 602, 705, 708, 770
Sau3AI	GATC	6 cut(s)	4, 15, 311, 495, 691, 722
Sau96I	GGNCC	1 cut(s)	445
ScaI	AGTACT	1 cut(s)	391
ScrFI	CCNGG	5 cut(s)	47, 62, 93, 148, 534
SduI	GDGCHC	4 cut(s)	108, 146, 227, 755
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	599
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	5 cut(s)	331, 513, 583, 643, 695
SsiI	CCGC	7 cut(s)	11, 38, 84, 195, 198, 201, 746
SspMI	CTAG	3 cut(s)	258, 315, 416
SstI	GAGCTC	2 cut(s)	146, 227
StyD4I	CCNGG	5 cut(s)	45, 60, 91, 146, 532
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	3 cut(s)	181, 399, 467
TaqI	TCGA	3 cut(s)	176, 284, 612
TasI	AATT	5 cut(s)	331, 513, 583, 643, 695
TatI	WGTACW	2 cut(s)	54, 389
TauI	GCSGC	4 cut(s)	41, 87, 198, 201
TfiI	GAWTC	2 cut(s)	173, 236
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	505, 603
TseFI	GTSAC	2 cut(s)	181, 594
TseI	GCWGC	4 cut(s)	601, 704, 707, 769
Tsp45I	GTSAC	2 cut(s)	181, 594
TspDTI	ATGAA	3 cut(s)	249, 314, 524
TspGWI	ACGGA	2 cut(s)	200, 310
TspRI	CASTG	2 cut(s)	505, 603
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	1 cut(s)	513
XbaI	TCTAGA	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	3 cut(s)	258, 315, 416
ZrmI	AGTACT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.