Rorug02G0587900

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016502
Physical Location & Seq
Forward (+)
71042193 .. 71043018
826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0587900.1

Sequence Viewer

Length: 738 bp
ATGAGCAGGGATTACAAGATTAAGCCACGTGCTATGCATTATGCTTGTATGATTGAATTGCTAGGACAAGAGGGCAATTTAGATGAAGTGTTTGCACTAATAAGAACTGCTCCCTTAAAGCCTACAGCAAACATGTGGGCTGCTCTGCTGACAGCTTGTCGAATCCATGAGAATTTAGAGCTTGGCAAAATTGCAGCCGAAGAGCTCTATGGGATGGAGCCTGAGAAGCTAAGTAATTATGTTGTGCTCCTAAGTATATACAACAGTTGTGGAAAGTTAAAGGAAGTTGCTGCTGTTGTTCAGACTCTAAGAAGAAAGGGTTTGAGAATGCTTCCGGCATGCAGTTGGATTGAAATTAAGAAACAAGTACATATTTTTCATTCCAGAGATGAAAGGCATGCCCAAACAAGAGAGATTTACGAGAAAGTGGACGAATTGATGGTCAAGATTAGGAGACGTGGTTATATCCCTGACAAGAAGCCTCTACTTCCTGATGTGGATGAACACGAGTGCATCTCATCAGCTTACCACAGTGAGAAACTGGCTATAGCTTACGGATTGATCAGTAAGTCAGATGGGACGCCACTGCAAATTGTGCAAGGCCATCGCATTTGCGGAGACTGCCATTCCGCAATCAAGTTAATAGCTAAGGTGACTGAACGGGAAATTGTAGTGAGGGACGCCAGCAGATTCCACCACTTCAAGAATGGGAGTTGTTCTTGTGGGAATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

245

Amino Acids

27.96

Weight (kDa)

8.78

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 56 - 118 7.7e-12 E motif
DYW_deaminase PF14432 154 - 245 2.6e-35 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01950 AT5G14110
malus_domestica MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica Prupe.5G149600_v2.0.a1
pyrus_communis pycom111g00760
rosa_chinensis RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii Rroxscaffold_3G00265060
rosa_rugosa Rorug02G0587900 Rorug06G0500800
rosa_samantha Rh2CG641400
rosa_wichuraiana Rw7G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 615, 630
AcsI RAATTY 1 cut(s) 172
AcvI CACGTG 1 cut(s) 29
AcyI GRCGYC 2 cut(s) 581, 681
AfaI GTAC 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 3 cut(s) 56, 353, 703
AhdI GACNNNNNGTC 1 cut(s) 156
AjiI CACGTC 1 cut(s) 458
AluBI AGCT 7 cut(s) 155, 181, 205, 229, 524, 551, 647
AluI AGCT 7 cut(s) 155, 181, 205, 229, 524, 551, 647
Alw21I GWGCWC 2 cut(s) 207, 249
Alw26I GTCTC 2 cut(s) 448, 612
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 3 cut(s) 140, 194, 290
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 426, 458
AsuHPI GGTGA 1 cut(s) 664
BanII GRGCYC 1 cut(s) 207
BauI CACGAG 1 cut(s) 506
BbrPI CACGTG 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 207, 249
BbvI GCAGC 3 cut(s) 127, 206, 277
BccI CCATC 4 cut(s) 208, 433, 569, 612
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 2 cut(s) 448, 612
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 2 cut(s) 123, 546
BisI GCNGC 3 cut(s) 141, 195, 291
BlsI GCNGC 3 cut(s) 142, 196, 292
BmeRI GACNNNNNGTC 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 458
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 500, 532
Bpu10I CCTNAGC 1 cut(s) 648
BsaAI YACGTR 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 581, 681
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bse1I ACTGG 2 cut(s) 546, 737
BseGI GGATG 2 cut(s) 219, 505
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 546, 737
BseXI GCAGC 3 cut(s) 127, 206, 277
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 2 cut(s) 207, 249
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 2 cut(s) 592, 692
BsmAI GTCTC 2 cut(s) 448, 612
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 2 cut(s) 592, 692
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 1 cut(s) 603
Bsp1286I GDGCHC 2 cut(s) 207, 249
Bsp143I GATC 1 cut(s) 561
BspACI CCGC 2 cut(s) 615, 630
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 546, 737
BssMI GATC 1 cut(s) 561
BssNI GRCGYC 2 cut(s) 581, 681
BssSI CACGAG 1 cut(s) 506
Bst2BI CACGAG 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 266, 533
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 2 cut(s) 581, 681
BstAPI GCANNNNNTGC 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 340, 399, 685
BstDEI CTNAG 5 cut(s) 222, 230, 251, 308, 648
BstF5I GGATG 2 cut(s) 219, 505
BstKTI GATC 1 cut(s) 564
BstMAI GTCTC 2 cut(s) 448, 612
BstMBI GATC 1 cut(s) 561
BstMWI GCNNNNNNNGC 3 cut(s) 226, 595, 621
BstNSI RCATGY 3 cut(s) 136, 342, 401
BstSFI CTRYAG 2 cut(s) 123, 546
BstV1I GCAGC 3 cut(s) 127, 206, 277
BsuRI GGCC 1 cut(s) 603
BtgZI GCGATG 1 cut(s) 590
BtrI CACGTC 1 cut(s) 458
BtsCI GGATG 2 cut(s) 219, 505
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 2 cut(s) 538, 584
Cac8I GCNNGC 3 cut(s) 340, 399, 685
CseI GACGC 2 cut(s) 589, 689
Csp6I GTAC 1 cut(s) 368
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 4 cut(s) 133, 167, 339, 398
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 5 cut(s) 222, 230, 251, 308, 648
DpnI GATC 1 cut(s) 563
DpnII GATC 1 cut(s) 561
DriI GACNNNNNGTC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 195
Eam1105I GACNNNNNGTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 4 cut(s) 136, 170, 342, 401
FaqI GGGAC 2 cut(s) 592, 692
FatI CATG 4 cut(s) 132, 166, 338, 397
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 3 cut(s) 141, 195, 291
FokI GGATG 2 cut(s) 226, 512
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 141, 195, 291
FspBI CTAG 1 cut(s) 62
GluI GCNGC 3 cut(s) 141, 195, 291
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 335
HgaI GACGC 2 cut(s) 589, 689
Hin1I GRCGYC 2 cut(s) 581, 681
Hin1II CATG 4 cut(s) 136, 170, 342, 401
HinfI GANTC 3 cut(s) 162, 304, 690
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 2 cut(s) 303, 574
Hpy188III TCNNGA 4 cut(s) 384, 445, 491, 703
Hpy8I GTNNAC 1 cut(s) 430
HpyCH4III ACNGT 2 cut(s) 266, 533
HpyCH4IV ACGT 2 cut(s) 28, 457
HpyCH4V TGCA 7 cut(s) 37, 95, 194, 342, 513, 589, 598
HpyF10VI GCNNNNNNNGC 3 cut(s) 226, 595, 621
HpyF3I CTNAG 5 cut(s) 222, 230, 251, 308, 648
HpySE526I ACGT 2 cut(s) 28, 457
Hsp92I GRCGYC 2 cut(s) 581, 681
Hsp92II CATG 4 cut(s) 136, 170, 342, 401
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 1 cut(s) 561
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 115, 217, 252
LpnPI CCDG 8 cut(s) 234, 348, 397, 483, 504, 527, 697, 718
Lsp1109I GCAGC 3 cut(s) 127, 206, 277
LweI GCATC 1 cut(s) 522
MaeI CTAG 1 cut(s) 62
MaeII ACGT 2 cut(s) 28, 457
MaeIII GTNAC 1 cut(s) 652
MalI GATC 1 cut(s) 563
MboI GATC 1 cut(s) 561
MboII GAAGA 2 cut(s) 212, 324
MhlI GDGCHC 2 cut(s) 207, 249
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 1 cut(s) 326
MnlI CCTC 3 cut(s) 64, 492, 669
Mph1103I ATGCAT 1 cut(s) 39
MseI TTAA 5 cut(s) 21, 116, 278, 357, 641
MspI CCGG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 226, 595, 621
NdeII GATC 1 cut(s) 561
NlaIII CATG 4 cut(s) 136, 170, 342, 401
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 652
NsiI ATGCAT 1 cut(s) 39
NspI RCATGY 3 cut(s) 136, 342, 401
PaeI GCATGC 2 cut(s) 342, 401
PciI ACATGT 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 195
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 162, 690
PkrI GCNGC 3 cut(s) 142, 196, 292
PleI GAGTC 1 cut(s) 298
PmaCI CACGTG 1 cut(s) 29
PmlI CACGTG 1 cut(s) 29
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 29
PscI ACATGT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 207
PspCI CACGTG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 219
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SacI GAGCTC 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 5 cut(s) 21, 116, 278, 357, 641
SatI GCNGC 3 cut(s) 141, 195, 291
Sau3AI GATC 1 cut(s) 561
SchI GAGTC 1 cut(s) 298
SduI GDGCHC 2 cut(s) 207, 249
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 2 cut(s) 123, 546
SphI GCATGC 2 cut(s) 342, 401
SsiI CCGC 2 cut(s) 615, 630
SspMI CTAG 1 cut(s) 62
SstI GAGCTC 1 cut(s) 207
TaaI ACNGT 2 cut(s) 266, 533
TaiI ACGT 2 cut(s) 31, 460
TaqI TCGA 1 cut(s) 160
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 2 cut(s) 162, 690
Tru1I TTAA 5 cut(s) 21, 116, 278, 357, 641
Tru9I TTAA 5 cut(s) 21, 116, 278, 357, 641
TscAI CASTG 2 cut(s) 538, 591
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 3 cut(s) 140, 194, 290
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 4 cut(s) 99, 368, 405, 516
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 2 cut(s) 538, 591
XapI RAATTY 1 cut(s) 172
XceI RCATGY 3 cut(s) 136, 342, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 704
XspI CTAG 1 cut(s) 62
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.