AT3G01950

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016502
Physical Location & Seq
Forward (+)
323934 .. 324478
545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G01950.1

Sequence Viewer

Length: 213 bp
ATGGGGTTGGACTGGGGACCGGTGCTAATGTCGGTAATTTTCTTCATCGTGTTGAGCCCTGGAGTTTTGTTTCAGCTGCCCGGAAAGAGCAAAGCGGTTGAGTTCGGTGGGTTTCAGACAAGCGGCCCCTCCATTGTCATCCACACTCTCCTCTTCTTCGCCTTCATCACCATCTCCCTCATCGCCCTTCACATCCACATCTACGCCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

70

Amino Acids

7.58

Weight (kDa)

6.81

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 4 - 68 2.6e-30 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01950 AT5G14110
malus_domestica MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica Prupe.5G149600_v2.0.a1
pyrus_communis pycom111g00760
rosa_chinensis RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii Rroxscaffold_3G00265060
rosa_rugosa Rorug02G0587900 Rorug06G0500800
rosa_samantha Rh2CG641400
rosa_wichuraiana Rw7G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 95, 123, 207
AgeI ACCGGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 76
AsiGI ACCGGT 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 17, 125
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 160
AvaII GGWCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 60
BcnI CCSGG 1 cut(s) 81
BisI GCNGC 3 cut(s) 77, 124, 207
BlsI GCNGC 3 cut(s) 78, 125, 208
Bme1390I CCNGG 2 cut(s) 60, 81
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 17, 125
BmiI GGNNCC 2 cut(s) 18, 127
BmrFI CCNGG 2 cut(s) 60, 81
BmrI ACTGGG 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 19
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 138, 192
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 126
BshTI ACCGGT 1 cut(s) 19
BsiSI CCGG 2 cut(s) 20, 81
BslFI GGGAC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 59
BspACI CCGC 3 cut(s) 95, 123, 207
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 18, 127
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 158
BstF5I GGATG 2 cut(s) 138, 192
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 58, 79
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 138, 192
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 17, 125
CspAI ACCGGT 1 cut(s) 19
CviJI RGCY 3 cut(s) 57, 76, 126
CviKI_1 RGCY 3 cut(s) 57, 76, 126
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 59
FaqI GGGAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 77, 124, 207
FokI GGATG 2 cut(s) 125, 179
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 77, 124, 207
GluI GCNGC 3 cut(s) 77, 124, 207
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 20, 81
HpaII CCGG 2 cut(s) 20, 81
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 117
HpyAV CCTTC 2 cut(s) 172, 197
LpnPI CCDG 4 cut(s) 33, 45, 72, 94
Lsp1109I GCAGC 1 cut(s) 63
MboII GAAGA 3 cut(s) 34, 145, 148
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 36
MnlI CCTC 3 cut(s) 139, 161, 188
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 2 cut(s) 20, 81
MspR9I CCNGG 2 cut(s) 60, 81
MvaI CCWGG 1 cut(s) 60
NciI CCSGG 1 cut(s) 81
NlaIV GGNNCC 2 cut(s) 18, 127
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 3 cut(s) 78, 125, 208
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 18, 127
PspPI GGNCC 2 cut(s) 17, 125
PvuII CAGCTG 1 cut(s) 76
SatI GCNGC 3 cut(s) 77, 124, 207
Sau96I GGNCC 2 cut(s) 17, 125
ScrFI CCNGG 2 cut(s) 60, 81
SduI GDGCHC 1 cut(s) 59
SetI ASST 1 cut(s) 78
SgeI CNNG 8 cut(s) 25, 32, 61, 71, 72, 92, 93, 132
SinI GGWCC 1 cut(s) 17
Sse9I AATT 1 cut(s) 36
SsiI CCGC 3 cut(s) 95, 123, 207
StyD4I CCNGG 2 cut(s) 58, 79
TasI AATT 1 cut(s) 36
TauI GCSGC 2 cut(s) 126, 209
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 34, 154
VpaK11BI GGWCC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.