MD09G1009400.v1.1

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016502
Physical Location & Seq
Reverse (-)
667771 .. 667980
210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1009400.v1.1.491

Sequence Viewer

Length: 210 bp
ATGGCGGACTGGGGCCCAATATTTATAGGGGTGGTGCTGTTCATCCTGCTGCAACCGGGGCTGCTCTTCGCCTTACCGGGAAACAGCAAGCAGATGGAGTTTGGGCACATGAAGACCAACGGCAAGGCCATAGCTGTCCACACTCTCATCTTCTTCGCTCTGTACGCCATTCTCATCCTGGCCGTCCACGTCCACATCTATACCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

70

Amino Acids

7.58

Weight (kDa)

8.22

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 1 - 67 1.5e-31 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01950 AT5G14110
malus_domestica MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica Prupe.5G149600_v2.0.a1
pyrus_communis pycom111g00760
rosa_chinensis RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii Rroxscaffold_3G00265060
rosa_rugosa Rorug02G0587900 Rorug06G0500800
rosa_samantha Rh2CG641400
rosa_wichuraiana Rw7G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 180
AfaI GTAC 1 cut(s) 164
AgeI ACCGGT 1 cut(s) 203
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AoxI GGCC 3 cut(s) 13, 126, 180
ApaI GGGCCC 1 cut(s) 17
ApeKI GCWGC 2 cut(s) 49, 61
AsiGI ACCGGT 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 13, 14
AsuC2I CCSGG 2 cut(s) 57, 78
BaeGI GKGCMC 2 cut(s) 17, 108
BanII GRGCYC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 36, 48
BccI CCATC 1 cut(s) 88
BceAI ACGGC 2 cut(s) 136, 167
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 2 cut(s) 57, 78
BisI GCNGC 2 cut(s) 50, 62
BlsI GCNGC 2 cut(s) 51, 63
Bme1390I CCNGG 3 cut(s) 57, 78, 179
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 13, 14
BmiI GGNNCC 2 cut(s) 14, 15
BmrFI CCNGG 3 cut(s) 57, 78, 179
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 57, 78
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 14
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 2 cut(s) 42, 174
BseNI ACTGG 1 cut(s) 14
BseSI GKGCMC 2 cut(s) 17, 108
BseXI GCAGC 2 cut(s) 36, 48
BshFI GGCC 3 cut(s) 15, 128, 182
BshTI ACCGGT 1 cut(s) 203
BsiSI CCGG 3 cut(s) 56, 77, 204
BsnI GGCC 3 cut(s) 15, 128, 182
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 17, 108
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 15, 128, 182
BspLI GGNNCC 2 cut(s) 14, 15
BspQI GCTCTTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 89
BstF5I GGATG 2 cut(s) 42, 174
BstMWI GCNNNNNNNGC 2 cut(s) 58, 164
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 55, 76, 177
BstSLI GKGCMC 2 cut(s) 17, 108
BstV1I GCAGC 2 cut(s) 36, 48
BstV2I GAAGAC 1 cut(s) 119
BsuRI GGCC 3 cut(s) 15, 128, 182
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 42, 174
Cac8I GCNNGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 13, 14
Csp6I GTAC 1 cut(s) 163
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 1 cut(s) 109
CviJI RGCY 5 cut(s) 15, 61, 128, 134, 182
CviKI_1 RGCY 5 cut(s) 15, 61, 128, 134, 182
CviQI GTAC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 1 cut(s) 112
FaiI YATR 4 cut(s) 26, 110, 131, 201
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 50, 62
FokI GGATG 2 cut(s) 29, 161
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 50, 62
GluI GCNGC 2 cut(s) 50, 62
HaeIII GGCC 3 cut(s) 15, 128, 182
HapII CCGG 3 cut(s) 56, 77, 204
Hin1II CATG 1 cut(s) 112
HpaII CCGG 3 cut(s) 56, 77, 204
Hpy166II GTNNAC 3 cut(s) 139, 187, 193
Hpy8I GTNNAC 3 cut(s) 139, 187, 193
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 164
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 112
LguI GCTCTTC 1 cut(s) 71
LpnPI CCDG 5 cut(s) 59, 69, 90, 164, 191
Lsp1109I GCAGC 2 cut(s) 36, 48
MaeII ACGT 1 cut(s) 189
MboII GAAGA 4 cut(s) 58, 124, 142, 145
MhlI GDGCHC 2 cut(s) 17, 108
MspI CCGG 3 cut(s) 56, 77, 204
MspR9I CCNGG 3 cut(s) 57, 78, 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 58, 164
NciI CCSGG 2 cut(s) 57, 78
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 2 cut(s) 14, 15
PciSI GCTCTTC 1 cut(s) 71
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 2 cut(s) 51, 63
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 14, 15
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 13, 14
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 71
SatI GCNGC 2 cut(s) 50, 62
Sau96I GGNCC 2 cut(s) 13, 14
ScrFI CCNGG 3 cut(s) 57, 78, 179
SduI GDGCHC 2 cut(s) 17, 108
SetI ASST 2 cut(s) 136, 192
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 55, 76, 177
TaiI ACGT 1 cut(s) 192
TseI GCWGC 2 cut(s) 49, 61
TspDTI ATGAA 2 cut(s) 31, 125
XcmI CCANNNNNNNNNTGG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.