RchiOBHm_Chr2g0175811

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016502
Physical Location & Seq
Forward (+)
87814950 .. 87816393
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54285

Sequence Viewer

Length: 210 bp
ATGGCGGACTGGGGCCCAGTACTGATTGGGGTTGTGCTGTTTATTCTGCTCCAACCGGGACTCCTCTTCTCGTTGCCGGGAAACGGCAAGCAGGTCGAGTTTGGGAGCATGAAGACCAACGGCAAAGCCATAGCTGTGCACACACTCATTTTTTTTGCGCTCTATGCCGTTCTCATCTTGGCCGTACACGTCCACATCTACACCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

69

Amino Acids

7.42

Weight (kDa)

8.2

Isoelectric Point (pI)

25.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 9.9e-33 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01950 AT5G14110
malus_domestica MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica Prupe.5G149600_v2.0.a1
pyrus_communis pycom111g00760
rosa_chinensis RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii Rroxscaffold_3G00265060
rosa_rugosa Rorug02G0587900 Rorug06G0500800
rosa_samantha Rh2CG641400
rosa_wichuraiana Rw7G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 180
AfaI GTAC 2 cut(s) 21, 186
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 187
AgeI ACCGGT 1 cut(s) 203
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 137
AoxI GGCC 2 cut(s) 13, 180
ApaI GGGCCC 1 cut(s) 17
ApaLI GTGCAC 1 cut(s) 137
AsiGI ACCGGT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 13, 14
AsuC2I CCSGG 2 cut(s) 57, 78
BaeGI GKGCMC 2 cut(s) 17, 141
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 141
BceAI ACGGC 4 cut(s) 100, 136, 152, 167
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BcnI CCSGG 2 cut(s) 57, 78
BfuAI ACCTGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 57, 78
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 13, 14
BmiI GGNNCC 2 cut(s) 14, 15
BmrFI CCNGG 2 cut(s) 57, 78
BmrI ACTGGG 2 cut(s) 11, 19
BmuI ACTGGG 2 cut(s) 11, 19
BpiI GAAGAC 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 57, 78
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 14, 17
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 14, 17
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 2 cut(s) 17, 141
BshFI GGCC 2 cut(s) 15, 182
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 3 cut(s) 56, 77, 204
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 72
BsnI GGCC 2 cut(s) 15, 182
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 17, 141
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 15, 182
BspLI GGNNCC 2 cut(s) 14, 15
BspMI ACCTGC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 14, 17
BssAI RCCGGY 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 89
BstHHI GCGC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 55, 76
BstSLI GKGCMC 2 cut(s) 17, 141
BstV2I GAAGAC 1 cut(s) 119
BsuRI GGCC 2 cut(s) 15, 182
BtrI CACGTC 1 cut(s) 190
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 13, 14
Csp6I GTAC 2 cut(s) 20, 185
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 1 cut(s) 109
CviJI RGCY 4 cut(s) 15, 128, 134, 182
CviKI_1 RGCY 4 cut(s) 15, 128, 134, 182
CviQI GTAC 2 cut(s) 20, 185
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 1 cut(s) 112
FaiI YATR 3 cut(s) 110, 131, 165
FaqI GGGAC 1 cut(s) 72
FatI CATG 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 17
GlaI GCGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 15, 182
HapII CCGG 3 cut(s) 56, 77, 204
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 60
HpaII CCGG 3 cut(s) 56, 77, 204
Hpy166II GTNNAC 3 cut(s) 139, 187, 193
Hpy8I GTNNAC 3 cut(s) 139, 187, 193
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 54, 105
LpnPI CCDG 4 cut(s) 30, 69, 77, 90
MaeII ACGT 1 cut(s) 189
MboII GAAGA 2 cut(s) 58, 124
MhlI GDGCHC 2 cut(s) 17, 141
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 134
MspI CCGG 3 cut(s) 56, 77, 204
MspR9I CCNGG 2 cut(s) 57, 78
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 2 cut(s) 57, 78
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 2 cut(s) 14, 15
PinAI ACCGGT 1 cut(s) 203
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 14, 15
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 13, 14
RsaI GTAC 2 cut(s) 21, 186
RsaNI GTAC 2 cut(s) 20, 185
RseI CAYNNNNRTG 1 cut(s) 134
Sau96I GGNCC 2 cut(s) 13, 14
ScaI AGTACT 1 cut(s) 21
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 57, 78
SduI GDGCHC 2 cut(s) 17, 141
SetI ASST 3 cut(s) 96, 136, 192
SmiMI CAYNNNNRTG 1 cut(s) 134
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 55, 76
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 96
TatI WGTACW 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 125
VneI GTGCAC 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.