Rh2CG641400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016502
Physical Location & Seq
Forward (+)
81118132 .. 81130243
12112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG641400.1

Sequence Viewer

Length: 297 bp
ATGATCCGGATAGCAATCCCGCTTGTCATCATGTTTCCGAACTCCATCACCCTTGTCCTTGCTGGTAATTGGAATAGCAGCCCCGGCGACAAGAGAATGAACAAGACCACCGCAACAACGACCGGCCCCCAATCAGCACTCATCATTCCCTCTGCTCTCGCTCCGCTTACAAAATCAAGGAAAGAAAAGCTAAAAGGGCACTACACCAAGGATGTAGGCTTGAAGCCTTCTGTCTCCGATCAGGAGGAGGAGGGCTACCAGACTCTGCTCGCCTTTCGGAAGTCGAGAACGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.73

Weight (kDa)

10.07

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01950 AT5G14110
malus_domestica MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica Prupe.5G149600_v2.0.a1
pyrus_communis pycom111g00760
rosa_chinensis RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii Rroxscaffold_3G00265060
rosa_rugosa Rorug02G0587900 Rorug06G0500800
rosa_samantha Rh2CG641400
rosa_wichuraiana Rw7G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 6
AciI CCGC 3 cut(s) 20, 111, 164
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 238
AlwNI CAGNNNCTG 1 cut(s) 265
Aor13HI TCCGGA 1 cut(s) 6
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 238
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 82, 207
BsaWI WCCGGW 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 14
BseAI TCCGGA 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 82, 207
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 260, 263
BseSI GKGCMC 1 cut(s) 201
BseXI GCAGC 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 123
BsiSI CCGG 3 cut(s) 7, 84, 123
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 6
Bsp143I GATC 2 cut(s) 3, 238
BspACI CCGC 3 cut(s) 20, 111, 164
BspANI GGCC 1 cut(s) 126
BspEI TCCGGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 82, 207
BssMI GATC 2 cut(s) 3, 238
BssT1I CCWWGG 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 270
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 2 cut(s) 6, 241
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 3, 238
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 2 cut(s) 84, 196
BstSCI CCNGG 1 cut(s) 82
BstSLI GKGCMC 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 81, 126, 190, 219, 226, 255
CviKI_1 RGCY 6 cut(s) 81, 126, 190, 219, 226, 255
DpnI GATC 2 cut(s) 5, 240
DpnII GATC 2 cut(s) 3, 238
Eco130I CCWWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 34
FaiI YATR 1 cut(s) 32
FatI CATG 1 cut(s) 30
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 126
HapII CCGG 3 cut(s) 7, 84, 123
Hin1II CATG 1 cut(s) 34
HinfI GANTC 1 cut(s) 262
HpaII CCGG 3 cut(s) 7, 84, 123
HphI GGTGA 1 cut(s) 40
Hpy188I TCNGA 3 cut(s) 39, 238, 279
Hpy188III TCNNGA 3 cut(s) 7, 242, 285
HpyAV CCTTC 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 196
Hsp92II CATG 1 cut(s) 34
Kpn2I TCCGGA 1 cut(s) 6
Kzo9I GATC 2 cut(s) 3, 238
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 6 cut(s) 20, 48, 97, 136, 227, 272
Lsp1109I GCAGC 1 cut(s) 90
MalI GATC 2 cut(s) 5, 240
MboI GATC 2 cut(s) 3, 238
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 4 cut(s) 160, 238, 241, 244
MroI TCCGGA 1 cut(s) 6
MspI CCGG 3 cut(s) 7, 84, 123
MspR9I CCNGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 84, 196
NciI CCSGG 1 cut(s) 84
NdeII GATC 2 cut(s) 3, 238
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 265
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 3, 238
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 201
SetI ASST 1 cut(s) 192
Sse9I AATT 1 cut(s) 67
SsiI CCGC 3 cut(s) 20, 111, 164
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 207
TaqI TCGA 1 cut(s) 284
TasI AATT 1 cut(s) 67
TseI GCWGC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.