Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002571

Physical Location & Seq

Genomic Coordinates Reverse (-)

35843816 .. 35855777

Gene Structure 11962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG295000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGGCAGCTTTCGCATAAGAGGAAGGTGACAGTTCAGGAGTTCAAGGGGAAACCATTGGTGTCGTTGAGGGAGTTTTTTACTAAAGAAGGCAAGGAGCTCCCTACTTCTAAAGAATGTATGCAGGGTTTGACTCCTATAATGTGTTTGAGAAAATCTAAAAATGGAATACTGTTTTTGGTGGTGGAGTATTATTTCAGTGATCTGAACTTAGCTACTACTGATCATCTTATGAGGTTCATAAACAAAGACCCTGAAGGATTTGTGCCAATATCTGTTGTTGCATCTTCCAAGAAAATTAAGGCCCTCGGAAATGCTTCCTCTGGCATGGGTGTTGCTGAGGACTGCTGCAATACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTGTGGTAGAAAAGACTGGAGGCCCAGCTGAAAGTTATGATGATTTCACTGGTTCATTGCCTGAAAATGATTGCCGATATGCAATCTATGACTTTGATTTTGTCACTTCAGAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGTTTGTTTCTTTTGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGTGTTTCCTTCAAAAGATGTAGTTGTTGATTGTTGTAAAATGGCTGTTGAGAGATTTTGCTCCTCTAGTGACATCGAAGCGATTGATTTTCTGAGAAAATTACCATCATTACTTGAACAAAAGATTACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

302

Amino Acids

34.25

Weight (kDa)

8.23

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	3 - 38	1.5e-11	Transcriptional Coactivator p15 (PC4)
La	PF05383	62 - 105	6.5e-15	La domain
Cofilin_ADF	PF00241	109 - 204	8.8e-22	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62610 AT5G62610
fragaria_vesca	FvH4_5g15930 FvH4_5g15930 FvH4_5g15930
malus_domestica	MD06G1184400.v1.1 MD14G1190300.v1.1
prunus_persica	Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1 Prupe.5G183200_v2.0.a1
pyrus_communis	pycom02g03530 pycom06g16360 pycom14g15800 pycom15g07880
rosa_chinensis	RchiOBHm_Chr3g0480001 RchiOBHm_Chr4g0403251 RchiOBHm_Chr4g0405511 RchiOBHm_Chr5g0004951 RchiOBHm_Chr7g0180121
rosa_laevigata	RLG00000005291 RLG00000033379
rosa_multiflora	Rmu_co8134850.1_g000001 Rmu_ssc0000119.1_g000035
rosa_roxburghii	Rroxscaffold_3G00273110 Rroxscaffold_5G00374410
rosa_rugosa	Rorug03G0058400 Rorug03G0171100 Rorug06G0430700
rosa_samantha	Rh1CG130200 Rh3AG295000 Rh3CG073100 Rh7AG031200 Rh7BG031100 Rh7DG031700 Rh7DG200500
rosa_wichuraiana	Rw0G012070 Rw4G009590 Rw7G002590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	765
AcsI	RAATTY	1 cut(s)	612
AcuI	CTGAAG	3 cut(s)	276, 519, 602
AgsI	TTSAA	8 cut(s)	46, 590, 727, 734, 747, 773, 786, 890
AjnI	CCWGG	1 cut(s)	631
AluBI	AGCT	4 cut(s)	10, 100, 215, 455
AluI	AGCT	4 cut(s)	10, 100, 215, 455
Alw21I	GWGCWC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	3 cut(s)	303, 381, 448
ApeKI	GCWGC	3 cut(s)	7, 348, 700
ApoI	RAATTY	1 cut(s)	612
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AseI	ATTAAT	1 cut(s)	681
Asp700I	GAANNNNTTC	2 cut(s)	316, 777
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	2 cut(s)	304, 449
AsuHPI	GGTGA	2 cut(s)	40, 763
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	3 cut(s)	19, 335, 712
BccI	CCATC	1 cut(s)	886
BciT130I	CCWGG	1 cut(s)	633
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	2 cut(s)	368, 698
BfoI	RGCGCY	1 cut(s)	706
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	3 cut(s)	8, 349, 701
BlsI	GCNGC	3 cut(s)	9, 350, 702
Bme1390I	CCNGG	1 cut(s)	633
BmgT120I	GGNCC	2 cut(s)	304, 449
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	307
Bse1I	ACTGG	3 cut(s)	448, 481, 691
Bse3DI	GCAATG	2 cut(s)	482, 567
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	3 cut(s)	612, 641, 687
BseMI	GCAATG	2 cut(s)	482, 567
BseMII	CTCAG	2 cut(s)	330, 857
BseNI	ACTGG	3 cut(s)	448, 481, 691
BseRI	GAGGAG	1 cut(s)	826
BseXI	GCAGC	3 cut(s)	19, 335, 712
BseYI	CCCAGC	1 cut(s)	451
BshFI	GGCC	3 cut(s)	305, 383, 450
BsiHKAI	GWGCWC	1 cut(s)	102
BsnI	GGCC	3 cut(s)	305, 383, 450
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	4 cut(s)	202, 223, 558, 594
BspACI	CCGC	1 cut(s)	765
BspANI	GGCC	3 cut(s)	305, 383, 450
BspCNI	CTCAG	2 cut(s)	331, 858
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	2 cut(s)	372, 702
BspQI	GCTCTTC	1 cut(s)	545
BsrDI	GCAATG	2 cut(s)	482, 567
BsrI	ACTGG	3 cut(s)	448, 481, 691
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	4 cut(s)	202, 223, 558, 594
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	2 cut(s)	34, 174
Bst6I	CTCTTC	1 cut(s)	545
BstDEI	CTNAG	3 cut(s)	211, 339, 866
BstF5I	GGATG	3 cut(s)	612, 641, 687
BstH2I	RGCGCY	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	4 cut(s)	205, 226, 561, 597
BstMBI	GATC	4 cut(s)	202, 223, 558, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 552
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	2 cut(s)	368, 698
BstV1I	GCAGC	3 cut(s)	19, 335, 712
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	305, 383, 450
BtsCI	GGATG	3 cut(s)	612, 641, 687
BtsI	GCAGTG	1 cut(s)	695
BtsIMutI	CAGTG	3 cut(s)	205, 474, 695
CaiI	CAGNNNCTG	1 cut(s)	697
CfoI	GCGC	1 cut(s)	705
Cfr13I	GGNCC	2 cut(s)	304, 449
CviAII	CATG	3 cut(s)	328, 573, 757
CviJI	RGCY	9 cut(s)	10, 100, 215, 305, 383, 450, 455, 600, 818
CviKI_1	RGCY	9 cut(s)	10, 100, 215, 305, 383, 450, 455, 600, 818
DdeI	CTNAG	3 cut(s)	211, 339, 866
DpnI	GATC	4 cut(s)	204, 225, 560, 596
DpnII	GATC	4 cut(s)	202, 223, 558, 594
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	3 cut(s)	276, 519, 602
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	631
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	3 cut(s)	331, 576, 760
FalI	AAGNNNNNCTT	4 cut(s)	368, 400, 548, 580
FatI	CATG	3 cut(s)	327, 572, 756
FauI	CCCGC	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	8, 349, 701
FokI	GGATG	3 cut(s)	619, 648, 674
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	8, 349, 701
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	3 cut(s)	8, 349, 701
GsaI	CCCAGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	706
HaeIII	GGCC	3 cut(s)	305, 383, 450
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	3 cut(s)	331, 576, 760
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HinfI	GANTC	2 cut(s)	133, 760
HphI	GGTGA	2 cut(s)	40, 763
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	4 cut(s)	207, 311, 538, 867
Hpy188III	TCNNGA	2 cut(s)	38, 620
Hpy8I	GTNNAC	1 cut(s)	754
HpyAV	CCTTC	5 cut(s)	19, 83, 251, 373, 792
HpyCH4III	ACNGT	2 cut(s)	34, 174
HpyCH4V	TGCA	7 cut(s)	124, 284, 351, 370, 509, 572, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 552
HpyF3I	CTNAG	3 cut(s)	211, 339, 866
Hsp92II	CATG	3 cut(s)	331, 576, 760
HspAI	GCGC	1 cut(s)	703
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	202, 223, 558, 594
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	3 cut(s)	97, 105, 839
Lsp1109I	GCAGC	3 cut(s)	19, 335, 712
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	840
MaeIII	GTNAC	4 cut(s)	28, 529, 693, 842
MalI	GATC	4 cut(s)	204, 225, 560, 596
MboI	GATC	4 cut(s)	202, 223, 558, 594
MboII	GAAGA	7 cut(s)	279, 427, 430, 553, 556, 562, 608
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	6 cut(s)	297, 541, 612, 682, 742, 872
MlyI	GAGTC	1 cut(s)	127
MroXI	GAANNNNTTC	2 cut(s)	316, 777
MseI	TTAA	3 cut(s)	300, 402, 681
MslI	CAYNNNNRTG	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	13, 552
NdeII	GATC	4 cut(s)	202, 223, 558, 594
NlaIII	CATG	3 cut(s)	331, 576, 760
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	4 cut(s)	28, 529, 693, 842
PceI	AGGCCT	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	545
PdmI	GAANNNNTTC	2 cut(s)	316, 777
PfeI	GAWTC	1 cut(s)	760
PfoI	TCCNGGA	1 cut(s)	631
PkrI	GCNGC	3 cut(s)	9, 350, 702
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PshBI	ATTAAT	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	304, 449
PstI	CTGCAG	2 cut(s)	372, 702
PstNI	CAGNNNCTG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	558
PvuII	CAGCTG	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	773
SacI	GAGCTC	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	300, 402, 681
SatI	GCNGC	3 cut(s)	8, 349, 701
Sau3AI	GATC	4 cut(s)	202, 223, 558, 594
Sau96I	GGNCC	2 cut(s)	304, 449
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	9 cut(s)	12, 30, 102, 217, 239, 429, 457, 648, 732
SfaNI	GCATC	1 cut(s)	293
SfcI	CTRYAG	2 cut(s)	368, 698
SmiMI	CAYNNNNRTG	1 cut(s)	773
Sse9I	AATT	6 cut(s)	297, 541, 612, 682, 742, 872
SseBI	AGGCCT	1 cut(s)	383
SsiI	CCGC	1 cut(s)	765
SspMI	CTAG	1 cut(s)	840
SstI	GAGCTC	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	631
TaaI	ACNGT	2 cut(s)	34, 174
TaqI	TCGA	2 cut(s)	711, 849
TasI	AATT	6 cut(s)	297, 541, 612, 682, 742, 872
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	3 cut(s)	300, 402, 681
Tru9I	TTAA	3 cut(s)	300, 402, 681
TscAI	CASTG	3 cut(s)	205, 481, 702
TseFI	GTSAC	4 cut(s)	28, 529, 693, 842
TseI	GCWGC	3 cut(s)	7, 348, 700
Tsp45I	GTSAC	4 cut(s)	28, 529, 693, 842
TspDTI	ATGAA	6 cut(s)	229, 471, 556, 623, 773, 894
TspRI	CASTG	3 cut(s)	205, 481, 702
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	1 cut(s)	612
XmnI	GAANNNNTTC	2 cut(s)	316, 777
XspI	CTAG	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.