Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016502

Physical Location & Seq

Genomic Coordinates Reverse (-)

9222194 .. 9222532

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTTGGACTGGGCACCCATTTTTCTAGGGTTCTTGTTGTTCGTATTGCTCTCTCCTGGACTCCTGTTCCAGCTACCTGGAAACTCCAAGAATGTTGAGTTTGGGAGCTTCACCACAAATGGCAAGGCCATTATTGTCCACACACTCCTCTTCTTTGTCATCTTTACCATCCTTATCTTGGCAGTAGGCATCCAAATCCACACAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3339

Protein Analysis

69

Amino Acids

7.58

Weight (kDa)

6.69

Isoelectric Point (pI)

13.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3339	PF11820	1 - 67	1.9e-29	Protein of unknown function (DUF3339)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01950 AT5G14110
malus_domestica	MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica	Prupe.5G149600_v2.0.a1
pyrus_communis	pycom111g00760
rosa_chinensis	RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii	Rroxscaffold_3G00265060
rosa_rugosa	Rorug02G0587900 Rorug06G0500800
rosa_samantha	Rh2CG641400
rosa_wichuraiana	Rw7G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	55, 76
AluBI	AGCT	2 cut(s)	73, 108
AluI	AGCT	2 cut(s)	73, 108
AoxI	GGCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	13
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	2 cut(s)	57, 78
BfaI	CTAG	1 cut(s)	26
Bme1390I	CCNGG	2 cut(s)	57, 78
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	57, 78
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	57, 78
BseGI	GGATG	2 cut(s)	168, 189
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	178
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	15
BspT107I	GGYRCC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	14
Bst2UI	CCWGG	2 cut(s)	57, 78
Bst6I	CTCTTC	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	168, 189
BstNI	CCWGG	2 cut(s)	57, 78
BstSCI	CCNGG	2 cut(s)	55, 76
BstSLI	GKGCMC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	168, 189
CviJI	RGCY	4 cut(s)	73, 108, 128, 207
CviKI_1	RGCY	4 cut(s)	73, 108, 128, 207
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	55, 76
FokI	GGATG	2 cut(s)	155, 176
FspBI	CTAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	128
HinfI	GANTC	1 cut(s)	60
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	7 cut(s)	42, 63, 69, 77, 83, 90, 189
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	1 cut(s)	26
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	57, 78
MvaI	CCWGG	2 cut(s)	57, 78
NlaIV	GGNNCC	1 cut(s)	15
PfoI	TCCNGGA	1 cut(s)	55
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	55, 76
PspGI	CCWGG	2 cut(s)	55, 76
PspN4I	GGNNCC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	57, 78
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	3 cut(s)	75, 79, 110
SfaNI	GCATC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	55, 76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.