AT5G14110

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016502
Physical Location & Seq
Reverse (-)
4553803 .. 4554597
795 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14110.1

Sequence Viewer

Length: 213 bp
ATGGTGTTGAATTGGGGACCAGTCTTAATGTCGGTATTTCTGTTCATCGTATTGACGCCTGGAGTATTGTTTCAGCTTCCAGGGAAGACCAAAGTGGTTGAGTTTGGCGGCTTTCAAACAAGCGGCGCAGCCATTGTCATCCACACTCTTATCTTCTTTGCGTGCATTACAGTCTCTATTATCGCTCTTCATATCCACATCTATGTTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

70

Amino Acids

7.6

Weight (kDa)

8.0

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 4 - 68 4.7e-29 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01950 AT5G14110
malus_domestica MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica Prupe.5G149600_v2.0.a1
pyrus_communis pycom111g00760
rosa_chinensis RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii Rroxscaffold_3G00265060
rosa_rugosa Rorug02G0587900 Rorug06G0500800
rosa_samantha Rh2CG641400
rosa_wichuraiana Rw7G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 108, 123
AcyI GRCGYC 1 cut(s) 56
AgsI TTSAA 2 cut(s) 10, 116
AjnI CCWGG 2 cut(s) 58, 79
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 17
AvaII GGWCC 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 60, 81
BcoDI GTCTC 1 cut(s) 178
BisI GCNGC 3 cut(s) 109, 124, 129
BlsI GCNGC 3 cut(s) 110, 125, 130
Bme1390I CCNGG 2 cut(s) 60, 81
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 60, 81
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 60, 81
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 140
BslFI GGGAC 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 30
BspACI CCGC 2 cut(s) 108, 123
BspLI GGNNCC 1 cut(s) 18
BspQI GCTCTTC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 60, 81
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 128
BstMAI GTCTC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 60, 81
BstSCI CCNGG 2 cut(s) 58, 79
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 163
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 1 cut(s) 64
CviJI RGCY 3 cut(s) 76, 111, 131
CviKI_1 RGCY 3 cut(s) 76, 111, 131
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 58, 79
FaiI YATR 2 cut(s) 192, 204
FaqI GGGAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 109, 124, 129
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 109, 124, 129
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 109, 124, 129
GsuI CTGGAG 1 cut(s) 81
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 56
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 56
HspAI GCGC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 33, 45, 66, 72, 93
Lsp1109I GCAGC 1 cut(s) 140
MboII GAAGA 3 cut(s) 97, 145, 179
MluCI AATT 1 cut(s) 10
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 60, 81
MvaI CCWGG 2 cut(s) 60, 81
NlaIV GGNNCC 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 192
PkrI GCNGC 3 cut(s) 110, 125, 130
Psp6I CCWGG 2 cut(s) 58, 79
PspGI CCWGG 2 cut(s) 58, 79
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 3 cut(s) 109, 124, 129
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 2 cut(s) 60, 81
SetI ASST 1 cut(s) 78
SgeI CNNG 7 cut(s) 32, 71, 72, 92, 93, 132, 174
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 1 cut(s) 10
SsiI CCGC 2 cut(s) 108, 123
StyD4I CCNGG 2 cut(s) 58, 79
TaaI ACNGT 1 cut(s) 172
TasI AATT 1 cut(s) 10
TauI GCSGC 2 cut(s) 111, 126
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 34, 179
VpaK11BI GGWCC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.