Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0016502

Physical Location & Seq

Genomic Coordinates Reverse (-)

24974624 .. 24977596

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1155600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTAGATTGGGCACCAATTTTAATGGGGTGGTTGTTGTTCATACTGCTCTCCCCAGGCCTCTTGTTCCAGATACCAGGAAATTCCAGGCATGTAGAGTTTGGAAGCTTCACCACAAATGGCAAAGCAATTTTGGTTCACACTCTTATTTTCTTTGGCATCTTCACCATCCTCATTTTGGCAGTGGGAGGGGCAAAAATGGCAGACTGGGGTCCGGTGGTGATAGCGGTGATGCTGTTTGTGCTATTGACACCGGGGCTTTTGTTTCAGATACCCGGCCATGGGAGGTTGGTGGAGTTCGGGAACATGGAGACCAGCGGCGCTTCCATTCTGGTACACTCCGTCATCTACTTTGGCCTCATCACCATCTTCCTTATTGCCATCGGAGTTCACATCTATACAGATGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3339

Protein Analysis

138

Amino Acids

14.88

Weight (kDa)

5.86

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3339	PF11820	1 - 63	1.8e-28	Protein of unknown function (DUF3339)
DUF3339	PF11820	67 - 133	7.4e-35	Protein of unknown function (DUF3339)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01950 AT5G14110
malus_domestica	MD06G1140400.v1.1 MD09G1009400.v1.1 MD14G1155600.v1.1
prunus_persica	Prupe.5G149600_v2.0.a1
pyrus_communis	pycom111g00760
rosa_chinensis	RchiOBHm_Chr2g0175811 RchiOBHm_Chr7g0189911
rosa_roxburghii	Rroxscaffold_3G00265060
rosa_rugosa	Rorug02G0587900 Rorug06G0500800
rosa_samantha	Rh2CG641400
rosa_wichuraiana	Rw7G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AciI	CCGC	2 cut(s)	227, 318
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	3 cut(s)	178, 281, 282
AjnI	CCWGG	3 cut(s)	55, 76, 86
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	3 cut(s)	58, 277, 355
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	2 cut(s)	255, 276
AsuHPI	GGTGA	5 cut(s)	103, 157, 232, 241, 355
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	13
BccI	CCATC	3 cut(s)	176, 374, 389
BciT130I	CCWGG	3 cut(s)	57, 78, 88
BcnI	CCSGG	2 cut(s)	255, 276
BcoDI	GTCTC	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	5 cut(s)	57, 78, 88, 255, 276
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	15, 213
BmrFI	CCNGG	5 cut(s)	57, 78, 88, 255, 276
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	3 cut(s)	168, 222, 394
BmuI	ACTGGG	1 cut(s)	217
BoxI	GACNNNNGTC	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	255, 276
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	55, 254, 280
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 281, 282
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	3 cut(s)	57, 78, 88
BseDI	CCNNGG	3 cut(s)	55, 254, 280
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	178, 281, 282
BseNI	ACTGG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	16
BshFI	GGCC	3 cut(s)	60, 279, 357
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	3 cut(s)	215, 254, 276
BslI	CCNNNNNNNGG	3 cut(s)	178, 281, 282
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	60, 279, 357
Bso31I	GGTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	2 cut(s)	227, 318
BspANI	GGCC	3 cut(s)	60, 279, 357
BspLI	GGNNCC	2 cut(s)	15, 213
BspT107I	GGYRCC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	55, 254, 280
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	57, 78, 88
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstMAI	GTCTC	1 cut(s)	305
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 241
BstNI	CCWGG	3 cut(s)	57, 78, 88
BstNSI	RCATGY	1 cut(s)	95
BstPAI	GACNNNNGTC	1 cut(s)	210
BstSCI	CCNGG	5 cut(s)	55, 76, 86, 253, 274
BstSLI	GKGCMC	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	60, 279, 357
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	407
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	92, 281, 307
CviJI	RGCY	5 cut(s)	60, 108, 259, 279, 357
CviKI_1	RGCY	5 cut(s)	60, 108, 259, 279, 357
CviQI	GTAC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	212
EcoRII	CCWGG	3 cut(s)	55, 76, 86
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	3 cut(s)	95, 284, 310
FaiI	YATR	5 cut(s)	44, 93, 282, 308, 399
FatI	CATG	3 cut(s)	91, 280, 306
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	319
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	319
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	60, 279, 357
HapII	CCGG	3 cut(s)	215, 254, 276
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	95, 284, 310
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	106
HpaII	CCGG	3 cut(s)	215, 254, 276
HphI	GGTGA	5 cut(s)	103, 157, 232, 241, 355
Hpy166II	GTNNAC	3 cut(s)	139, 337, 391
Hpy188I	TCNGA	2 cut(s)	270, 386
Hpy188III	TCNNGA	2 cut(s)	70, 301
Hpy8I	GTNNAC	3 cut(s)	139, 337, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 241
Hsp92II	CATG	3 cut(s)	95, 284, 310
HspAI	GCGC	1 cut(s)	321
LweI	GCATC	3 cut(s)	168, 222, 394
MboII	GAAGA	2 cut(s)	154, 361
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	18, 82, 129
MnlI	CCTC	5 cut(s)	71, 182, 182, 279, 368
MseI	TTAA	2 cut(s)	23, 412
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	3 cut(s)	215, 254, 276
MspR9I	CCNGG	5 cut(s)	57, 78, 88, 255, 276
MvaI	CCWGG	3 cut(s)	57, 78, 88
MwoI	GCNNNNNNNGC	2 cut(s)	200, 241
NciI	CCSGG	2 cut(s)	255, 276
NcoI	CCATGG	1 cut(s)	280
NlaIII	CATG	3 cut(s)	95, 284, 310
NlaIV	GGNNCC	2 cut(s)	15, 213
NspI	RCATGY	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	210
Psp6I	CCWGG	3 cut(s)	55, 76, 86
PspGI	CCWGG	3 cut(s)	55, 76, 86
PspN4I	GGNNCC	2 cut(s)	15, 213
PspPI	GGNCC	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	23, 412
SatI	GCNGC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	5 cut(s)	57, 78, 88, 255, 276
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	2 cut(s)	110, 290
SfaNI	GCATC	3 cut(s)	168, 222, 394
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	3 cut(s)	18, 82, 129
SseBI	AGGCCT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	227, 318
StuI	AGGCCT	1 cut(s)	60
StyD4I	CCNGG	5 cut(s)	55, 76, 86, 253, 274
StyI	CCWWGG	1 cut(s)	280
TasI	AATT	3 cut(s)	18, 82, 129
TauI	GCSGC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	23, 412
Tru9I	TTAA	2 cut(s)	23, 412
TscAI	CASTG	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.