TPLATE-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01780 AT3G01780 |
| fragaria_vesca | FvH4_5g15940 |
| malus_domestica | MD06G1184100.v1.1 MD14G1190000.v1.1 |
| prunus_persica | Prupe.5G183000_v2.0.a1 |
| pyrus_communis | pycom06g16320 pycom06g16330 pycom14g15780 |
| rosa_chinensis | RchiOBHm_Chr7g0180111 |
| rosa_laevigata | RLG00000005292 |
| rosa_multiflora | Rmu_sc0017616.1_g000007 Rmu_ssc0000119.1_g000034 |
| rosa_roxburghii | Rroxscaffold_3G00273120 |
| rosa_rugosa | Rorug06G0430700 |
| rosa_samantha | Rh7AG031100 Rh7BG031000 Rh7CG033000 Rh7DG031600 |
| rosa_wichuraiana | Rw7G002580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2073 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 113, 275 |
| AatII | GACGTC | 1 cut(s) | 279 |
| Acc36I | ACCTGC | 2 cut(s) | 1114, 2073 |
| AccB1I | GGYRCC | 1 cut(s) | 907 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 495 |
| AccBSI | CCGCTC | 1 cut(s) | 39 |
| AccI | GTMKAC | 1 cut(s) | 678 |
| AccII | CGCG | 3 cut(s) | 435, 647, 773 |
| AccIII | TCCGGA | 1 cut(s) | 2943 |
| AcoI | YGGCCR | 2 cut(s) | 100, 1552 |
| AcsI | RAATTY | 8 cut(s) | 243, 637, 1662, 1687, 2395, 2721, 2768, 3080 |
| AcuI | CTGAAG | 2 cut(s) | 774, 3204 |
| AcyI | GRCGYC | 5 cut(s) | 276, 345, 534, 920, 1370 |
| AfaI | GTAC | 9 cut(s) | 770, 2005, 2484, 2520, 2810, 2818, 2990, 3176, 3499 |
| AfeI | AGCGCT | 1 cut(s) | 1218 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 222, 495, 1274, 1353, 1756, 1958, 2597, 2684, 2950 |
| AflIII | ACRYGT | 1 cut(s) | 2935 |
| AgeI | ACCGGT | 1 cut(s) | 2761 |
| AjnI | CCWGG | 3 cut(s) | 985, 3048, 3135 |
| Alw21I | GWGCWC | 7 cut(s) | 1747, 1773, 1930, 2415, 2564, 3448, 3465 |
| Alw26I | GTCTC | 9 cut(s) | 298, 490, 670, 1404, 1667, 2548, 2619, 2650, 3053 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1499, 1969 |
| Aor13HI | TCCGGA | 1 cut(s) | 2943 |
| Aor51HI | AGCGCT | 1 cut(s) | 1218 |
| ApoI | RAATTY | 8 cut(s) | 243, 637, 1662, 1687, 2395, 2721, 2768, 3080 |
| ArsI | GACNNNNNNTTYG | 3 cut(s) | 28, 129, 161 |
| AsiGI | ACCGGT | 1 cut(s) | 2761 |
| AspA2I | CCTAGG | 1 cut(s) | 1952 |
| AspLEI | GCGC | 5 cut(s) | 68, 284, 597, 1219, 1481 |
| AspS9I | GGNCC | 9 cut(s) | 31, 498, 747, 1557, 1657, 1792, 2784, 3004, 3398 |
| AsuC2I | CCSGG | 1 cut(s) | 2420 |
| AsuII | TTCGAA | 2 cut(s) | 948, 2553 |
| AvaII | GGWCC | 6 cut(s) | 31, 498, 1557, 1657, 1792, 3398 |
| AvrII | CCTAGG | 1 cut(s) | 1952 |
| AxyI | CCTNAGG | 1 cut(s) | 1815 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 3489 |
| BamHI | GGATCC | 4 cut(s) | 931, 1819, 2227, 2512 |
| BanI | GGYRCC | 1 cut(s) | 907 |
| BanII | GRGCYC | 2 cut(s) | 839, 2415 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2981, 3013 |
| BbsI | GAAGAC | 1 cut(s) | 3192 |
| Bbv12I | GWGCWC | 7 cut(s) | 1747, 1773, 1930, 2415, 2564, 3448, 3465 |
| BceAI | ACGGC | 8 cut(s) | 87, 116, 149, 275, 521, 2019, 2022, 2501 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 540, 574, 2144, 2178 |
| BciT130I | CCWGG | 3 cut(s) | 987, 3050, 3137 |
| BcnI | CCSGG | 1 cut(s) | 2420 |
| BcoDI | GTCTC | 9 cut(s) | 298, 490, 670, 1404, 1667, 2548, 2619, 2650, 3053 |
| BfaI | CTAG | 7 cut(s) | 1617, 1901, 1953, 2210, 2292, 2358, 3024 |
| BfmI | CTRYAG | 3 cut(s) | 2163, 2610, 3423 |
| BfoI | RGCGCY | 3 cut(s) | 69, 285, 1220 |
| BfuAI | ACCTGC | 2 cut(s) | 1114, 2073 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 63 |
| BglII | AGATCT | 2 cut(s) | 1711, 2754 |
| BlnI | CCTAGG | 1 cut(s) | 1952 |
| BlpI | GCTNAGC | 1 cut(s) | 1929 |
| Bme1390I | CCNGG | 4 cut(s) | 987, 2420, 3050, 3137 |
| Bme18I | GGWCC | 6 cut(s) | 31, 498, 1557, 1657, 1792, 3398 |
| BmgT120I | GGNCC | 9 cut(s) | 31, 498, 747, 1557, 1657, 1792, 2784, 3004, 3398 |
| BmrFI | CCNGG | 4 cut(s) | 987, 2420, 3050, 3137 |
| BmrI | ACTGGG | 3 cut(s) | 2226, 2693, 2781 |
| BmsI | GCATC | 9 cut(s) | 410, 513, 536, 1294, 2035, 2344, 2882, 3091, 3113 |
| BmuI | ACTGGG | 3 cut(s) | 2226, 2693, 2781 |
| BpiI | GAAGAC | 1 cut(s) | 3192 |
| BpmI | CTGGAG | 3 cut(s) | 68, 472, 3119 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2169 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1929 |
| Bpu14I | TTCGAA | 2 cut(s) | 948, 2553 |
| BpuEI | CTTGAG | 3 cut(s) | 1186, 2429, 2460 |
| BpuMI | CCSGG | 1 cut(s) | 2420 |
| BsaAI | YACGTR | 1 cut(s) | 1718 |
| BsaHI | GRCGYC | 5 cut(s) | 276, 345, 534, 920, 1370 |
| BsaI | GGTCTC | 2 cut(s) | 490, 670 |
| BsaJI | CCNNGG | 7 cut(s) | 415, 732, 783, 1455, 1952, 3049, 3136 |
| BsaWI | WCCGGW | 3 cut(s) | 2515, 2761, 2943 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 23, 53, 311, 341, 2679, 2709 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 222, 495, 1274, 1353, 1756, 1958, 2597, 2684, 2950 |
| Bse118I | RCCGGY | 3 cut(s) | 98, 154, 2761 |
| Bse1I | ACTGG | 9 cut(s) | 58, 1474, 1493, 2146, 2232, 2314, 2688, 2787, 2818 |
| Bse21I | CCTNAGG | 1 cut(s) | 1815 |
| Bse3DI | GCAATG | 1 cut(s) | 868 |
| BseAI | TCCGGA | 1 cut(s) | 2943 |
| BseBI | CCWGG | 3 cut(s) | 987, 3050, 3137 |
| BseDI | CCNNGG | 7 cut(s) | 415, 732, 783, 1455, 1952, 3049, 3136 |
| BseGI | GGATG | 9 cut(s) | 309, 425, 527, 895, 1309, 1437, 2071, 2470, 2906 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 222, 495, 1274, 1353, 1756, 1958, 2597, 2684, 2950 |
| BseMI | GCAATG | 1 cut(s) | 868 |
| BseMII | CTCAG | 9 cut(s) | 32, 1440, 1758, 1806, 1943, 2183, 2394, 2724, 2876 |
| BseNI | ACTGG | 9 cut(s) | 58, 1474, 1493, 2146, 2232, 2314, 2688, 2787, 2818 |
| BseRI | GAGGAG | 5 cut(s) | 62, 658, 1373, 2463, 3443 |
| BseX3I | CGGCCG | 1 cut(s) | 100 |
| BseYI | CCCAGC | 2 cut(s) | 1958, 3258 |
| BsgI | GTGCAG | 1 cut(s) | 2841 |
| Bsh1236I | CGCG | 3 cut(s) | 435, 647, 773 |
| Bsh1285I | CGRYCG | 3 cut(s) | 103, 765, 801 |
| BshNI | GGYRCC | 1 cut(s) | 907 |
| BshTI | ACCGGT | 1 cut(s) | 2761 |
| BsiEI | CGRYCG | 3 cut(s) | 103, 765, 801 |
| BsiHKAI | GWGCWC | 7 cut(s) | 1747, 1773, 1930, 2415, 2564, 3448, 3465 |
| BslFI | GGGAC | 4 cut(s) | 239, 484, 859, 3411 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 222, 495, 1274, 1353, 1756, 1958, 2597, 2684, 2950 |
| BsmAI | GTCTC | 9 cut(s) | 298, 490, 670, 1404, 1667, 2548, 2619, 2650, 3053 |
| BsmBI | CGTCTC | 1 cut(s) | 298 |
| BsmFI | GGGAC | 4 cut(s) | 239, 484, 859, 3411 |
| BsmI | GAATGC | 2 cut(s) | 423, 551 |
| Bso31I | GGTCTC | 2 cut(s) | 490, 670 |
| Bsp119I | TTCGAA | 2 cut(s) | 948, 2553 |
| Bsp1286I | GDGCHC | 8 cut(s) | 839, 1747, 1773, 1930, 2415, 2564, 3448, 3465 |
| Bsp13I | TCCGGA | 1 cut(s) | 2943 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1929 |
| Bsp19I | CCATGG | 1 cut(s) | 783 |
| Bsp68I | TCGCGA | 2 cut(s) | 435, 647 |
| BspCNI | CTCAG | 9 cut(s) | 31, 1439, 1759, 1807, 1942, 2182, 2395, 2725, 2877 |
| BspEI | TCCGGA | 1 cut(s) | 2943 |
| BspFNI | CGCG | 3 cut(s) | 435, 647, 773 |
| BspHI | TCATGA | 1 cut(s) | 2652 |
| BspMAI | CTGCAG | 2 cut(s) | 2167, 3427 |
| BspMI | ACCTGC | 2 cut(s) | 1114, 2073 |
| BspQI | GCTCTTC | 1 cut(s) | 3453 |
| BspT104I | TTCGAA | 2 cut(s) | 948, 2553 |
| BspT107I | GGYRCC | 1 cut(s) | 907 |
| BspTNI | GGTCTC | 2 cut(s) | 490, 670 |
| BsrBI | CCGCTC | 1 cut(s) | 39 |
| BsrDI | GCAATG | 1 cut(s) | 868 |
| BsrFI | RCCGGY | 3 cut(s) | 98, 154, 2761 |
| BsrI | ACTGG | 9 cut(s) | 58, 1474, 1493, 2146, 2232, 2314, 2688, 2787, 2818 |
| BssAI | RCCGGY | 3 cut(s) | 98, 154, 2761 |
| BssECI | CCNNGG | 7 cut(s) | 415, 732, 783, 1455, 1952, 3049, 3136 |
| BssNI | GRCGYC | 5 cut(s) | 276, 345, 534, 920, 1370 |
| BssT1I | CCWWGG | 3 cut(s) | 783, 1455, 1952 |
| Bst2UI | CCWGG | 3 cut(s) | 987, 3050, 3137 |
| Bst6I | CTCTTC | 5 cut(s) | 17, 132, 1238, 1980, 3453 |
| BstACI | GRCGYC | 5 cut(s) | 276, 345, 534, 920, 1370 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 907 |
| BstBAI | YACGTR | 1 cut(s) | 1718 |
| BstBI | TTCGAA | 2 cut(s) | 948, 2553 |
| BstDSI | CCRYGG | 2 cut(s) | 732, 783 |
| BstEII | GGTNACC | 1 cut(s) | 1090 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1351 |
| BstF5I | GGATG | 9 cut(s) | 309, 425, 527, 895, 1309, 1437, 2071, 2470, 2906 |
| BstFNI | CGCG | 3 cut(s) | 435, 647, 773 |
| BstH2I | RGCGCY | 3 cut(s) | 69, 285, 1220 |
| BstHHI | GCGC | 5 cut(s) | 68, 284, 597, 1219, 1481 |
| BstMAI | GTCTC | 9 cut(s) | 298, 490, 670, 1404, 1667, 2548, 2619, 2650, 3053 |
| BstMCI | CGRYCG | 3 cut(s) | 103, 765, 801 |
| BstNI | CCWGG | 3 cut(s) | 987, 3050, 3137 |
| BstNSI | RCATGY | 5 cut(s) | 520, 1193, 1203, 2939, 3181 |
| BstPI | GGTNACC | 1 cut(s) | 1090 |
| BstSCI | CCNGG | 4 cut(s) | 985, 2418, 3048, 3135 |
| BstSFI | CTRYAG | 3 cut(s) | 2163, 2610, 3423 |
| BstUI | CGCG | 3 cut(s) | 435, 647, 773 |
| BstV2I | GAAGAC | 1 cut(s) | 3192 |
| BstZI | CGGCCG | 1 cut(s) | 100 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1815 |
| BtgI | CCRYGG | 2 cut(s) | 732, 783 |
| BtgZI | GCGATG | 2 cut(s) | 103, 450 |
| BtsCI | GGATG | 9 cut(s) | 309, 425, 527, 895, 1309, 1437, 2071, 2470, 2906 |
| BtsI | GCAGTG | 2 cut(s) | 2323, 2533 |
| BtuMI | TCGCGA | 2 cut(s) | 435, 647 |
| BveI | ACCTGC | 2 cut(s) | 1114, 2073 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1499, 1969 |
| CciI | TCATGA | 1 cut(s) | 2652 |
| CfoI | GCGC | 5 cut(s) | 68, 284, 597, 1219, 1481 |
| Cfr10I | RCCGGY | 3 cut(s) | 98, 154, 2761 |
| Cfr13I | GGNCC | 9 cut(s) | 31, 498, 747, 1557, 1657, 1792, 2784, 3004, 3398 |
| CseI | GACGC | 7 cut(s) | 56, 226, 353, 533, 542, 909, 1359 |
| Csp6I | GTAC | 9 cut(s) | 769, 2004, 2483, 2519, 2809, 2817, 2989, 3175, 3498 |
| CspAI | ACCGGT | 1 cut(s) | 2761 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2909, 2944 |
| CviAII | CATG | 9 cut(s) | 517, 598, 784, 1190, 1200, 2653, 2936, 3070, 3178 |
| CviQI | GTAC | 9 cut(s) | 769, 2004, 2483, 2519, 2809, 2817, 2989, 3175, 3498 |
| DraI | TTTAAA | 1 cut(s) | 1668 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 113, 275 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 113, 275 |
| EaeI | YGGCCR | 2 cut(s) | 100, 1552 |
| EagI | CGGCCG | 1 cut(s) | 100 |
| Eam1104I | CTCTTC | 5 cut(s) | 17, 132, 1238, 1980, 3453 |
| EarI | CTCTTC | 5 cut(s) | 17, 132, 1238, 1980, 3453 |
| EciI | GGCGGA | 5 cut(s) | 44, 82, 151, 1187, 2024 |
| Ecl136II | GAGCTC | 1 cut(s) | 2413 |
| EclXI | CGGCCG | 1 cut(s) | 100 |
| Eco130I | CCWWGG | 3 cut(s) | 783, 1455, 1952 |
| Eco147I | AGGCCT | 1 cut(s) | 1528 |
| Eco24I | GRGCYC | 2 cut(s) | 839, 2415 |
| Eco31I | GGTCTC | 2 cut(s) | 490, 670 |
| Eco32I | GATATC | 1 cut(s) | 2373 |
| Eco47I | GGWCC | 6 cut(s) | 31, 498, 1557, 1657, 1792, 3398 |
| Eco47III | AGCGCT | 1 cut(s) | 1218 |
| Eco52I | CGGCCG | 1 cut(s) | 100 |
| Eco53kI | GAGCTC | 1 cut(s) | 2413 |
| Eco57I | CTGAAG | 2 cut(s) | 774, 3204 |
| Eco81I | CCTNAGG | 1 cut(s) | 1815 |
| Eco91I | GGTNACC | 1 cut(s) | 1090 |
| EcoICRI | GAGCTC | 1 cut(s) | 2413 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1351 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3398 |
| EcoO65I | GGTNACC | 1 cut(s) | 1090 |
| EcoRI | GAATTC | 2 cut(s) | 243, 637 |
| EcoRII | CCWGG | 3 cut(s) | 985, 3048, 3135 |
| EcoRV | GATATC | 1 cut(s) | 2373 |
| EcoT14I | CCWWGG | 3 cut(s) | 783, 1455, 1952 |
| EcoT22I | ATGCAT | 4 cut(s) | 425, 1191, 1205, 3106 |
| EcoT38I | GRGCYC | 2 cut(s) | 839, 2415 |
| ErhI | CCWWGG | 3 cut(s) | 783, 1455, 1952 |
| Esp3I | CGTCTC | 1 cut(s) | 298 |
| FaeI | CATG | 9 cut(s) | 520, 601, 787, 1193, 1203, 2656, 2939, 3073, 3181 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 167, 199, 1308, 1340, 1902, 1934, 3226, 3258 |
| FaqI | GGGAC | 4 cut(s) | 239, 484, 859, 3411 |
| FatI | CATG | 9 cut(s) | 516, 597, 783, 1189, 1199, 2652, 2935, 3069, 3177 |
| FauI | CCCGC | 3 cut(s) | 212, 509, 604 |
| FauNDI | CATATG | 3 cut(s) | 1119, 1462, 3477 |
| FblI | GTMKAC | 1 cut(s) | 678 |
| FokI | GGATG | 9 cut(s) | 296, 432, 514, 902, 1316, 1444, 2058, 2477, 2893 |
| FriOI | GRGCYC | 2 cut(s) | 839, 2415 |
| FspBI | CTAG | 7 cut(s) | 1617, 1901, 1953, 2210, 2292, 2358, 3024 |
| GlaI | GCGC | 5 cut(s) | 67, 283, 596, 1218, 1480 |
| GsaI | CCCAGC | 2 cut(s) | 1962, 3262 |
| GsuI | CTGGAG | 3 cut(s) | 68, 472, 3119 |
| HaeII | RGCGCY | 3 cut(s) | 69, 285, 1220 |
| HgaI | GACGC | 7 cut(s) | 56, 226, 353, 533, 542, 909, 1359 |
| HhaI | GCGC | 5 cut(s) | 68, 284, 597, 1219, 1481 |
| Hin1I | GRCGYC | 5 cut(s) | 276, 345, 534, 920, 1370 |
| Hin1II | CATG | 9 cut(s) | 520, 601, 787, 1193, 1203, 2656, 2939, 3073, 3181 |
| Hin6I | GCGC | 5 cut(s) | 66, 282, 595, 1217, 1479 |
| HinP1I | GCGC | 5 cut(s) | 66, 282, 595, 1217, 1479 |
| HincII | GTYRAC | 5 cut(s) | 679, 2020, 2266, 3046, 3420 |
| HindII | GTYRAC | 5 cut(s) | 679, 2020, 2266, 3046, 3420 |
| HindIII | AAGCTT | 1 cut(s) | 176 |
| HpaI | GTTAAC | 1 cut(s) | 2020 |
| Hpy99I | CGWCG | 8 cut(s) | 50, 137, 149, 242, 347, 527, 536, 925 |
| HpyCH4IV | ACGT | 5 cut(s) | 276, 1696, 1717, 3268, 3455 |
| HpySE526I | ACGT | 5 cut(s) | 276, 1696, 1717, 3268, 3455 |
| Hsp92I | GRCGYC | 5 cut(s) | 276, 345, 534, 920, 1370 |
| Hsp92II | CATG | 9 cut(s) | 520, 601, 787, 1193, 1203, 2656, 2939, 3073, 3181 |
| HspAI | GCGC | 5 cut(s) | 66, 282, 595, 1217, 1479 |
| Kpn2I | TCCGGA | 1 cut(s) | 2943 |
| KroI | GCCGGC | 2 cut(s) | 98, 154 |
| KroNI | GCCGGC | 2 cut(s) | 100, 156 |
| KspAI | GTTAAC | 1 cut(s) | 2020 |
| LguI | GCTCTTC | 1 cut(s) | 3453 |
| LmnI | GCTCC | 6 cut(s) | 44, 203, 842, 1451, 3020, 3468 |
| LweI | GCATC | 9 cut(s) | 410, 513, 536, 1294, 2035, 2344, 2882, 3091, 3113 |
| MaeI | CTAG | 7 cut(s) | 1617, 1901, 1953, 2210, 2292, 2358, 3024 |
| MaeII | ACGT | 5 cut(s) | 276, 1696, 1717, 3268, 3455 |
| MaeIII | GTNAC | 9 cut(s) | 104, 445, 512, 895, 1090, 1333, 1965, 2495, 2530 |
| MbiI | CCGCTC | 1 cut(s) | 39 |
| MfeI | CAATTG | 2 cut(s) | 658, 1566 |
| MhlI | GDGCHC | 8 cut(s) | 839, 1747, 1773, 1930, 2415, 2564, 3448, 3465 |
| MlyI | GAGTC | 4 cut(s) | 368, 566, 2103, 2261 |
| MmeI | TCCRAC | 3 cut(s) | 66, 220, 555 |
| Mph1103I | ATGCAT | 4 cut(s) | 425, 1191, 1205, 3106 |
| MroI | TCCGGA | 1 cut(s) | 2943 |
| MroNI | GCCGGC | 2 cut(s) | 98, 154 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1608 |
| MspA1I | CMGCKG | 5 cut(s) | 366, 492, 1396, 1933, 2728 |
| MspR9I | CCNGG | 4 cut(s) | 987, 2420, 3050, 3137 |
| MunI | CAATTG | 2 cut(s) | 658, 1566 |
| Mva1269I | GAATGC | 2 cut(s) | 423, 551 |
| MvaI | CCWGG | 3 cut(s) | 987, 3050, 3137 |
| MvnI | CGCG | 3 cut(s) | 435, 647, 773 |
| NaeI | GCCGGC | 2 cut(s) | 100, 156 |
| NciI | CCSGG | 1 cut(s) | 2420 |
| NcoI | CCATGG | 1 cut(s) | 783 |
| NdeI | CATATG | 3 cut(s) | 1119, 1462, 3477 |
| NgoMIV | GCCGGC | 2 cut(s) | 98, 154 |
| NlaIII | CATG | 9 cut(s) | 520, 601, 787, 1193, 1203, 2656, 2939, 3073, 3181 |
| NmuCI | GTSAC | 4 cut(s) | 104, 445, 895, 1333 |
| NruI | TCGCGA | 2 cut(s) | 435, 647 |
| NsiI | ATGCAT | 4 cut(s) | 425, 1191, 1205, 3106 |
| NspI | RCATGY | 5 cut(s) | 520, 1193, 1203, 2939, 3181 |
| NspV | TTCGAA | 2 cut(s) | 948, 2553 |
| PaeI | GCATGC | 2 cut(s) | 1193, 1203 |
| PagI | TCATGA | 1 cut(s) | 2652 |
| PaqCI | CACCTGC | 1 cut(s) | 2073 |
| PceI | AGGCCT | 1 cut(s) | 1528 |
| PciI | ACATGT | 1 cut(s) | 2935 |
| PciSI | GCTCTTC | 1 cut(s) | 3453 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 141, 528, 2491 |
| PctI | GAATGC | 2 cut(s) | 423, 551 |
| PdiI | GCCGGC | 2 cut(s) | 100, 156 |
| PfeI | GAWTC | 8 cut(s) | 587, 649, 1175, 1871, 1883, 2012, 3222, 3274 |
| PflFI | GACNNNGTC | 2 cut(s) | 230, 443 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 495 |
| PinAI | ACCGGT | 1 cut(s) | 2761 |
| Ple19I | CGATCG | 1 cut(s) | 765 |
| PleI | GAGTC | 4 cut(s) | 368, 565, 2102, 2261 |
| PpsI | GAGTC | 4 cut(s) | 368, 565, 2102, 2261 |
| Ppu21I | YACGTR | 1 cut(s) | 1718 |
| PpuMI | RGGWCCY | 1 cut(s) | 3398 |
| PscI | ACATGT | 1 cut(s) | 2935 |
| Psp124BI | GAGCTC | 1 cut(s) | 2415 |
| Psp5II | RGGWCCY | 1 cut(s) | 3398 |
| Psp6I | CCWGG | 3 cut(s) | 985, 3048, 3135 |
| PspEI | GGTNACC | 1 cut(s) | 1090 |
| PspFI | CCCAGC | 2 cut(s) | 1958, 3258 |
| PspGI | CCWGG | 3 cut(s) | 985, 3048, 3135 |
| PspPI | GGNCC | 9 cut(s) | 31, 498, 747, 1557, 1657, 1792, 2784, 3004, 3398 |
| PspPPI | RGGWCCY | 1 cut(s) | 3398 |
| PstI | CTGCAG | 2 cut(s) | 2167, 3427 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1499, 1969 |
| PsyI | GACNNNGTC | 2 cut(s) | 230, 443 |
| PvuI | CGATCG | 1 cut(s) | 765 |
| PvuII | CAGCTG | 3 cut(s) | 366, 492, 1396 |
| RruI | TCGCGA | 2 cut(s) | 435, 647 |
| RsaI | GTAC | 9 cut(s) | 770, 2005, 2484, 2520, 2810, 2818, 2990, 3176, 3499 |
| RsaNI | GTAC | 9 cut(s) | 769, 2004, 2483, 2519, 2809, 2817, 2989, 3175, 3498 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1608 |
| SacI | GAGCTC | 1 cut(s) | 2415 |
| SalI | GTCGAC | 1 cut(s) | 677 |
| SapI | GCTCTTC | 1 cut(s) | 3453 |
| Sau96I | GGNCC | 9 cut(s) | 31, 498, 747, 1557, 1657, 1792, 2784, 3004, 3398 |
| SchI | GAGTC | 4 cut(s) | 368, 566, 2103, 2261 |
| ScrFI | CCNGG | 4 cut(s) | 987, 2420, 3050, 3137 |
| SduI | GDGCHC | 8 cut(s) | 839, 1747, 1773, 1930, 2415, 2564, 3448, 3465 |
| SfaNI | GCATC | 9 cut(s) | 410, 513, 536, 1294, 2035, 2344, 2882, 3091, 3113 |
| SfcI | CTRYAG | 3 cut(s) | 2163, 2610, 3423 |
| SfuI | TTCGAA | 2 cut(s) | 948, 2553 |
| SinI | GGWCC | 6 cut(s) | 31, 498, 1557, 1657, 1792, 3398 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1608 |
| SmlI | CTYRAG | 3 cut(s) | 1165, 2408, 2475 |
| SmoI | CTYRAG | 3 cut(s) | 1165, 2408, 2475 |
| SphI | GCATGC | 2 cut(s) | 1193, 1203 |
| SseBI | AGGCCT | 1 cut(s) | 1528 |
| SspMI | CTAG | 7 cut(s) | 1617, 1901, 1953, 2210, 2292, 2358, 3024 |
| SstI | GAGCTC | 1 cut(s) | 2415 |
| StuI | AGGCCT | 1 cut(s) | 1528 |
| StyD4I | CCNGG | 4 cut(s) | 985, 2418, 3048, 3135 |
| StyI | CCWWGG | 3 cut(s) | 783, 1455, 1952 |
| TaiI | ACGT | 5 cut(s) | 279, 1699, 1720, 3271, 3458 |
| TaqII | GACCGA | 1 cut(s) | 787 |
| TatI | WGTACW | 2 cut(s) | 2808, 3174 |
| TauI | GCSGC | 3 cut(s) | 98, 287, 308 |
| TfiI | GAWTC | 8 cut(s) | 587, 649, 1175, 1871, 1883, 2012, 3222, 3274 |
| TseFI | GTSAC | 4 cut(s) | 104, 445, 895, 1333 |
| Tsp45I | GTSAC | 4 cut(s) | 104, 445, 895, 1333 |
| TspDTI | ATGAA | 7 cut(s) | 1106, 1863, 2186, 2634, 3318, 3324, 3339 |
| TspGWI | ACGGA | 3 cut(s) | 103, 1241, 2765 |
| Tth111I | GACNNNGTC | 2 cut(s) | 230, 443 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 495 |
| VpaK11BI | GGWCC | 6 cut(s) | 31, 498, 1557, 1657, 1792, 3398 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1351 |
| XapI | RAATTY | 8 cut(s) | 243, 637, 1662, 1687, 2395, 2721, 2768, 3080 |
| XbaI | TCTAGA | 2 cut(s) | 1900, 2209 |
| XceI | RCATGY | 5 cut(s) | 520, 1193, 1203, 2939, 3181 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2082 |
| XmaJI | CCTAGG | 1 cut(s) | 1952 |
| XmiI | GTMKAC | 1 cut(s) | 678 |
| XspI | CTAG | 7 cut(s) | 1617, 1901, 1953, 2210, 2292, 2358, 3024 |
| ZraI | GACGTC | 1 cut(s) | 277 |
| Zsp2I | ATGCAT | 4 cut(s) | 425, 1191, 1205, 3106 |